Wall clock time and date at job start Tue Mar 31 2020 07:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 N 1.40089 * 126.03859 * 2 1 4 4 C 1.30839 * 108.20647 * 180.02562 * 3 2 1 5 5 C 1.39870 * 108.19974 * 359.77874 * 4 3 2 6 6 C 1.34950 * 126.03709 * 180.02562 * 2 1 3 7 7 C 1.50696 * 126.12742 * 359.94785 * 6 2 1 8 8 H 1.08994 * 109.70600 * 188.42092 * 7 6 2 9 9 C 1.53200 * 109.58467 * 308.77713 * 7 6 2 10 10 C 1.53045 * 109.33655 * 174.40387 * 9 7 6 11 11 C 1.53032 * 109.54196 * 298.68424 * 10 9 7 12 12 C 1.53186 * 109.34190 * 61.31403 * 11 10 9 13 13 N 1.46925 * 109.58798 * 68.06280 * 7 6 2 14 14 C 1.34782 * 120.63128 * 6.62976 * 13 7 6 15 15 O 1.21283 * 119.99571 * 5.08211 * 14 13 7 16 16 C 1.50701 * 120.00228 * 185.08584 * 14 13 7 17 17 C 1.52999 * 109.47036 * 179.97438 * 16 14 13 18 18 C 1.50701 * 109.47036 * 180.02562 * 17 16 14 19 19 H 1.07999 * 119.99607 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00081 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00108 * 180.02562 * 20 18 17 22 22 Si 1.86802 * 120.00133 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47125 * 90.00034 * 22 20 18 24 24 H 1.48497 * 109.47433 * 210.00562 * 22 20 18 25 25 H 1.48506 * 109.46794 * 330.00009 * 22 20 18 26 26 H 1.09000 * 109.47473 * 264.95482 * 1 2 3 27 27 H 1.09005 * 109.47169 * 24.95275 * 1 2 3 28 28 H 1.09002 * 109.47361 * 144.95273 * 1 2 3 29 29 H 1.07994 * 125.90110 * 180.02562 * 4 3 2 30 30 H 1.08007 * 126.03936 * 180.23360 * 5 4 3 31 31 H 1.09000 * 109.49259 * 294.37248 * 9 7 6 32 32 H 1.09000 * 109.49804 * 54.43799 * 9 7 6 33 33 H 1.09002 * 109.46056 * 58.67121 * 10 9 7 34 34 H 1.08998 * 109.45504 * 178.62496 * 10 9 7 35 35 H 1.09010 * 109.46804 * 301.36803 * 11 10 9 36 36 H 1.08995 * 109.49847 * 181.28829 * 11 10 9 37 37 H 1.08998 * 109.58991 * 185.59577 * 12 11 10 38 38 H 1.09007 * 109.58641 * 65.16913 * 12 11 10 39 39 H 1.08995 * 109.46726 * 300.00003 * 16 14 13 40 40 H 1.09000 * 109.46853 * 59.99600 * 16 14 13 41 41 H 1.09005 * 109.47051 * 300.00003 * 17 16 14 42 42 H 1.08997 * 109.46834 * 59.99939 * 17 16 14 43 43 H 0.97003 * 120.00191 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7321 -0.0006 5 6 3.5436 -0.6665 0.0042 6 6 2.2589 -1.0913 -0.0005 7 6 1.7973 -2.5258 0.0000 8 1 2.6511 -3.1865 0.1497 9 6 0.7803 -2.7377 1.1260 10 6 0.2116 -4.1556 1.0350 11 6 -0.5060 -4.3342 -0.3048 12 6 0.4962 -4.1404 -1.4470 13 7 1.1532 -2.8364 -1.2835 14 6 1.1652 -1.9423 -2.2920 15 8 1.7888 -0.9084 -2.1783 16 6 0.4036 -2.2273 -3.5608 17 6 0.5810 -1.0610 -4.5350 18 6 -0.1811 -1.3457 -5.8035 19 1 -0.7361 -2.2666 -5.9049 20 6 -0.1690 -0.4310 -6.8351 21 7 -0.8345 -0.6793 -7.9419 22 14 0.7916 1.1615 -6.6601 23 1 2.1778 0.9602 -7.1531 24 1 0.1327 2.2272 -7.4570 25 1 0.8279 1.5631 -5.2308 26 1 -0.3634 -0.0904 1.0237 27 1 -0.3634 0.9318 -0.4336 28 1 -0.3634 -0.8413 -0.5901 29 1 4.4054 1.3710 -0.0003 30 1 4.4210 -1.2964 0.0086 31 1 1.2716 -2.6038 2.0897 32 1 -0.0288 -2.0141 1.0264 33 1 1.0240 -4.8783 1.1104 34 1 -0.4942 -4.3166 1.8498 35 1 -1.3033 -3.5959 -0.3913 36 1 -0.9304 -5.3367 -0.3594 37 1 -0.0283 -4.1681 -2.4021 38 1 1.2441 -4.9328 -1.4153 39 1 0.7841 -3.1420 -4.0152 40 1 -0.6546 -2.3495 -3.3297 41 1 0.2001 -0.1465 -4.0802 42 1 1.6391 -0.9385 -4.7661 43 1 -0.8256 -0.0359 -8.6679 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330883874.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:24 Heat of formation + Delta-G solvation = 31.062085 kcal Electronic energy + Delta-G solvation = -24772.150980 eV Core-core repulsion = 21432.634723 eV Total energy + Delta-G solvation = -3339.516256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.55809 -40.71103 -38.46466 -35.66570 -34.43715 -33.82400 -33.48685 -32.71362 -29.92726 -28.33120 -27.58592 -26.04777 -24.40429 -23.33271 -22.18210 -21.38220 -20.87323 -19.89610 -19.12304 -17.97880 -17.23675 -16.90262 -16.62457 -16.29138 -15.92756 -15.36701 -15.27918 -15.07755 -14.91197 -14.71229 -14.50509 -14.39434 -14.18004 -13.84350 -13.59584 -13.39122 -13.35643 -13.04584 -12.95753 -12.32276 -12.08426 -12.03996 -11.87903 -11.83115 -11.62357 -11.54792 -11.47281 -11.37586 -11.00934 -10.83298 -9.75876 -9.60633 -9.10589 -8.36868 -6.38684 1.03659 1.25407 1.28341 1.43146 1.64714 1.80538 1.90947 2.26881 2.28388 2.99135 3.31147 3.70546 3.79012 3.89561 3.94656 4.11650 4.15681 4.24015 4.30060 4.31102 4.34399 4.41406 4.48224 4.54739 4.71856 4.77374 4.90278 4.91544 4.94121 4.95068 5.09387 5.16100 5.24425 5.28815 5.31189 5.38046 5.48773 5.56134 5.60592 5.91086 6.18587 6.26078 6.39502 6.67645 6.93553 7.24482 7.26898 8.78789 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015949 B = 0.005829 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.210327 B = 4802.467593 C = 6026.781630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.356 5.356 3 N -0.344 5.344 4 C 0.037 3.963 5 C -0.297 4.297 6 C 0.128 3.872 7 C 0.205 3.795 8 H 0.113 0.887 9 C -0.133 4.133 10 C -0.110 4.110 11 C -0.133 4.133 12 C 0.099 3.901 13 N -0.610 5.610 14 C 0.503 3.497 15 O -0.547 6.547 16 C -0.110 4.110 17 C 0.014 3.986 18 C -0.526 4.526 19 H 0.054 0.946 20 C 0.021 3.979 21 N -0.940 5.940 22 Si 0.933 3.067 23 H -0.270 1.270 24 H -0.276 1.276 25 H -0.272 1.272 26 H 0.098 0.902 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.194 0.806 30 H 0.153 0.847 31 H 0.088 0.912 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.017 -10.278 23.150 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.139 5.139 3 N -0.167 5.167 4 C -0.147 4.147 5 C -0.327 4.327 6 C -0.001 4.001 7 C 0.101 3.899 8 H 0.130 0.870 9 C -0.171 4.171 10 C -0.147 4.147 11 C -0.171 4.171 12 C -0.022 4.022 13 N -0.346 5.346 14 C 0.293 3.707 15 O -0.424 6.424 16 C -0.150 4.150 17 C -0.024 4.024 18 C -0.564 4.564 19 H 0.072 0.928 20 C -0.177 4.177 21 N -0.580 5.580 22 Si 0.759 3.241 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.197 1.197 26 H 0.116 0.884 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.211 0.789 30 H 0.170 0.830 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.352 -8.655 23.020 24.705 hybrid contribution 0.897 0.493 -0.850 1.331 sum 3.249 -8.162 22.170 23.847 Atomic orbital electron populations 1.21908 0.74870 1.03685 1.03399 1.48140 1.06260 1.03134 1.56370 1.77133 1.02863 1.09747 1.26925 1.23982 0.95215 0.95841 0.99677 1.21209 0.96429 0.95036 1.20035 1.20809 0.91426 0.90065 0.97762 1.19970 0.97065 0.88540 0.84374 0.86974 1.22145 0.98125 0.99686 0.97140 1.21488 1.00867 0.94777 0.97613 1.21944 0.97498 1.03677 0.93976 1.22097 0.96426 0.82836 1.00875 1.48404 1.56606 1.17729 1.11825 1.21251 0.80804 0.83067 0.85590 1.90794 1.43765 1.27673 1.80124 1.21475 1.00801 1.00877 0.91860 1.19128 0.95305 0.94498 0.93516 1.21406 1.30422 1.05280 0.99263 0.92770 1.25675 0.95989 1.01131 0.94952 1.70000 1.43877 1.37727 1.06409 0.85920 0.79414 0.80481 0.78319 1.19575 1.20152 1.19665 0.88387 0.91002 0.90446 0.78884 0.82965 0.89334 0.91744 0.90077 0.89749 0.92259 0.88126 0.89222 0.89070 0.88366 0.88378 0.98032 0.98106 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.79 9.07 127.77 1.16 3.95 16 2 N -0.36 -11.69 2.72 -356.04 -0.97 -12.66 16 3 N -0.34 -12.87 12.58 -57.03 -0.72 -13.58 16 4 C 0.04 1.22 12.03 85.24 1.03 2.24 16 5 C -0.30 -9.00 10.32 21.99 0.23 -8.77 16 6 C 0.13 3.75 3.25 41.40 0.13 3.89 16 7 C 0.20 4.28 3.04 44.23 0.13 4.41 16 8 H 0.11 1.95 8.12 -2.39 -0.02 1.93 16 9 C -0.13 -1.91 5.23 30.68 0.16 -1.75 16 10 C -0.11 -1.01 5.89 30.62 0.18 -0.83 16 11 C -0.13 -1.46 6.08 30.67 0.19 -1.27 16 12 C 0.10 1.55 6.35 86.36 0.55 2.10 16 13 N -0.61 -14.35 2.66 -799.18 -2.13 -16.48 16 14 C 0.50 17.25 6.12 87.66 0.54 17.79 16 15 O -0.55 -23.33 11.32 -3.04 -0.03 -23.36 16 16 C -0.11 -4.12 3.99 29.85 0.12 -4.00 16 17 C 0.01 0.68 3.33 29.85 0.10 0.78 16 18 C -0.53 -30.36 9.66 25.60 0.25 -30.11 16 19 H 0.05 3.25 7.99 -2.91 -0.02 3.23 16 20 C 0.02 1.24 5.47 84.65 0.46 1.70 16 21 N -0.94 -58.92 13.96 21.44 0.30 -58.62 16 22 Si 0.93 48.34 27.47 68.60 1.88 50.22 16 23 H -0.27 -13.64 7.11 99.48 0.71 -12.94 16 24 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 25 H -0.27 -14.42 6.54 99.48 0.65 -13.77 16 26 H 0.10 1.96 7.43 -2.39 -0.02 1.94 16 27 H 0.07 2.13 8.14 -2.38 -0.02 2.12 16 28 H 0.08 2.07 5.77 -2.39 -0.01 2.06 16 29 H 0.19 5.00 8.06 -2.91 -0.02 4.97 16 30 H 0.15 3.83 8.06 -2.91 -0.02 3.81 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.05 4.85 -2.39 -0.01 1.04 16 33 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.09 1.55 5.93 -2.39 -0.01 1.53 16 38 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.10 3.37 7.73 -2.39 -0.02 3.35 16 40 H 0.10 3.33 7.90 -2.39 -0.02 3.31 16 41 H 0.00 0.07 7.16 -2.38 -0.02 0.05 16 42 H 0.00 0.03 7.53 -2.39 -0.02 0.01 16 43 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -79.45 333.10 4.50 -74.95 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: 0.94 Total: 9.40 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: 5.22 Total: -9.86 kcal Atomic # 7 Polarization: -97.83 SS G_CDS: -3.51 Total: -101.34 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.03 Total: -23.36 kcal Atomic # 14 Polarization: 48.34 SS G_CDS: 1.88 Total: 50.22 kcal Total: -79.45 4.50 -74.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330883874.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.012 kcal (2) G-P(sol) polarization free energy of solvation -79.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds