Wall clock time and date at job start Tue Mar 31 2020 07:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40086 * 126.03532 * 2 1 4 4 C 1.30840 * 108.20184 * 179.97438 * 3 2 1 5 5 C 1.39876 * 108.20407 * 359.77985 * 4 3 2 6 6 C 1.34946 * 126.03416 * 179.97438 * 2 1 3 7 7 C 1.50692 * 126.13146 * 359.97438 * 6 2 1 8 8 H 1.08996 * 109.70583 * 179.78602 * 7 6 2 9 9 C 1.53204 * 109.58434 * 59.43371 * 7 6 2 10 10 C 1.53040 * 109.31442 * 185.57755 * 9 7 6 11 11 C 1.53037 * 109.53873 * 61.36429 * 10 9 7 12 12 C 1.53196 * 109.31331 * 298.63724 * 11 10 9 13 13 N 1.46921 * 108.77706 * 54.63371 * 12 11 10 14 14 C 1.34783 * 120.63315 * 126.11457 * 13 12 11 15 15 O 1.21279 * 119.99924 * 173.90488 * 14 13 12 16 16 C 1.50696 * 119.99653 * 353.90699 * 14 13 12 17 17 C 1.52999 * 109.46931 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47108 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99889 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99815 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00317 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99867 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47027 * 60.00038 * 22 20 18 24 24 H 1.48494 * 109.47268 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47027 * 300.00159 * 22 20 18 26 26 H 1.08990 * 109.47214 * 276.12996 * 1 2 3 27 27 H 1.09003 * 109.46557 * 36.12907 * 1 2 3 28 28 H 1.08998 * 109.46825 * 156.12004 * 1 2 3 29 29 H 1.08000 * 125.89541 * 179.97438 * 4 3 2 30 30 H 1.07995 * 126.03958 * 180.23136 * 5 4 3 31 31 H 1.09002 * 109.49182 * 65.62867 * 9 7 6 32 32 H 1.08997 * 109.51964 * 305.54846 * 9 7 6 33 33 H 1.09004 * 109.45814 * 301.34392 * 10 9 7 34 34 H 1.09001 * 109.45845 * 181.38811 * 10 9 7 35 35 H 1.08999 * 109.49862 * 178.68093 * 11 10 9 36 36 H 1.09003 * 109.49742 * 58.58178 * 11 10 9 37 37 H 1.09002 * 109.58656 * 294.84516 * 12 11 10 38 38 H 1.09003 * 109.58440 * 174.41769 * 12 11 10 39 39 H 1.08996 * 109.47344 * 300.00052 * 16 14 13 40 40 H 1.09004 * 109.47189 * 60.00206 * 16 14 13 41 41 H 1.09004 * 109.47306 * 300.00107 * 17 16 14 42 42 H 1.08995 * 109.47319 * 60.00289 * 17 16 14 43 43 H 0.96997 * 120.00273 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0060 6 6 2.2589 -1.0913 0.0005 7 6 1.7974 -2.5258 0.0017 8 1 2.6616 -3.1899 -0.0020 9 6 0.9409 -2.7907 -1.2407 10 6 0.3615 -4.2051 -1.1638 11 6 -0.5314 -4.3259 0.0731 12 6 0.3083 -4.0784 1.3303 13 7 0.9851 -2.7810 1.1991 14 6 0.8588 -1.8406 2.1563 15 8 1.5084 -0.8185 2.0917 16 6 -0.0896 -2.0592 3.3068 17 6 -0.0421 -0.8505 4.2437 18 6 -0.9901 -1.0694 5.3946 19 1 -1.5689 -1.9794 5.4518 20 6 -1.1193 -0.1075 6.3738 21 7 -0.4148 1.0009 6.3038 22 14 -2.2949 -0.3785 7.8000 23 1 -1.8949 -1.5986 8.5461 24 1 -2.2487 0.7945 8.7093 25 1 -3.6750 -0.5473 7.2786 26 1 -0.3633 0.1097 1.0217 27 1 -0.3632 0.8301 -0.6060 28 1 -0.3633 -0.9397 -0.4160 29 1 4.4054 1.3710 0.0003 30 1 4.4211 -1.2963 0.0113 31 1 1.5581 -2.6984 -2.1344 32 1 0.1277 -2.0662 -1.2836 33 1 1.1750 -4.9276 -1.0965 34 1 -0.2283 -4.4050 -2.0584 35 1 -0.9623 -5.3263 0.1145 36 1 -1.3308 -3.5869 0.0184 37 1 1.0512 -4.8692 1.4351 38 1 -0.3404 -4.0652 2.2062 39 1 -1.1026 -2.1832 2.9241 40 1 0.2040 -2.9548 3.8546 41 1 0.9710 -0.7270 4.6264 42 1 -0.3354 0.0452 3.6963 43 1 -0.5060 1.6778 6.9926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330883875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:30 Heat of formation + Delta-G solvation = 60.023243 kcal Electronic energy + Delta-G solvation = -24750.781325 eV Core-core repulsion = 21412.520919 eV Total energy + Delta-G solvation = -3338.260406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36537 -39.39625 -37.30814 -33.72356 -33.05462 -32.74291 -32.14264 -30.71683 -28.83423 -26.44642 -26.08160 -24.87220 -23.48456 -21.97034 -20.98140 -20.21854 -19.73460 -18.51386 -17.14611 -16.25122 -15.80584 -15.60145 -15.50737 -14.70503 -14.51798 -14.42354 -14.15081 -13.95498 -13.70087 -13.39285 -13.12227 -12.96284 -12.53918 -12.26990 -12.22626 -12.06920 -11.92997 -11.42012 -11.24078 -11.06642 -10.93272 -10.87401 -10.76318 -10.62479 -10.14612 -9.99731 -9.75372 -9.45667 -9.13092 -8.52410 -8.34339 -8.24742 -7.86182 -5.97592 -4.03047 2.30333 2.99918 3.12863 3.17669 3.32268 3.37414 3.38730 3.46967 4.32714 4.45394 4.56911 4.59033 4.81943 4.89569 4.95555 5.05144 5.22488 5.35955 5.36938 5.41098 5.48510 5.54695 5.59103 5.63491 5.73613 5.79190 5.80894 5.91572 6.02550 6.10428 6.13705 6.14931 6.18628 6.45947 6.64978 6.83837 7.17172 7.49540 7.66755 7.70735 7.81835 8.04140 8.25078 8.35219 8.68079 9.05085 9.60828 11.12988 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.005173 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.543270 B = 5411.211117 C = 6564.993639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.335 5.335 3 N -0.292 5.292 4 C 0.042 3.958 5 C -0.282 4.282 6 C 0.124 3.876 7 C 0.208 3.792 8 H 0.091 0.909 9 C -0.137 4.137 10 C -0.116 4.116 11 C -0.138 4.138 12 C 0.110 3.890 13 N -0.627 5.627 14 C 0.500 3.500 15 O -0.499 6.499 16 C -0.127 4.127 17 C 0.041 3.959 18 C -0.529 4.529 19 H 0.054 0.946 20 C 0.060 3.940 21 N -0.888 5.888 22 Si 0.892 3.108 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.081 0.919 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.173 0.827 30 H 0.134 0.866 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.094 0.906 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.022 0.978 42 H 0.021 0.979 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 -12.133 -17.278 21.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.118 5.118 3 N -0.114 5.114 4 C -0.143 4.143 5 C -0.312 4.312 6 C -0.005 4.005 7 C 0.103 3.897 8 H 0.109 0.891 9 C -0.176 4.176 10 C -0.154 4.154 11 C -0.176 4.176 12 C -0.013 4.013 13 N -0.365 5.365 14 C 0.290 3.710 15 O -0.371 6.371 16 C -0.167 4.167 17 C 0.004 3.996 18 C -0.568 4.568 19 H 0.073 0.927 20 C -0.142 4.142 21 N -0.526 5.526 22 Si 0.720 3.280 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.099 0.901 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.190 0.810 30 H 0.152 0.848 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.574 -10.355 -17.173 20.115 hybrid contribution -0.092 -0.889 1.014 1.352 sum 1.482 -11.244 -16.159 19.742 Atomic orbital electron populations 1.22026 0.75719 1.02962 1.04189 1.47951 1.05599 1.02967 1.55297 1.77218 1.01667 1.08223 1.24254 1.23489 0.95092 0.94701 1.01063 1.20844 0.95319 0.95089 1.19933 1.20245 0.91455 0.88850 0.99900 1.19619 0.93921 0.90561 0.85610 0.89077 1.22174 1.00104 0.98018 0.97255 1.21498 0.99461 0.96239 0.98214 1.21964 0.98485 1.02450 0.94722 1.21724 0.96046 0.84608 0.98957 1.48499 1.51244 1.16510 1.20205 1.21685 0.83506 0.82452 0.83324 1.90836 1.44617 1.27165 1.74526 1.21898 0.96650 1.03948 0.94174 1.18860 0.97754 0.90679 0.92318 1.21149 1.24306 1.03676 1.07643 0.92744 1.25018 0.95934 0.95172 0.98115 1.69990 1.40412 1.07741 1.34455 0.86667 0.81410 0.77612 0.82330 1.20238 1.21252 1.20254 0.90083 0.90350 0.89794 0.80993 0.84763 0.90418 0.90913 0.91515 0.91472 0.90563 0.91337 0.91513 0.88761 0.90477 0.90377 0.95979 0.96106 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 9.64 59.85 0.58 2.02 16 2 N -0.34 -5.99 2.53 -63.89 -0.16 -6.15 16 3 N -0.29 -5.73 12.58 30.63 0.39 -5.35 16 4 C 0.04 0.72 12.03 -17.36 -0.21 0.51 16 5 C -0.28 -4.57 10.62 -40.01 -0.42 -4.99 16 6 C 0.12 2.00 3.41 -82.27 -0.28 1.72 16 7 C 0.21 2.60 3.04 -68.75 -0.21 2.39 16 8 H 0.09 1.03 8.12 -51.93 -0.42 0.61 16 9 C -0.14 -1.30 5.24 -26.61 -0.14 -1.44 16 10 C -0.12 -0.85 5.88 -26.69 -0.16 -1.00 16 11 C -0.14 -1.07 6.08 -26.61 -0.16 -1.24 16 12 C 0.11 1.10 6.35 -3.71 -0.02 1.07 16 13 N -0.63 -8.55 2.92 -166.53 -0.49 -9.04 16 14 C 0.50 9.27 5.88 -10.98 -0.06 9.20 16 15 O -0.50 -11.27 10.61 5.56 0.06 -11.21 16 16 C -0.13 -2.51 4.00 -27.88 -0.11 -2.62 16 17 C 0.04 1.10 4.26 -27.88 -0.12 0.99 16 18 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 20 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -27.57 13.29 55.43 0.74 -26.84 16 22 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H 0.08 1.50 6.89 -51.93 -0.36 1.14 16 27 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 28 H 0.08 1.06 4.72 -51.93 -0.25 0.82 16 29 H 0.17 2.35 8.06 -52.49 -0.42 1.93 16 30 H 0.13 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.75 4.94 -51.93 -0.26 0.49 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.98 5.93 -51.93 -0.31 0.67 16 39 H 0.08 1.38 7.94 -51.93 -0.41 0.97 16 40 H 0.08 1.44 7.69 -51.93 -0.40 1.04 16 41 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 42 H 0.02 0.61 8.10 -51.93 -0.42 0.19 16 43 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 335.37 15.07 5.05 5.05 Total: -1.00 -35.79 335.37 -7.76 -43.55 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.59 Total: 0.32 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.73 Total: -6.97 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: 0.47 Total: -47.37 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.06 Total: -11.21 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.79 -7.76 -43.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330883875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.574 kcal (2) G-P(sol) polarization free energy of solvation -35.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds