Wall clock time and date at job start Tue Mar 31 2020 07:11:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40086 * 126.03532 * 2 1 4 4 C 1.30840 * 108.20184 * 179.97438 * 3 2 1 5 5 C 1.39876 * 108.20407 * 359.77985 * 4 3 2 6 6 C 1.34946 * 126.03416 * 179.97438 * 2 1 3 7 7 C 1.50692 * 126.13146 * 359.97438 * 6 2 1 8 8 H 1.08996 * 109.70583 * 179.78602 * 7 6 2 9 9 C 1.53204 * 109.58434 * 59.43371 * 7 6 2 10 10 C 1.53040 * 109.31442 * 185.57755 * 9 7 6 11 11 C 1.53037 * 109.53873 * 61.36429 * 10 9 7 12 12 C 1.53196 * 109.31331 * 298.63724 * 11 10 9 13 13 N 1.46921 * 108.77706 * 54.63371 * 12 11 10 14 14 C 1.34783 * 120.63315 * 126.11457 * 13 12 11 15 15 O 1.21279 * 119.99924 * 173.90488 * 14 13 12 16 16 C 1.50696 * 119.99653 * 353.90699 * 14 13 12 17 17 C 1.52999 * 109.46931 * 179.97438 * 16 14 13 18 18 C 1.50705 * 109.47108 * 180.02562 * 17 16 14 19 19 H 1.07996 * 119.99889 * 359.97438 * 18 17 16 20 20 C 1.37873 * 119.99815 * 180.02562 * 18 17 16 21 21 N 1.31516 * 120.00317 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99867 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47027 * 60.00038 * 22 20 18 24 24 H 1.48494 * 109.47268 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47027 * 300.00159 * 22 20 18 26 26 H 1.08990 * 109.47214 * 276.12996 * 1 2 3 27 27 H 1.09003 * 109.46557 * 36.12907 * 1 2 3 28 28 H 1.08998 * 109.46825 * 156.12004 * 1 2 3 29 29 H 1.08000 * 125.89541 * 179.97438 * 4 3 2 30 30 H 1.07995 * 126.03958 * 180.23136 * 5 4 3 31 31 H 1.09002 * 109.49182 * 65.62867 * 9 7 6 32 32 H 1.08997 * 109.51964 * 305.54846 * 9 7 6 33 33 H 1.09004 * 109.45814 * 301.34392 * 10 9 7 34 34 H 1.09001 * 109.45845 * 181.38811 * 10 9 7 35 35 H 1.08999 * 109.49862 * 178.68093 * 11 10 9 36 36 H 1.09003 * 109.49742 * 58.58178 * 11 10 9 37 37 H 1.09002 * 109.58656 * 294.84516 * 12 11 10 38 38 H 1.09003 * 109.58440 * 174.41769 * 12 11 10 39 39 H 1.08996 * 109.47344 * 300.00052 * 16 14 13 40 40 H 1.09004 * 109.47189 * 60.00206 * 16 14 13 41 41 H 1.09004 * 109.47306 * 300.00107 * 17 16 14 42 42 H 1.08995 * 109.47319 * 60.00289 * 17 16 14 43 43 H 0.96997 * 120.00273 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 0.0006 5 6 3.5437 -0.6666 0.0060 6 6 2.2589 -1.0913 0.0005 7 6 1.7974 -2.5258 0.0017 8 1 2.6616 -3.1899 -0.0020 9 6 0.9409 -2.7907 -1.2407 10 6 0.3615 -4.2051 -1.1638 11 6 -0.5314 -4.3259 0.0731 12 6 0.3083 -4.0784 1.3303 13 7 0.9851 -2.7810 1.1991 14 6 0.8588 -1.8406 2.1563 15 8 1.5084 -0.8185 2.0917 16 6 -0.0896 -2.0592 3.3068 17 6 -0.0421 -0.8505 4.2437 18 6 -0.9901 -1.0694 5.3946 19 1 -1.5689 -1.9794 5.4518 20 6 -1.1193 -0.1075 6.3738 21 7 -0.4148 1.0009 6.3038 22 14 -2.2949 -0.3785 7.8000 23 1 -1.8949 -1.5986 8.5461 24 1 -2.2487 0.7945 8.7093 25 1 -3.6750 -0.5473 7.2786 26 1 -0.3633 0.1097 1.0217 27 1 -0.3632 0.8301 -0.6060 28 1 -0.3633 -0.9397 -0.4160 29 1 4.4054 1.3710 0.0003 30 1 4.4211 -1.2963 0.0113 31 1 1.5581 -2.6984 -2.1344 32 1 0.1277 -2.0662 -1.2836 33 1 1.1750 -4.9276 -1.0965 34 1 -0.2283 -4.4050 -2.0584 35 1 -0.9623 -5.3263 0.1145 36 1 -1.3308 -3.5869 0.0184 37 1 1.0512 -4.8692 1.4351 38 1 -0.3404 -4.0652 2.2062 39 1 -1.1026 -2.1832 2.9241 40 1 0.2040 -2.9548 3.8546 41 1 0.9710 -0.7270 4.6264 42 1 -0.3354 0.0452 3.6963 43 1 -0.5060 1.6778 6.9926 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330883875.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:29 Heat of formation + Delta-G solvation = 36.272875 kcal Electronic energy + Delta-G solvation = -24751.811219 eV Core-core repulsion = 21412.520919 eV Total energy + Delta-G solvation = -3339.290300 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.59386 -40.66040 -38.45699 -35.66842 -34.41101 -33.77568 -33.38641 -32.48664 -29.92449 -28.05259 -27.55411 -26.07109 -24.46339 -23.62330 -22.19550 -21.43622 -20.86477 -19.78746 -18.84144 -17.84310 -17.21257 -16.91850 -16.72222 -16.43668 -15.88571 -15.36309 -15.19012 -15.09370 -14.82967 -14.53385 -14.41854 -14.25040 -14.09916 -13.71780 -13.59362 -13.30800 -13.21130 -13.05254 -12.78931 -12.52998 -12.24024 -11.95145 -11.88516 -11.67701 -11.59878 -11.45568 -11.43277 -11.31744 -10.93954 -10.59519 -9.67595 -9.58012 -9.16047 -8.20626 -6.35864 1.05514 1.39117 1.43760 1.51639 1.69494 1.81429 1.93158 2.25721 2.41069 3.12255 3.31558 3.66173 3.81815 3.88937 4.00405 4.10341 4.14909 4.21963 4.28153 4.35029 4.41889 4.47859 4.52266 4.56760 4.73609 4.82580 4.90959 4.93000 4.96901 4.98936 5.12759 5.17597 5.25515 5.30042 5.44609 5.50213 5.57932 5.64098 5.81317 5.91958 6.13748 6.27917 6.42367 6.83253 6.95256 7.30208 7.35556 8.91558 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016960 B = 0.005173 C = 0.004264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.543270 B = 5411.211117 C = 6564.993639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.345 5.345 3 N -0.347 5.347 4 C 0.033 3.967 5 C -0.299 4.299 6 C 0.121 3.879 7 C 0.205 3.795 8 H 0.113 0.887 9 C -0.130 4.130 10 C -0.110 4.110 11 C -0.133 4.133 12 C 0.099 3.901 13 N -0.613 5.613 14 C 0.501 3.499 15 O -0.550 6.550 16 C -0.113 4.113 17 C 0.053 3.947 18 C -0.543 4.543 19 H 0.076 0.924 20 C -0.006 4.006 21 N -0.939 5.939 22 Si 0.973 3.027 23 H -0.261 1.261 24 H -0.289 1.289 25 H -0.260 1.260 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.196 0.804 30 H 0.158 0.842 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.098 0.902 41 H -0.027 1.027 42 H -0.024 1.024 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.946 -16.001 -18.250 24.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.127 5.127 3 N -0.169 5.169 4 C -0.151 4.151 5 C -0.329 4.329 6 C -0.008 4.008 7 C 0.100 3.900 8 H 0.131 0.869 9 C -0.168 4.168 10 C -0.148 4.148 11 C -0.171 4.171 12 C -0.022 4.022 13 N -0.348 5.348 14 C 0.290 3.710 15 O -0.427 6.427 16 C -0.153 4.153 17 C 0.015 3.985 18 C -0.581 4.581 19 H 0.095 0.905 20 C -0.204 4.204 21 N -0.579 5.579 22 Si 0.797 3.203 23 H -0.186 1.186 24 H -0.215 1.215 25 H -0.185 1.185 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.133 0.867 29 H 0.213 0.787 30 H 0.176 0.824 31 H 0.109 0.891 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.118 0.882 40 H 0.116 0.884 41 H -0.009 1.009 42 H -0.006 1.006 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.377 -14.297 -18.187 23.137 hybrid contribution 0.330 0.285 1.278 1.350 sum 0.707 -14.013 -16.909 21.972 Atomic orbital electron populations 1.22059 0.75261 1.05096 1.02178 1.48072 1.06086 1.03114 1.55463 1.77119 1.03022 1.10182 1.26605 1.24027 0.95161 0.95955 0.99992 1.21264 0.96451 0.95016 1.20138 1.20913 0.91438 0.90224 0.98208 1.19985 0.95194 0.88579 0.86203 0.86892 1.22154 0.99389 0.99470 0.95821 1.21503 0.99977 0.94618 0.98655 1.21958 0.97885 1.03708 0.93540 1.22104 0.96840 0.82893 1.00361 1.48403 1.50631 1.16648 1.19158 1.21330 0.82998 0.82698 0.83967 1.90836 1.46548 1.29449 1.75862 1.21609 0.98693 1.01044 0.93955 1.18574 0.94527 0.92170 0.93194 1.21674 1.24273 1.04336 1.07811 0.90542 1.26152 0.97886 0.94640 1.01686 1.70193 1.42749 1.09142 1.35800 0.85384 0.79160 0.77780 0.78003 1.18551 1.21505 1.18477 0.93872 0.89449 0.86713 0.78699 0.82407 0.89071 0.92030 0.89909 0.89605 0.87884 0.92231 0.89128 0.89095 0.88245 0.88419 1.00882 1.00590 0.92962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.10 9.64 127.77 1.23 4.33 16 2 N -0.34 -12.75 2.53 -356.03 -0.90 -13.65 16 3 N -0.35 -14.37 12.58 -57.02 -0.72 -15.09 16 4 C 0.03 1.17 12.03 85.24 1.03 2.20 16 5 C -0.30 -9.69 10.62 21.99 0.23 -9.45 16 6 C 0.12 3.88 3.41 41.40 0.14 4.03 16 7 C 0.20 4.65 3.04 44.23 0.13 4.78 16 8 H 0.11 2.14 8.12 -2.39 -0.02 2.12 16 9 C -0.13 -2.02 5.24 30.68 0.16 -1.86 16 10 C -0.11 -1.06 5.88 30.62 0.18 -0.88 16 11 C -0.13 -1.47 6.08 30.67 0.19 -1.28 16 12 C 0.10 1.62 6.35 86.36 0.55 2.17 16 13 N -0.61 -15.55 2.92 -799.17 -2.33 -17.89 16 14 C 0.50 18.74 5.88 87.65 0.52 19.25 16 15 O -0.55 -26.13 10.61 -3.03 -0.03 -26.16 16 16 C -0.11 -4.50 4.00 29.85 0.12 -4.38 16 17 C 0.05 2.98 4.26 29.85 0.13 3.11 16 18 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 19 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 20 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 21 N -0.94 -60.91 13.29 21.45 0.28 -60.63 16 22 Si 0.97 44.58 29.54 68.60 2.03 46.60 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 25 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 26 H 0.04 1.72 6.89 -2.39 -0.02 1.70 16 27 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.11 2.87 4.72 -2.39 -0.01 2.86 16 29 H 0.20 5.50 8.06 -2.91 -0.02 5.48 16 30 H 0.16 4.13 8.06 -2.91 -0.02 4.11 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.10 4.94 -2.39 -0.01 1.09 16 33 H 0.08 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.09 0.60 8.14 -2.39 -0.02 0.59 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.58 5.93 -2.39 -0.01 1.56 16 39 H 0.10 3.47 7.94 -2.39 -0.02 3.45 16 40 H 0.10 3.47 7.69 -2.39 -0.02 3.45 16 41 H -0.03 -1.78 8.10 -2.38 -0.02 -1.80 16 42 H -0.02 -1.57 8.10 -2.39 -0.02 -1.59 16 43 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -84.58 335.37 4.62 -79.96 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 1.00 Total: 15.57 kcal Atomic # 6 Polarization: -14.02 SS G_CDS: 5.30 Total: -8.72 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -3.67 Total: -107.25 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -0.03 Total: -26.16 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -84.58 4.62 -79.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330883875.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.234 kcal (2) G-P(sol) polarization free energy of solvation -84.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds