Wall clock time and date at job start Tue Mar 31 2020 07:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36393 * 124.93271 * 2 1 4 4 C 1.34546 * 108.85294 * 179.74099 * 3 2 1 5 5 C 1.46546 * 106.48206 * 0.43841 * 4 3 2 6 6 C 1.47623 * 126.89158 * 179.82595 * 5 4 3 7 7 O 1.35257 * 119.99842 * 179.68517 * 6 5 4 8 8 N 1.30209 * 119.99812 * 359.68650 * 6 5 4 9 9 C 1.46500 * 119.99503 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47129 * 115.00170 * 9 8 6 11 11 C 1.53042 * 109.45812 * 295.06375 * 10 9 8 12 12 C 1.53182 * 109.31181 * 178.61313 * 11 10 9 13 13 N 1.46928 * 108.77627 * 54.63602 * 12 11 10 14 14 C 1.36942 * 120.63249 * 126.41239 * 13 12 11 15 15 H 1.08001 * 119.99387 * 331.82460 * 14 13 12 16 16 C 1.38805 * 120.00113 * 151.82356 * 14 13 12 17 17 N 1.31615 * 120.00274 * 343.08168 * 16 14 13 18 18 Si 1.86802 * 119.99820 * 163.07955 * 16 14 13 19 19 H 1.48497 * 109.47279 * 60.00238 * 18 16 14 20 20 H 1.48501 * 109.47059 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47429 * 299.99770 * 18 16 14 22 22 C 1.46922 * 118.73801 * 306.39005 * 13 12 11 23 23 C 1.53033 * 109.46012 * 174.99826 * 10 9 8 24 24 C 1.35462 * 124.93799 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47276 * 269.95870 * 1 2 3 26 26 H 1.08997 * 109.46845 * 29.96622 * 1 2 3 27 27 H 1.09007 * 109.46571 * 149.95795 * 1 2 3 28 28 H 1.07995 * 125.57200 * 0.06917 * 3 2 1 29 29 H 1.08002 * 126.75628 * 180.26013 * 4 3 2 30 30 H 0.96704 * 114.00173 * 359.97438 * 7 6 5 31 31 H 1.08994 * 109.47356 * 354.99547 * 9 8 6 32 32 H 1.09003 * 109.46864 * 234.99528 * 9 8 6 33 33 H 1.08999 * 109.45786 * 55.02351 * 10 9 8 34 34 H 1.08994 * 109.49520 * 298.56886 * 11 10 9 35 35 H 1.09007 * 109.49553 * 58.66030 * 11 10 9 36 36 H 1.09004 * 109.59201 * 294.84765 * 12 11 10 37 37 H 1.09002 * 109.70612 * 174.48909 * 12 11 10 38 38 H 0.96999 * 120.00042 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.58735 * 293.81677 * 22 13 12 40 40 H 1.09005 * 109.70353 * 173.46085 * 22 13 12 41 41 H 1.09005 * 109.49946 * 301.33184 * 23 10 9 42 42 H 1.08995 * 109.50019 * 61.42979 * 23 10 9 43 43 H 1.07995 * 125.84249 * 359.94799 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2460 1.1182 0.0000 4 6 3.5388 0.7455 0.0058 5 6 3.5491 -0.7199 -0.0012 6 6 4.7360 -1.5977 -0.0020 7 8 4.5831 -2.9416 -0.0024 8 7 5.9300 -1.0782 -0.0024 9 6 7.1078 -1.9494 -0.0038 10 6 7.8795 -1.7616 -1.3115 11 6 7.0196 -2.2389 -2.4841 12 6 7.7816 -2.0173 -3.7943 13 7 9.0904 -2.6779 -3.6978 14 6 9.4920 -3.5738 -4.6525 15 1 8.7569 -4.1442 -5.2009 16 6 10.8436 -3.7486 -4.9154 17 7 11.7145 -2.8483 -4.5113 18 14 11.4266 -5.2617 -5.8428 19 1 10.7929 -5.2942 -7.1854 20 1 12.9030 -5.2113 -5.9940 21 1 11.0474 -6.4824 -5.0868 22 6 9.9604 -2.3587 -2.5577 23 6 9.1739 -2.5765 -1.2612 24 6 2.2408 -1.1105 -0.0005 25 1 -0.3633 -0.0007 1.0276 26 1 -0.3633 0.8903 -0.5133 27 1 -0.3633 -0.8897 -0.5145 28 1 1.8856 2.1362 0.0011 29 1 4.3995 1.3980 0.0112 30 1 3.6609 -3.2326 -0.0016 31 1 6.7912 -2.9886 0.0852 32 1 7.7510 -1.6922 0.8378 33 1 8.1195 -0.7065 -1.4432 34 1 6.7999 -3.2999 -2.3659 35 1 6.0875 -1.6741 -2.5052 36 1 7.9227 -0.9491 -3.9589 37 1 7.2176 -2.4434 -4.6241 38 1 12.6590 -2.9704 -4.6954 39 1 10.2792 -1.3183 -2.6214 40 1 10.8344 -3.0101 -2.5686 41 1 9.7754 -2.2519 -0.4120 42 1 8.9339 -3.6343 -1.1545 43 1 1.8852 -2.1302 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331058785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:30 Heat of formation + Delta-G solvation = 40.046867 kcal Electronic energy + Delta-G solvation = -23007.738935 eV Core-core repulsion = 19668.612288 eV Total energy + Delta-G solvation = -3339.126647 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.29644 -38.71723 -37.42284 -34.51032 -33.25055 -32.33863 -30.58965 -29.58848 -29.32641 -27.44308 -26.07186 -24.03952 -22.25646 -21.79652 -20.72406 -20.14545 -19.95811 -18.82220 -18.28732 -16.60934 -16.00704 -15.66921 -15.45854 -14.72771 -14.48663 -14.36388 -13.88067 -13.50428 -13.33607 -13.28684 -13.03783 -12.93566 -12.64203 -12.45940 -12.35798 -12.10266 -11.94933 -11.48293 -11.12543 -10.90385 -10.59987 -10.44827 -10.08860 -10.02795 -9.75438 -9.59368 -9.30123 -9.22911 -9.12408 -8.63907 -8.33710 -8.04600 -6.50571 -5.65777 -3.07449 1.55316 2.29831 2.55961 3.40291 3.45896 3.50900 3.52841 3.92360 4.25604 4.52613 4.55951 4.60437 4.68373 4.79541 4.93763 5.21652 5.45595 5.52963 5.61079 5.66239 5.80482 5.85081 5.93035 6.08660 6.21090 6.27633 6.42317 6.48348 6.56431 6.58594 6.77622 6.83232 6.85184 6.93077 6.98901 7.05913 7.10005 7.23665 7.55864 7.65323 7.82194 7.91266 8.26169 8.59219 9.35375 9.99706 10.58050 11.42636 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.002967 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.946108 B = 9433.899963 C = 9649.658036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.449 5.449 3 C -0.022 4.022 4 C -0.139 4.139 5 C -0.165 4.165 6 C 0.393 3.607 7 O -0.511 6.511 8 N -0.518 5.518 9 C 0.051 3.949 10 C -0.069 4.069 11 C -0.119 4.119 12 C 0.147 3.853 13 N -0.593 5.593 14 C -0.248 4.248 15 H 0.063 0.937 16 C 0.000 4.000 17 N -0.904 5.904 18 Si 0.902 3.098 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.173 3.827 23 C -0.134 4.134 24 C 0.018 3.982 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.389 0.611 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.045 0.955 36 H 0.015 0.985 37 H 0.048 0.952 38 H 0.253 0.747 39 H 0.016 0.984 40 H 0.085 0.915 41 H 0.047 0.953 42 H 0.052 0.948 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.991 5.421 12.213 27.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.125 5.125 3 C -0.149 4.149 4 C -0.163 4.163 5 C -0.174 4.174 6 C 0.167 3.833 7 O -0.306 6.306 8 N -0.252 5.252 9 C -0.078 4.078 10 C -0.088 4.088 11 C -0.159 4.159 12 C 0.021 3.979 13 N -0.316 5.316 14 C -0.378 4.378 15 H 0.081 0.919 16 C -0.198 4.198 17 N -0.549 5.549 18 Si 0.732 3.268 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.211 1.211 22 C 0.047 3.953 23 C -0.174 4.174 24 C -0.117 4.117 25 H 0.092 0.908 26 H 0.103 0.897 27 H 0.102 0.898 28 H 0.184 0.816 29 H 0.169 0.831 30 H 0.241 0.759 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.034 0.966 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -23.067 6.087 12.169 26.781 hybrid contribution -0.401 -1.679 -0.457 1.785 sum -23.467 4.409 11.712 26.596 Atomic orbital electron populations 1.22075 0.77051 1.04589 1.03319 1.43610 1.06447 1.05725 1.56758 1.21809 0.90538 0.91227 1.11294 1.21971 0.95835 0.92887 1.05628 1.19194 0.89449 0.94003 1.14801 1.21414 0.91905 0.78766 0.91204 1.85046 1.33340 1.22099 1.90080 1.72963 0.96842 1.33704 1.21705 1.22062 0.91325 0.95695 0.98726 1.21009 0.95076 1.00116 0.92602 1.21947 0.97317 0.99919 0.96684 1.20881 0.87744 0.95088 0.94204 1.44050 1.15009 1.48630 1.23894 1.19154 0.90931 1.13360 1.14371 0.91949 1.25031 0.96993 0.98161 0.99657 1.70031 1.01624 1.32946 1.50313 0.86382 0.77397 0.83344 0.79723 1.20990 1.21682 1.21132 1.20741 0.93067 0.98589 0.82894 1.22213 0.95928 0.99053 1.00177 1.21658 0.89879 0.91765 1.08371 0.90843 0.89653 0.89770 0.81646 0.83146 0.75878 0.93176 0.91040 0.91520 0.92997 0.93636 0.96714 0.93308 0.93705 0.96568 0.89661 0.93451 0.92939 0.81586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.21 11.05 59.85 0.66 0.87 16 2 N -0.45 -3.21 3.11 -124.37 -0.39 -3.60 16 3 C -0.02 -0.19 11.34 -16.83 -0.19 -0.38 16 4 C -0.14 -1.57 10.92 -37.54 -0.41 -1.98 16 5 C -0.17 -1.94 6.29 -103.33 -0.65 -2.59 16 6 C 0.39 5.63 7.79 -14.41 -0.11 5.51 16 7 O -0.51 -6.50 12.01 -17.46 -0.21 -6.71 16 8 N -0.52 -8.85 9.81 -59.29 -0.58 -9.43 16 9 C 0.05 0.91 5.72 -4.04 -0.02 0.89 16 10 C -0.07 -1.38 2.36 -90.58 -0.21 -1.60 16 11 C -0.12 -2.47 5.26 -26.62 -0.14 -2.61 16 12 C 0.15 3.48 6.52 -3.72 -0.02 3.46 16 13 N -0.59 -16.16 2.99 -172.32 -0.52 -16.68 16 14 C -0.25 -7.26 9.58 -15.06 -0.14 -7.40 16 15 H 0.06 1.79 7.89 -52.49 -0.41 1.37 16 16 C 0.00 -0.01 4.92 -17.43 -0.09 -0.09 16 17 N -0.90 -27.52 11.19 55.49 0.62 -26.90 16 18 Si 0.90 22.62 29.59 -169.99 -5.03 17.59 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 21 H -0.28 -7.07 7.11 56.52 0.40 -6.66 16 22 C 0.17 4.48 5.30 -3.71 -0.02 4.46 16 23 C -0.13 -2.87 5.36 -26.61 -0.14 -3.01 16 24 C 0.02 0.15 10.76 -16.56 -0.18 -0.03 16 25 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 26 H 0.08 0.16 8.13 -51.93 -0.42 -0.27 16 27 H 0.08 0.14 8.13 -51.93 -0.42 -0.28 16 28 H 0.17 0.91 8.06 -52.49 -0.42 0.48 16 29 H 0.15 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.39 2.70 7.57 45.56 0.34 3.05 16 31 H 0.05 0.92 6.74 -51.93 -0.35 0.57 16 32 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 34 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.04 0.90 7.54 -51.92 -0.39 0.51 16 36 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 1.13 7.93 -51.93 -0.41 0.71 16 38 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.09 2.43 6.07 -51.93 -0.31 2.11 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.17 0.72 7.32 -52.49 -0.38 0.34 16 LS Contribution 350.07 15.07 5.28 5.28 Total: -1.00 -36.08 350.07 -8.63 -44.71 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -6.13 Total: 0.24 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.67 Total: -4.50 kcal Atomic # 7 Polarization: -55.74 SS G_CDS: -0.86 Total: -56.60 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.21 Total: -6.71 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.03 Total: 17.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.08 -8.63 -44.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331058785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.753 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds