Wall clock time and date at job start Tue Mar 31 2020 07:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36393 * 124.93271 * 2 1 4 4 C 1.34546 * 108.85294 * 179.74099 * 3 2 1 5 5 C 1.46546 * 106.48206 * 0.43841 * 4 3 2 6 6 C 1.47623 * 126.89158 * 179.82595 * 5 4 3 7 7 O 1.35257 * 119.99842 * 179.68517 * 6 5 4 8 8 N 1.30209 * 119.99812 * 359.68650 * 6 5 4 9 9 C 1.46500 * 119.99503 * 180.02562 * 8 6 5 10 10 C 1.53005 * 109.47129 * 115.00170 * 9 8 6 11 11 C 1.53042 * 109.45812 * 295.06375 * 10 9 8 12 12 C 1.53182 * 109.31181 * 178.61313 * 11 10 9 13 13 N 1.46928 * 108.77627 * 54.63602 * 12 11 10 14 14 C 1.36942 * 120.63249 * 126.41239 * 13 12 11 15 15 H 1.08001 * 119.99387 * 331.82460 * 14 13 12 16 16 C 1.38805 * 120.00113 * 151.82356 * 14 13 12 17 17 N 1.31615 * 120.00274 * 343.08168 * 16 14 13 18 18 Si 1.86802 * 119.99820 * 163.07955 * 16 14 13 19 19 H 1.48497 * 109.47279 * 60.00238 * 18 16 14 20 20 H 1.48501 * 109.47059 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47429 * 299.99770 * 18 16 14 22 22 C 1.46922 * 118.73801 * 306.39005 * 13 12 11 23 23 C 1.53033 * 109.46012 * 174.99826 * 10 9 8 24 24 C 1.35462 * 124.93799 * 180.02562 * 2 1 3 25 25 H 1.08996 * 109.47276 * 269.95870 * 1 2 3 26 26 H 1.08997 * 109.46845 * 29.96622 * 1 2 3 27 27 H 1.09007 * 109.46571 * 149.95795 * 1 2 3 28 28 H 1.07995 * 125.57200 * 0.06917 * 3 2 1 29 29 H 1.08002 * 126.75628 * 180.26013 * 4 3 2 30 30 H 0.96704 * 114.00173 * 359.97438 * 7 6 5 31 31 H 1.08994 * 109.47356 * 354.99547 * 9 8 6 32 32 H 1.09003 * 109.46864 * 234.99528 * 9 8 6 33 33 H 1.08999 * 109.45786 * 55.02351 * 10 9 8 34 34 H 1.08994 * 109.49520 * 298.56886 * 11 10 9 35 35 H 1.09007 * 109.49553 * 58.66030 * 11 10 9 36 36 H 1.09004 * 109.59201 * 294.84765 * 12 11 10 37 37 H 1.09002 * 109.70612 * 174.48909 * 12 11 10 38 38 H 0.96999 * 120.00042 * 180.02562 * 17 16 14 39 39 H 1.09000 * 109.58735 * 293.81677 * 22 13 12 40 40 H 1.09005 * 109.70353 * 173.46085 * 22 13 12 41 41 H 1.09005 * 109.49946 * 301.33184 * 23 10 9 42 42 H 1.08995 * 109.50019 * 61.42979 * 23 10 9 43 43 H 1.07995 * 125.84249 * 359.94799 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2460 1.1182 0.0000 4 6 3.5388 0.7455 0.0058 5 6 3.5491 -0.7199 -0.0012 6 6 4.7360 -1.5977 -0.0020 7 8 4.5831 -2.9416 -0.0024 8 7 5.9300 -1.0782 -0.0024 9 6 7.1078 -1.9494 -0.0038 10 6 7.8795 -1.7616 -1.3115 11 6 7.0196 -2.2389 -2.4841 12 6 7.7816 -2.0173 -3.7943 13 7 9.0904 -2.6779 -3.6978 14 6 9.4920 -3.5738 -4.6525 15 1 8.7569 -4.1442 -5.2009 16 6 10.8436 -3.7486 -4.9154 17 7 11.7145 -2.8483 -4.5113 18 14 11.4266 -5.2617 -5.8428 19 1 10.7929 -5.2942 -7.1854 20 1 12.9030 -5.2113 -5.9940 21 1 11.0474 -6.4824 -5.0868 22 6 9.9604 -2.3587 -2.5577 23 6 9.1739 -2.5765 -1.2612 24 6 2.2408 -1.1105 -0.0005 25 1 -0.3633 -0.0007 1.0276 26 1 -0.3633 0.8903 -0.5133 27 1 -0.3633 -0.8897 -0.5145 28 1 1.8856 2.1362 0.0011 29 1 4.3995 1.3980 0.0112 30 1 3.6609 -3.2326 -0.0016 31 1 6.7912 -2.9886 0.0852 32 1 7.7510 -1.6922 0.8378 33 1 8.1195 -0.7065 -1.4432 34 1 6.7999 -3.2999 -2.3659 35 1 6.0875 -1.6741 -2.5052 36 1 7.9227 -0.9491 -3.9589 37 1 7.2176 -2.4434 -4.6241 38 1 12.6590 -2.9704 -4.6954 39 1 10.2792 -1.3183 -2.6214 40 1 10.8344 -3.0101 -2.5686 41 1 9.7754 -2.2519 -0.4120 42 1 8.9339 -3.6343 -1.1545 43 1 1.8852 -2.1302 -0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331058785.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:29 Heat of formation + Delta-G solvation = 13.583130 kcal Electronic energy + Delta-G solvation = -23008.886489 eV Core-core repulsion = 19668.612288 eV Total energy + Delta-G solvation = -3340.274201 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.94556 -39.94152 -39.04698 -36.11147 -34.42094 -33.53266 -32.39499 -31.40049 -30.17467 -28.67428 -27.13285 -25.72285 -23.84980 -23.39227 -22.11043 -21.02170 -20.86713 -20.57692 -19.01070 -18.70738 -16.99519 -16.82615 -16.42853 -16.20167 -15.82464 -15.56030 -15.34348 -14.98281 -14.89105 -14.72634 -14.17219 -14.15158 -13.89503 -13.53867 -13.27367 -13.04232 -13.01991 -12.89520 -12.85788 -12.74260 -12.55145 -12.35856 -12.02857 -11.89465 -11.68332 -11.25544 -11.12879 -10.54791 -10.45191 -10.37811 -9.31726 -8.95890 -8.68660 -7.87416 -5.34195 0.73854 1.45366 1.48957 1.56057 1.57122 2.06311 2.46905 2.50988 3.01230 3.26098 3.45312 3.68242 3.92035 4.06790 4.08319 4.16688 4.19282 4.28984 4.45320 4.52497 4.55851 4.65184 4.68202 4.73461 4.83073 4.85553 4.88555 4.93201 5.02039 5.14659 5.19037 5.27754 5.29708 5.32326 5.40019 5.52108 5.63803 5.75037 5.81846 6.16927 6.38308 6.43951 6.84647 7.13519 7.17612 7.84167 8.38655 9.19232 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.031561 B = 0.002967 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.946108 B = 9433.899963 C = 9649.658036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.445 5.445 3 C -0.012 4.012 4 C -0.178 4.178 5 C -0.213 4.213 6 C 0.411 3.589 7 O -0.521 6.521 8 N -0.567 5.567 9 C 0.066 3.934 10 C -0.063 4.063 11 C -0.099 4.099 12 C 0.144 3.856 13 N -0.610 5.610 14 C -0.268 4.268 15 H 0.065 0.935 16 C -0.053 4.053 17 N -0.937 5.937 18 Si 0.973 3.027 19 H -0.274 1.274 20 H -0.291 1.291 21 H -0.277 1.277 22 C 0.179 3.821 23 C -0.120 4.120 24 C 0.046 3.954 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.102 0.898 28 H 0.193 0.807 29 H 0.130 0.870 30 H 0.414 0.586 31 H 0.044 0.956 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.056 0.944 36 H 0.006 0.994 37 H 0.051 0.949 38 H 0.251 0.749 39 H -0.007 1.007 40 H 0.056 0.944 41 H 0.068 0.932 42 H 0.049 0.951 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.426 4.433 12.705 30.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.119 5.119 3 C -0.140 4.140 4 C -0.202 4.202 5 C -0.222 4.222 6 C 0.187 3.813 7 O -0.319 6.319 8 N -0.303 5.303 9 C -0.063 4.063 10 C -0.082 4.082 11 C -0.138 4.138 12 C 0.019 3.981 13 N -0.334 5.334 14 C -0.398 4.398 15 H 0.083 0.917 16 C -0.248 4.248 17 N -0.583 5.583 18 Si 0.800 3.200 19 H -0.199 1.199 20 H -0.217 1.217 21 H -0.203 1.203 22 C 0.054 3.946 23 C -0.160 4.160 24 C -0.091 4.091 25 H 0.106 0.894 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.210 0.790 29 H 0.148 0.852 30 H 0.270 0.730 31 H 0.063 0.937 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.024 0.976 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.011 0.989 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.068 0.932 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -26.584 5.100 12.669 29.887 hybrid contribution 0.441 -1.317 -0.611 1.517 sum -26.144 3.783 12.059 29.038 Atomic orbital electron populations 1.22426 0.74079 1.06309 1.04827 1.43993 1.08196 1.05008 1.54730 1.22134 0.89711 0.92796 1.09331 1.22010 0.96831 0.93155 1.08220 1.19244 0.90110 0.93903 1.18942 1.21743 0.92034 0.79542 0.88015 1.84991 1.35941 1.21424 1.89509 1.73003 0.97359 1.33680 1.26238 1.21748 0.92046 0.95584 0.96960 1.20894 0.94524 0.98689 0.94065 1.21700 0.97303 0.99628 0.95143 1.20997 0.86770 0.94240 0.96105 1.44319 1.16096 1.48895 1.24099 1.19504 0.91447 1.13966 1.14864 0.91724 1.25881 0.96971 1.01001 1.00920 1.70200 1.01662 1.34734 1.51659 0.85265 0.76569 0.79486 0.78666 1.19927 1.21730 1.20333 1.20565 0.92847 0.96309 0.84923 1.22014 0.96474 0.99210 0.98278 1.22224 0.88591 0.93675 1.04624 0.89382 0.88280 0.87894 0.78986 0.85212 0.73008 0.93737 0.90936 0.92961 0.93491 0.92488 0.97570 0.93007 0.93985 0.98921 0.92556 0.91375 0.93203 0.77523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.09 11.05 127.77 1.41 1.50 16 2 N -0.44 -4.73 3.11 -547.40 -1.70 -6.43 16 3 C -0.01 -0.18 11.34 83.14 0.94 0.76 16 4 C -0.18 -4.00 10.92 23.59 0.26 -3.75 16 5 C -0.21 -4.71 6.29 -19.03 -0.12 -4.83 16 6 C 0.41 11.44 7.79 87.41 0.68 12.12 16 7 O -0.52 -12.28 12.01 -85.40 -1.03 -13.30 16 8 N -0.57 -19.54 9.81 -455.62 -4.47 -24.01 16 9 C 0.07 2.37 5.72 86.38 0.49 2.87 16 10 C -0.06 -2.55 2.36 -10.77 -0.03 -2.57 16 11 C -0.10 -4.10 5.26 30.67 0.16 -3.94 16 12 C 0.14 6.97 6.52 86.36 0.56 7.53 16 13 N -0.61 -34.13 2.99 -699.11 -2.09 -36.23 16 14 C -0.27 -15.89 9.58 84.03 0.81 -15.08 16 15 H 0.07 3.72 7.89 -2.91 -0.02 3.70 16 16 C -0.05 -3.11 4.92 84.86 0.42 -2.69 16 17 N -0.94 -58.54 11.19 21.65 0.24 -58.30 16 18 Si 0.97 46.95 29.59 68.60 2.03 48.98 16 19 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 22 C 0.18 9.65 5.30 86.36 0.46 10.11 16 23 C -0.12 -5.24 5.36 30.67 0.16 -5.08 16 24 C 0.05 0.58 10.76 83.74 0.90 1.48 16 25 H 0.09 -0.06 8.14 -2.39 -0.02 -0.07 16 26 H 0.10 -0.08 8.13 -2.39 -0.02 -0.09 16 27 H 0.10 -0.18 8.13 -2.38 -0.02 -0.20 16 28 H 0.19 1.59 8.06 -2.91 -0.02 1.56 16 29 H 0.13 3.32 8.06 -2.91 -0.02 3.29 16 30 H 0.41 4.45 7.57 -74.05 -0.56 3.89 16 31 H 0.04 1.61 6.74 -2.39 -0.02 1.59 16 32 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.06 2.24 7.54 -2.38 -0.02 2.22 16 36 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.05 2.41 7.93 -2.39 -0.02 2.40 16 38 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 39 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 40 H 0.06 3.33 6.07 -2.38 -0.01 3.32 16 41 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 42 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.21 0.70 7.32 -2.91 -0.02 0.68 16 Total: -1.00 -80.92 350.07 0.53 -80.39 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 0.44 Total: 10.47 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: 7.11 Total: -1.57 kcal Atomic # 7 Polarization: -116.94 SS G_CDS: -8.02 Total: -124.96 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -1.03 Total: -13.30 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -80.92 0.53 -80.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331058785.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.974 kcal (2) G-P(sol) polarization free energy of solvation -80.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds