Wall clock time and date at job start Tue Mar 31 2020 07:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34451 * 125.78990 * 2 1 4 4 C 1.37826 * 107.42646 * 180.02562 * 3 2 1 5 5 C 1.47748 * 126.37782 * 180.02562 * 4 3 2 6 6 O 1.35244 * 120.00004 * 0.02639 * 5 4 3 7 7 N 1.30142 * 120.00186 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00153 * 174.06234 * 7 5 4 9 9 C 1.50694 * 109.47209 * 245.13362 * 8 7 5 10 10 H 1.08001 * 119.99961 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99819 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00284 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99858 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46986 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46931 * 120.00441 * 13 11 9 16 16 H 1.48503 * 109.47160 * 240.00541 * 13 11 9 17 17 C 1.41154 * 107.24606 * 0.02562 * 4 3 2 18 18 C 1.50697 * 125.96918 * 179.97438 * 17 4 3 19 19 C 1.52994 * 109.47466 * 240.02697 * 18 17 4 20 20 C 1.52995 * 109.47426 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.47265 * 59.99727 * 20 19 18 22 22 C 1.52999 * 109.46885 * 300.00237 * 21 20 19 23 23 C 1.52995 * 109.47151 * 60.00150 * 22 21 20 24 24 N 1.30509 * 108.06265 * 359.97438 * 17 4 3 25 25 H 1.09007 * 109.46764 * 89.99534 * 1 2 3 26 26 H 1.08993 * 109.47627 * 209.99624 * 1 2 3 27 27 H 1.09007 * 109.46897 * 330.00582 * 1 2 3 28 28 H 1.07998 * 126.28683 * 359.77386 * 3 2 1 29 29 H 0.96696 * 113.99513 * 174.47938 * 6 5 4 30 30 H 1.08998 * 109.46970 * 5.13983 * 8 7 5 31 31 H 1.09006 * 109.46936 * 125.13395 * 8 7 5 32 32 H 0.96999 * 120.00276 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.47260 * 0.03075 * 18 17 4 34 34 H 1.09000 * 109.47189 * 300.00421 * 19 18 17 35 35 H 1.09000 * 109.47277 * 60.00024 * 19 18 17 36 36 H 1.09000 * 109.47059 * 300.00230 * 20 19 18 37 37 H 1.09000 * 109.47622 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47009 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46671 * 60.00265 * 21 20 19 40 40 H 1.09000 * 109.47489 * 299.99527 * 22 21 20 41 41 H 1.09000 * 109.47041 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47411 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47433 * 59.99342 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0906 0.0000 4 6 3.5594 0.6564 -0.0006 5 6 4.7658 1.5093 -0.0003 6 8 4.6419 2.8561 0.0012 7 7 5.9478 0.9647 -0.0014 8 6 7.1411 1.8043 -0.1323 9 6 7.8394 1.4861 -1.4292 10 1 7.4346 0.7339 -2.0901 11 6 8.9946 2.1559 -1.7726 12 7 9.4873 3.0722 -0.9682 13 14 9.8599 1.7619 -3.3806 14 1 9.1088 0.7020 -4.1001 15 1 9.9203 2.9837 -4.2225 16 1 11.2383 1.2871 -3.0976 17 6 3.5319 -0.7549 -0.0016 18 6 4.7340 -1.6636 -0.0030 19 6 4.7055 -2.5452 -1.2531 20 6 5.9257 -3.4682 -1.2542 21 6 5.8975 -4.3524 -0.0058 22 6 5.9260 -3.4708 1.2443 23 6 4.7058 -2.5478 1.2454 24 7 2.2834 -1.1352 -0.0010 25 1 -0.3633 0.0001 -1.0278 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3633 0.8901 0.5138 28 1 1.9190 2.1182 -0.0034 29 1 5.4815 3.3281 0.0863 30 1 6.8490 2.8544 -0.1250 31 1 7.8159 1.6091 0.7012 32 1 10.3002 3.5432 -1.2095 33 1 5.6436 -1.0629 -0.0026 34 1 3.7960 -3.1458 -1.2534 35 1 4.7252 -1.9153 -2.1424 36 1 6.8354 -2.8678 -1.2536 37 1 5.9052 -4.0966 -2.1446 38 1 6.7670 -5.0097 -0.0064 39 1 4.9877 -4.9528 -0.0064 40 1 6.8358 -2.8704 1.2448 41 1 5.9055 -4.1006 2.1336 42 1 4.7259 -1.9200 2.1362 43 1 3.7961 -3.1482 1.2448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331203917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:46 Heat of formation + Delta-G solvation = 31.766158 kcal Electronic energy + Delta-G solvation = -23796.467590 eV Core-core repulsion = 20456.981865 eV Total energy + Delta-G solvation = -3339.485726 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08599 -38.16345 -37.97228 -33.79139 -33.43599 -31.95089 -30.74731 -30.37751 -29.88773 -27.58178 -26.07549 -23.57029 -22.63267 -22.19629 -20.93533 -20.52050 -19.16680 -18.61627 -16.88299 -16.51588 -16.18703 -15.42418 -15.19627 -14.88519 -14.38234 -14.00265 -13.82845 -13.70872 -13.66216 -13.29987 -12.84417 -12.80729 -12.36345 -12.12604 -11.92782 -11.82825 -11.75836 -11.66794 -10.94638 -10.86098 -10.77504 -10.74696 -10.50136 -10.13042 -10.10182 -9.88128 -9.80751 -9.69341 -9.03386 -8.91317 -8.60608 -8.16252 -7.49796 -6.09908 -4.13006 1.85079 2.55483 2.56996 3.28249 3.35745 3.41841 3.91103 4.26982 4.42490 4.52563 4.88658 4.96223 5.03897 5.10860 5.14725 5.23902 5.24983 5.27567 5.45172 5.61433 5.66857 5.87102 5.88456 5.90198 5.92224 6.01603 6.12020 6.19045 6.33335 6.42042 6.53365 6.57910 6.65015 6.72679 6.73707 6.85663 6.96327 7.10864 7.29542 7.50024 7.55807 7.87984 7.94616 8.25019 8.89891 9.24570 9.54399 10.99395 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012237 B = 0.005650 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.622998 B = 4954.582897 C = 6475.961543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.377 5.377 3 C 0.085 3.915 4 C -0.172 4.172 5 C 0.374 3.626 6 O -0.539 6.539 7 N -0.554 5.554 8 C 0.179 3.821 9 C -0.503 4.503 10 H 0.065 0.935 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.900 3.100 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.282 1.282 17 C 0.139 3.861 18 C -0.028 4.028 19 C -0.102 4.102 20 C -0.120 4.120 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.102 4.102 24 N -0.305 5.305 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.404 0.596 30 H -0.008 1.008 31 H 0.045 0.955 32 H 0.263 0.737 33 H 0.142 0.858 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.069 0.931 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.159 -8.034 3.205 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.156 5.156 3 C -0.066 4.066 4 C -0.185 4.185 5 C 0.148 3.852 6 O -0.341 6.341 7 N -0.290 5.290 8 C 0.053 3.947 9 C -0.542 4.542 10 H 0.083 0.917 11 C -0.145 4.145 12 N -0.537 5.537 13 Si 0.728 3.272 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.208 1.208 17 C -0.028 4.028 18 C -0.049 4.049 19 C -0.140 4.140 20 C -0.157 4.157 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.140 4.140 24 N -0.126 5.126 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.198 0.802 29 H 0.264 0.736 30 H 0.009 0.991 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.135 -9.639 3.217 19.068 hybrid contribution 1.416 1.950 -0.861 2.559 sum -14.719 -7.689 2.356 16.773 Atomic orbital electron populations 1.21820 0.74290 1.04314 1.03258 1.48148 1.06545 1.03979 1.56937 1.22844 0.90388 0.93388 0.99960 1.18128 0.89311 0.91788 1.19292 1.21128 0.91283 0.79112 0.93666 1.84578 1.40659 1.18982 1.89911 1.72315 0.98743 1.38973 1.18982 1.19689 0.86746 0.89695 0.98611 1.21092 1.08340 1.21324 1.03413 0.91711 1.24993 0.97022 0.94974 0.97468 1.69946 1.21988 1.24913 1.36832 0.86390 0.79412 0.78273 0.83128 1.19523 1.21020 1.20831 1.22379 0.92834 0.92173 0.95446 1.20266 0.95400 0.94410 0.94777 1.21447 0.97811 0.97254 0.97483 1.21529 0.99243 0.97830 0.97118 1.21515 1.01016 0.97678 0.95155 1.21522 0.99060 0.97842 0.97192 1.21461 0.97920 0.97252 0.97349 1.77109 1.01347 1.07143 1.26967 0.90862 0.89372 0.89573 0.80219 0.73623 0.99106 0.93678 0.92786 0.84019 0.92510 0.92140 0.91018 0.92508 0.92487 0.92558 0.91229 0.92550 0.92356 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.82 11.45 59.85 0.69 1.50 16 2 N -0.38 -5.05 3.99 -67.60 -0.27 -5.32 16 3 C 0.08 1.23 11.34 -16.56 -0.19 1.04 16 4 C -0.17 -3.14 6.12 -105.06 -0.64 -3.78 16 5 C 0.37 7.76 7.99 -14.38 -0.11 7.64 16 6 O -0.54 -10.54 13.37 -17.43 -0.23 -10.77 16 7 N -0.55 -12.77 7.73 -60.45 -0.47 -13.23 16 8 C 0.18 4.64 6.04 -5.20 -0.03 4.61 16 9 C -0.50 -14.20 9.39 -34.44 -0.32 -14.52 16 10 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -26.05 13.29 55.43 0.74 -25.31 16 13 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 C 0.14 2.45 5.77 -82.05 -0.47 1.98 16 18 C -0.03 -0.48 2.52 -91.77 -0.23 -0.71 16 19 C -0.10 -1.60 5.19 -26.74 -0.14 -1.74 16 20 C -0.12 -1.70 5.92 -26.73 -0.16 -1.86 16 21 C -0.12 -1.47 5.92 -26.73 -0.16 -1.62 16 22 C -0.12 -1.60 5.92 -26.73 -0.16 -1.75 16 23 C -0.10 -1.52 5.18 -26.73 -0.14 -1.65 16 24 N -0.30 -4.94 12.51 33.88 0.42 -4.52 16 25 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.18 2.06 8.06 -52.49 -0.42 1.64 16 29 H 0.40 7.77 5.91 45.56 0.27 8.04 16 30 H -0.01 -0.21 5.29 -51.93 -0.27 -0.49 16 31 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 33 H 0.14 2.84 5.33 -51.93 -0.28 2.56 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -31.98 350.65 -7.88 -39.87 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: -6.17 Total: 6.78 kcal Atomic # 6 Polarization: -7.20 SS G_CDS: -2.17 Total: -9.37 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.42 Total: -48.38 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.23 Total: -10.77 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.98 -7.88 -39.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331203917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.636 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds