Wall clock time and date at job start Tue Mar 31 2020 07:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34451 * 125.78990 * 2 1 4 4 C 1.37826 * 107.42646 * 180.02562 * 3 2 1 5 5 C 1.47748 * 126.37782 * 180.02562 * 4 3 2 6 6 O 1.35244 * 120.00004 * 0.02639 * 5 4 3 7 7 N 1.30142 * 120.00186 * 180.02562 * 5 4 3 8 8 C 1.46495 * 120.00153 * 174.06234 * 7 5 4 9 9 C 1.50694 * 109.47209 * 245.13362 * 8 7 5 10 10 H 1.08001 * 119.99961 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99819 * 179.97438 * 9 8 7 12 12 N 1.31506 * 120.00284 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 119.99858 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.46986 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.46931 * 120.00441 * 13 11 9 16 16 H 1.48503 * 109.47160 * 240.00541 * 13 11 9 17 17 C 1.41154 * 107.24606 * 0.02562 * 4 3 2 18 18 C 1.50697 * 125.96918 * 179.97438 * 17 4 3 19 19 C 1.52994 * 109.47466 * 240.02697 * 18 17 4 20 20 C 1.52995 * 109.47426 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.47265 * 59.99727 * 20 19 18 22 22 C 1.52999 * 109.46885 * 300.00237 * 21 20 19 23 23 C 1.52995 * 109.47151 * 60.00150 * 22 21 20 24 24 N 1.30509 * 108.06265 * 359.97438 * 17 4 3 25 25 H 1.09007 * 109.46764 * 89.99534 * 1 2 3 26 26 H 1.08993 * 109.47627 * 209.99624 * 1 2 3 27 27 H 1.09007 * 109.46897 * 330.00582 * 1 2 3 28 28 H 1.07998 * 126.28683 * 359.77386 * 3 2 1 29 29 H 0.96696 * 113.99513 * 174.47938 * 6 5 4 30 30 H 1.08998 * 109.46970 * 5.13983 * 8 7 5 31 31 H 1.09006 * 109.46936 * 125.13395 * 8 7 5 32 32 H 0.96999 * 120.00276 * 179.97438 * 12 11 9 33 33 H 1.09000 * 109.47260 * 0.03075 * 18 17 4 34 34 H 1.09000 * 109.47189 * 300.00421 * 19 18 17 35 35 H 1.09000 * 109.47277 * 60.00024 * 19 18 17 36 36 H 1.09000 * 109.47059 * 300.00230 * 20 19 18 37 37 H 1.09000 * 109.47622 * 179.97438 * 20 19 18 38 38 H 1.09000 * 109.47009 * 180.02562 * 21 20 19 39 39 H 1.09000 * 109.46671 * 60.00265 * 21 20 19 40 40 H 1.09000 * 109.47489 * 299.99527 * 22 21 20 41 41 H 1.09000 * 109.47041 * 179.97438 * 22 21 20 42 42 H 1.09000 * 109.47411 * 179.97438 * 23 22 21 43 43 H 1.09000 * 109.47433 * 59.99342 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2513 1.0906 0.0000 4 6 3.5594 0.6564 -0.0006 5 6 4.7658 1.5093 -0.0003 6 8 4.6419 2.8561 0.0012 7 7 5.9478 0.9647 -0.0014 8 6 7.1411 1.8043 -0.1323 9 6 7.8394 1.4861 -1.4292 10 1 7.4346 0.7339 -2.0901 11 6 8.9946 2.1559 -1.7726 12 7 9.4873 3.0722 -0.9682 13 14 9.8599 1.7619 -3.3806 14 1 9.1088 0.7020 -4.1001 15 1 9.9203 2.9837 -4.2225 16 1 11.2383 1.2871 -3.0976 17 6 3.5319 -0.7549 -0.0016 18 6 4.7340 -1.6636 -0.0030 19 6 4.7055 -2.5452 -1.2531 20 6 5.9257 -3.4682 -1.2542 21 6 5.8975 -4.3524 -0.0058 22 6 5.9260 -3.4708 1.2443 23 6 4.7058 -2.5478 1.2454 24 7 2.2834 -1.1352 -0.0010 25 1 -0.3633 0.0001 -1.0278 26 1 -0.3634 -0.8899 0.5137 27 1 -0.3633 0.8901 0.5138 28 1 1.9190 2.1182 -0.0034 29 1 5.4815 3.3281 0.0863 30 1 6.8490 2.8544 -0.1250 31 1 7.8159 1.6091 0.7012 32 1 10.3002 3.5432 -1.2095 33 1 5.6436 -1.0629 -0.0026 34 1 3.7960 -3.1458 -1.2534 35 1 4.7252 -1.9153 -2.1424 36 1 6.8354 -2.8678 -1.2536 37 1 5.9052 -4.0966 -2.1446 38 1 6.7670 -5.0097 -0.0064 39 1 4.9877 -4.9528 -0.0064 40 1 6.8358 -2.8704 1.2448 41 1 5.9055 -4.1006 2.1336 42 1 4.7259 -1.9200 2.1362 43 1 3.7961 -3.1482 1.2448 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331203917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:08:45 Heat of formation + Delta-G solvation = 9.515144 kcal Electronic energy + Delta-G solvation = -23797.432466 eV Core-core repulsion = 20456.981865 eV Total energy + Delta-G solvation = -3340.450602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.30849 -39.81205 -39.16119 -35.55141 -34.82877 -33.75881 -31.96148 -31.56352 -31.16410 -29.27541 -27.34443 -25.30216 -23.93244 -23.38272 -22.40047 -21.85512 -20.44530 -19.88693 -18.62684 -18.32332 -17.73088 -16.64814 -16.48319 -16.37308 -16.01282 -15.31759 -15.12232 -14.97045 -14.92624 -14.49377 -14.33976 -13.97005 -13.82738 -13.62484 -13.38782 -13.02097 -13.00791 -12.95224 -12.79584 -12.69476 -12.17468 -12.06892 -11.95144 -11.77513 -11.68950 -11.32600 -11.03408 -10.99330 -10.75205 -10.49184 -10.12982 -9.93215 -9.06393 -8.24047 -6.37033 0.60300 1.16933 1.37844 1.39002 1.52783 1.56791 2.30329 2.46950 2.72848 3.06898 3.31727 3.66829 3.92166 3.98523 4.02605 4.06345 4.29717 4.47073 4.47157 4.49669 4.66177 4.69644 4.70999 4.73072 4.74724 4.81523 4.86906 4.92481 5.03508 5.16637 5.18969 5.28625 5.34905 5.36557 5.40145 5.49297 5.51139 5.61846 5.65647 5.80039 5.94809 6.05376 6.15970 6.69732 6.71935 7.27577 7.58316 8.83944 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012237 B = 0.005650 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.622998 B = 4954.582897 C = 6475.961543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.364 5.364 3 C 0.114 3.886 4 C -0.226 4.226 5 C 0.388 3.612 6 O -0.532 6.532 7 N -0.583 5.583 8 C 0.191 3.809 9 C -0.524 4.524 10 H 0.050 0.950 11 C 0.011 3.989 12 N -0.926 5.926 13 Si 0.967 3.033 14 H -0.270 1.270 15 H -0.274 1.274 16 H -0.273 1.273 17 C 0.129 3.871 18 C -0.031 4.031 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.118 4.118 23 C -0.093 4.093 24 N -0.316 5.316 25 H 0.091 0.909 26 H 0.097 0.903 27 H 0.120 0.880 28 H 0.216 0.784 29 H 0.404 0.596 30 H -0.012 1.012 31 H 0.014 0.986 32 H 0.268 0.732 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.037 0.963 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.047 0.953 41 H 0.078 0.922 42 H 0.046 0.954 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.478 -8.882 2.640 19.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.142 5.142 3 C -0.039 4.039 4 C -0.240 4.240 5 C 0.164 3.836 6 O -0.333 6.333 7 N -0.320 5.320 8 C 0.064 3.936 9 C -0.562 4.562 10 H 0.069 0.931 11 C -0.188 4.188 12 N -0.566 5.566 13 Si 0.791 3.209 14 H -0.194 1.194 15 H -0.199 1.199 16 H -0.199 1.199 17 C -0.038 4.038 18 C -0.052 4.052 19 C -0.133 4.133 20 C -0.157 4.157 21 C -0.147 4.147 22 C -0.155 4.155 23 C -0.131 4.131 24 N -0.137 5.137 25 H 0.109 0.891 26 H 0.116 0.884 27 H 0.139 0.861 28 H 0.232 0.768 29 H 0.264 0.736 30 H 0.006 0.994 31 H 0.032 0.968 32 H 0.077 0.923 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.056 0.944 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.500 -10.502 2.660 21.439 hybrid contribution 1.890 2.264 -0.646 3.019 sum -16.610 -8.238 2.014 18.650 Atomic orbital electron populations 1.22362 0.70679 1.06590 1.05160 1.48663 1.08381 1.02886 1.54245 1.23276 0.89072 0.94985 0.96597 1.18293 0.89857 0.92027 1.23792 1.21708 0.91711 0.79519 0.90700 1.84566 1.40515 1.18634 1.89565 1.72390 0.98634 1.37991 1.22971 1.19337 0.87785 0.89890 0.96630 1.21300 1.09275 1.21338 1.04305 0.93128 1.25820 0.97471 0.94597 1.00907 1.70040 1.22473 1.25576 1.38509 0.85366 0.78301 0.78309 0.78880 1.19437 1.19897 1.19861 1.22414 0.93479 0.92121 0.95824 1.20151 0.94160 0.94564 0.96315 1.21373 0.98950 0.97031 0.95916 1.21527 0.97298 0.97774 0.99063 1.21490 1.02563 0.97301 0.93383 1.21525 0.97348 0.97787 0.98858 1.21385 0.98985 0.97011 0.95754 1.77051 1.00893 1.08422 1.27356 0.89067 0.88395 0.86140 0.76750 0.73650 0.99427 0.96811 0.92329 0.87484 0.91396 0.94406 0.93605 0.90791 0.90919 0.90884 0.93376 0.90315 0.93550 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.45 127.77 1.46 2.50 16 2 N -0.36 -8.68 3.99 -367.80 -1.47 -10.14 16 3 C 0.11 3.03 11.34 84.19 0.95 3.98 16 4 C -0.23 -8.22 6.12 -20.15 -0.12 -8.34 16 5 C 0.39 16.57 7.99 87.46 0.70 17.27 16 6 O -0.53 -20.97 13.37 -85.27 -1.14 -22.12 16 7 N -0.58 -28.47 7.73 -459.32 -3.55 -32.02 16 8 C 0.19 10.50 6.04 85.63 0.52 11.02 16 9 C -0.52 -30.89 9.39 25.60 0.24 -30.65 16 10 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 11 C 0.01 0.63 5.46 84.66 0.46 1.10 16 12 N -0.93 -54.99 13.29 21.45 0.28 -54.71 16 13 Si 0.97 44.99 29.54 68.60 2.03 47.02 16 14 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 15 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 16 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 17 C 0.13 4.54 5.77 43.47 0.25 4.80 16 18 C -0.03 -1.11 2.52 -11.54 -0.03 -1.14 16 19 C -0.09 -3.03 5.19 30.59 0.16 -2.87 16 20 C -0.12 -3.41 5.92 30.59 0.18 -3.23 16 21 C -0.11 -2.64 5.92 30.60 0.18 -2.45 16 22 C -0.12 -3.14 5.92 30.59 0.18 -2.96 16 23 C -0.09 -2.80 5.18 30.59 0.16 -2.64 16 24 N -0.32 -9.76 12.51 -46.74 -0.58 -10.34 16 25 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 26 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.12 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.22 4.05 8.06 -2.91 -0.02 4.03 16 29 H 0.40 16.10 5.91 -74.06 -0.44 15.66 16 30 H -0.01 -0.62 5.29 -2.39 -0.01 -0.63 16 31 H 0.01 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.11 4.61 5.33 -2.39 -0.01 4.60 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 37 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -72.04 350.65 1.43 -70.60 By element: Atomic # 1 Polarization: 24.77 SS G_CDS: 0.57 Total: 25.33 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: 5.29 Total: -13.64 kcal Atomic # 7 Polarization: -101.89 SS G_CDS: -5.32 Total: -107.21 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -1.14 Total: -22.12 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -72.04 1.43 -70.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331203917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.119 kcal (2) G-P(sol) polarization free energy of solvation -72.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds