Wall clock time and date at job start Tue Mar 31 2020 07:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46494 * 120.00046 * 2 1 4 4 C 1.50695 * 109.47147 * 270.00094 * 3 2 1 5 5 C 1.34857 * 125.89501 * 95.02456 * 4 3 2 6 6 C 1.40892 * 107.41651 * 180.02562 * 5 4 3 7 7 C 1.34852 * 107.42036 * 0.02562 * 6 5 4 8 8 N 1.36347 * 108.21657 * 359.73634 * 7 6 5 9 9 C 1.46503 * 125.63804 * 180.26612 * 8 7 6 10 10 C 1.34771 * 119.99824 * 179.97438 * 2 1 3 11 11 O 1.21587 * 120.00134 * 185.55558 * 10 2 1 12 12 N 1.34779 * 120.00213 * 5.55608 * 10 2 1 13 13 C 1.46504 * 120.00013 * 185.02953 * 12 10 2 14 14 C 1.52998 * 109.46790 * 185.01241 * 13 12 10 15 15 C 1.50702 * 115.55177 * 55.16251 * 14 13 12 16 16 H 1.07998 * 119.99535 * 274.62596 * 15 14 13 17 17 C 1.37878 * 120.00252 * 94.35297 * 15 14 13 18 18 N 1.31512 * 119.99888 * 174.99977 * 17 15 14 19 19 Si 1.86801 * 119.99886 * 355.00083 * 17 15 14 20 20 H 1.48490 * 109.47357 * 94.88115 * 19 17 15 21 21 H 1.48503 * 109.46962 * 214.88710 * 19 17 15 22 22 H 1.48503 * 109.47125 * 334.88116 * 19 17 15 23 23 C 1.52999 * 117.49771 * 200.82782 * 14 13 12 24 24 C 1.52994 * 117.50070 * 269.48626 * 14 13 12 25 25 H 1.09003 * 109.46724 * 274.36872 * 1 2 3 26 26 H 1.08994 * 109.46607 * 34.36729 * 1 2 3 27 27 H 1.08998 * 109.46575 * 154.37441 * 1 2 3 28 28 H 1.09003 * 109.47078 * 30.00063 * 3 2 1 29 29 H 1.08997 * 109.47516 * 149.99567 * 3 2 1 30 30 H 1.07995 * 126.28444 * 359.97438 * 5 4 3 31 31 H 1.07994 * 126.28708 * 180.02562 * 6 5 4 32 32 H 1.07997 * 125.89435 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47012 * 270.19721 * 9 8 7 34 34 H 1.09006 * 109.46739 * 30.19318 * 9 8 7 35 35 H 1.09000 * 109.46979 * 150.19032 * 9 8 7 36 36 H 0.96996 * 119.99972 * 5.04036 * 12 10 2 37 37 H 1.08997 * 109.47103 * 65.01070 * 13 12 10 38 38 H 1.09002 * 109.46787 * 305.01155 * 13 12 10 39 39 H 0.97000 * 119.99784 * 179.97438 * 18 17 15 40 40 H 1.09000 * 117.50518 * 215.00494 * 23 14 13 41 41 H 1.09004 * 117.49603 * 0.02562 * 23 14 13 42 42 H 1.09007 * 117.49554 * 359.97438 * 24 14 13 43 43 H 1.09000 * 117.50269 * 144.97511 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 1.6831 2.5542 -2.1343 6 6 2.2723 2.6852 -3.4074 7 6 3.3752 1.9093 -3.4236 8 7 3.4917 1.3087 -2.2051 9 6 4.5593 0.3883 -1.8057 10 6 2.1389 -1.1672 0.0005 11 8 3.3505 -1.1697 0.1025 12 7 1.4698 -2.3317 -0.1120 13 6 2.1888 -3.6034 -0.0009 14 6 1.2281 -4.7590 -0.2881 15 6 0.5039 -4.6897 -1.6078 16 1 -0.4129 -4.1250 -1.6916 17 6 1.0147 -5.3424 -2.7097 18 7 0.3343 -5.3645 -3.8349 19 14 2.6732 -6.1955 -2.6042 20 1 2.4718 -7.6317 -2.2855 21 1 3.3774 -6.0711 -3.9057 22 1 3.4890 -5.5614 -1.5375 23 6 1.6137 -6.1445 0.2341 24 6 0.4767 -5.3647 0.8991 25 1 -0.3633 0.0783 1.0247 26 1 -0.3632 0.8483 -0.5801 27 1 -0.3632 -0.9266 -0.4445 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1384 0.5139 30 1 0.7833 3.0441 -1.7928 31 1 1.9077 3.2949 -4.2208 32 1 4.0517 1.7878 -4.2566 33 1 4.2675 -0.6335 -2.0478 34 1 5.4754 0.6409 -2.3398 35 1 4.7294 0.4731 -0.7324 36 1 0.5122 -2.3279 -0.2666 37 1 2.5906 -3.7067 1.0070 38 1 3.0062 -3.6227 -0.7217 39 1 0.6938 -5.8234 -4.6101 40 1 1.3436 -7.0058 -0.3768 41 1 2.5516 -6.2325 0.7826 42 1 0.6671 -4.9400 1.8848 43 1 -0.5416 -5.7125 0.7257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331472547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:33 Heat of formation + Delta-G solvation = 60.326655 kcal Electronic energy + Delta-G solvation = -24055.805132 eV Core-core repulsion = 20717.557883 eV Total energy + Delta-G solvation = -3338.247249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.09525 -39.57717 -37.22076 -35.26886 -33.57140 -32.53909 -32.14222 -30.27256 -26.89227 -26.73913 -26.06020 -25.49001 -24.16358 -21.78194 -20.41510 -19.73996 -19.45003 -18.82317 -17.59904 -16.82107 -16.45845 -15.96622 -15.32333 -15.04447 -14.67848 -14.24759 -14.03536 -13.72796 -13.34521 -13.11133 -13.01506 -12.75415 -12.60257 -12.46408 -12.31193 -12.11668 -11.95330 -11.92648 -11.76400 -11.40373 -11.19548 -10.83960 -10.49199 -10.17412 -9.79922 -9.61563 -9.17361 -8.71701 -8.64554 -8.57978 -8.36875 -8.12365 -7.86819 -6.18424 -4.22297 2.28528 3.02658 3.20993 3.25174 3.36366 3.37873 3.42705 3.64473 4.37302 4.38114 4.88862 4.96713 5.06855 5.11515 5.17261 5.28555 5.34062 5.44601 5.58950 5.66580 5.70635 5.75884 5.84701 5.85414 5.98723 6.01093 6.04799 6.23008 6.38405 6.40183 6.43770 6.48289 6.65148 6.69767 6.95992 7.06664 7.17488 7.19728 7.31994 7.46128 7.57807 7.66017 8.37559 8.47044 8.80796 9.04904 9.44949 10.92924 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.005043 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.936349 B = 5550.949449 C = 6086.715352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.633 5.633 3 C 0.203 3.797 4 C -0.003 4.003 5 C -0.192 4.192 6 C -0.206 4.206 7 C -0.015 4.015 8 N -0.432 5.432 9 C 0.078 3.922 10 C 0.703 3.297 11 O -0.606 6.606 12 N -0.716 5.716 13 C 0.176 3.824 14 C -0.016 4.016 15 C -0.489 4.489 16 H 0.077 0.923 17 C 0.080 3.920 18 N -0.894 5.894 19 Si 0.881 3.119 20 H -0.280 1.280 21 H -0.295 1.295 22 H -0.257 1.257 23 C -0.193 4.193 24 C -0.180 4.180 25 H 0.053 0.947 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.157 0.843 33 H 0.078 0.922 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.401 0.599 37 H 0.039 0.961 38 H 0.060 0.940 39 H 0.265 0.735 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 12.910 6.746 14.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.370 5.370 3 C 0.078 3.922 4 C -0.116 4.116 5 C -0.218 4.218 6 C -0.231 4.231 7 C -0.146 4.146 8 N -0.106 5.106 9 C -0.063 4.063 10 C 0.405 3.595 11 O -0.486 6.486 12 N -0.371 5.371 13 C 0.051 3.949 14 C -0.017 4.017 15 C -0.527 4.527 16 H 0.095 0.905 17 C -0.123 4.123 18 N -0.530 5.530 19 Si 0.709 3.291 20 H -0.206 1.206 21 H -0.222 1.222 22 H -0.181 1.181 23 C -0.231 4.231 24 C -0.217 4.217 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.091 0.909 28 H 0.113 0.887 29 H 0.106 0.894 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.174 0.826 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.238 0.762 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.225 12.541 6.769 14.864 hybrid contribution 0.322 -0.656 -0.481 0.875 sum 4.548 11.885 6.288 14.194 Atomic orbital electron populations 1.21704 0.79743 1.03424 1.01287 1.47027 1.06354 1.04531 1.79114 1.19580 0.98015 0.84464 0.90095 1.20795 0.92131 1.02893 0.95823 1.20613 1.01643 1.04487 0.95026 1.20786 0.98274 1.05579 0.98469 1.21801 1.02296 1.01492 0.89050 1.43995 1.20550 1.35018 1.11030 1.22124 0.88076 0.93410 1.02709 1.15934 0.85242 0.80500 0.77844 1.90789 1.11998 1.86481 1.59358 1.45158 1.12294 1.04129 1.75505 1.20913 0.94165 0.81325 0.98468 1.19630 0.97375 0.89565 0.95123 1.20121 1.09214 1.33114 0.90214 0.90510 1.24979 0.96975 0.95308 0.95061 1.69892 1.37935 1.42953 1.02251 0.86831 0.84912 0.79989 0.77331 1.20597 1.22239 1.18125 1.22897 0.98361 0.97040 1.04766 1.22910 0.96694 1.05852 0.96258 0.92823 0.91104 0.90901 0.88739 0.89443 0.85136 0.85094 0.82583 0.90368 0.91213 0.88860 0.76165 0.94243 0.92130 0.92506 0.89185 0.90655 0.90921 0.89399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.46 59.85 0.63 1.60 16 2 N -0.63 -9.31 2.86 -188.74 -0.54 -9.85 16 3 C 0.20 2.63 5.63 -5.20 -0.03 2.60 16 4 C 0.00 -0.04 6.47 -81.79 -0.53 -0.57 16 5 C -0.19 -2.65 10.77 -39.78 -0.43 -3.08 16 6 C -0.21 -2.86 10.86 -39.78 -0.43 -3.29 16 7 C -0.01 -0.21 11.44 -16.75 -0.19 -0.40 16 8 N -0.43 -6.51 3.15 -119.89 -0.38 -6.89 16 9 C 0.08 1.12 9.49 59.85 0.57 1.69 16 10 C 0.70 12.88 8.26 -86.92 -0.72 12.16 16 11 O -0.61 -12.18 12.43 5.29 0.07 -12.12 16 12 N -0.72 -13.65 5.24 -65.22 -0.34 -13.99 16 13 C 0.18 3.66 5.43 -4.04 -0.02 3.64 16 14 C -0.02 -0.34 0.97 -155.66 -0.15 -0.49 16 15 C -0.49 -12.79 8.86 -34.44 -0.31 -13.10 16 16 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 17 C 0.08 2.22 5.46 -17.82 -0.10 2.12 16 18 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 19 Si 0.88 21.50 24.73 -169.99 -4.20 17.30 16 20 H -0.28 -6.66 7.09 56.52 0.40 -6.26 16 21 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.26 -6.02 5.80 56.52 0.33 -5.69 16 23 C -0.19 -3.95 7.35 -26.70 -0.20 -4.14 16 24 C -0.18 -3.43 9.93 -26.70 -0.27 -3.70 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 27 H 0.07 0.95 5.91 -51.93 -0.31 0.64 16 28 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 29 H 0.09 1.19 6.42 -51.93 -0.33 0.86 16 30 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.13 1.55 8.06 -52.49 -0.42 1.12 16 32 H 0.16 1.81 8.06 -52.49 -0.42 1.39 16 33 H 0.08 1.35 7.44 -51.93 -0.39 0.96 16 34 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.36 6.04 -51.93 -0.31 1.05 16 36 H 0.40 7.33 5.71 -40.82 -0.23 7.10 16 37 H 0.04 0.78 8.09 -51.93 -0.42 0.36 16 38 H 0.06 1.40 7.07 -51.93 -0.37 1.04 16 39 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.09 1.95 6.69 -51.93 -0.35 1.60 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 344.54 15.07 5.19 5.19 Total: -1.00 -31.34 344.54 -8.17 -39.51 By element: Atomic # 1 Polarization: 18.08 SS G_CDS: -6.56 Total: 11.52 kcal Atomic # 6 Polarization: -2.78 SS G_CDS: -2.17 Total: -4.95 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.48 Total: -56.44 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.20 Total: 17.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.34 -8.17 -39.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331472547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.835 kcal (2) G-P(sol) polarization free energy of solvation -31.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds