Wall clock time and date at job start Tue Mar 31 2020 07:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46494 * 120.00046 * 2 1 4 4 C 1.50695 * 109.47147 * 270.00094 * 3 2 1 5 5 C 1.34857 * 125.89501 * 95.02456 * 4 3 2 6 6 C 1.40892 * 107.41651 * 180.02562 * 5 4 3 7 7 C 1.34852 * 107.42036 * 0.02562 * 6 5 4 8 8 N 1.36347 * 108.21657 * 359.73634 * 7 6 5 9 9 C 1.46503 * 125.63804 * 180.26612 * 8 7 6 10 10 C 1.34771 * 119.99824 * 179.97438 * 2 1 3 11 11 O 1.21587 * 120.00134 * 185.55558 * 10 2 1 12 12 N 1.34779 * 120.00213 * 5.55608 * 10 2 1 13 13 C 1.46504 * 120.00013 * 185.02953 * 12 10 2 14 14 C 1.52998 * 109.46790 * 185.01241 * 13 12 10 15 15 C 1.50702 * 115.55177 * 55.16251 * 14 13 12 16 16 H 1.07998 * 119.99535 * 274.62596 * 15 14 13 17 17 C 1.37878 * 120.00252 * 94.35297 * 15 14 13 18 18 N 1.31512 * 119.99888 * 174.99977 * 17 15 14 19 19 Si 1.86801 * 119.99886 * 355.00083 * 17 15 14 20 20 H 1.48490 * 109.47357 * 94.88115 * 19 17 15 21 21 H 1.48503 * 109.46962 * 214.88710 * 19 17 15 22 22 H 1.48503 * 109.47125 * 334.88116 * 19 17 15 23 23 C 1.52999 * 117.49771 * 200.82782 * 14 13 12 24 24 C 1.52994 * 117.50070 * 269.48626 * 14 13 12 25 25 H 1.09003 * 109.46724 * 274.36872 * 1 2 3 26 26 H 1.08994 * 109.46607 * 34.36729 * 1 2 3 27 27 H 1.08998 * 109.46575 * 154.37441 * 1 2 3 28 28 H 1.09003 * 109.47078 * 30.00063 * 3 2 1 29 29 H 1.08997 * 109.47516 * 149.99567 * 3 2 1 30 30 H 1.07995 * 126.28444 * 359.97438 * 5 4 3 31 31 H 1.07994 * 126.28708 * 180.02562 * 6 5 4 32 32 H 1.07997 * 125.89435 * 179.97438 * 7 6 5 33 33 H 1.08994 * 109.47012 * 270.19721 * 9 8 7 34 34 H 1.09006 * 109.46739 * 30.19318 * 9 8 7 35 35 H 1.09000 * 109.46979 * 150.19032 * 9 8 7 36 36 H 0.96996 * 119.99972 * 5.04036 * 12 10 2 37 37 H 1.08997 * 109.47103 * 65.01070 * 13 12 10 38 38 H 1.09002 * 109.46787 * 305.01155 * 13 12 10 39 39 H 0.97000 * 119.99784 * 179.97438 * 18 17 15 40 40 H 1.09000 * 117.50518 * 215.00494 * 23 14 13 41 41 H 1.09004 * 117.49603 * 0.02562 * 23 14 13 42 42 H 1.09007 * 117.49554 * 359.97438 * 24 14 13 43 43 H 1.09000 * 117.50269 * 144.97511 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 6 1.6831 2.5542 -2.1343 6 6 2.2723 2.6852 -3.4074 7 6 3.3752 1.9093 -3.4236 8 7 3.4917 1.3087 -2.2051 9 6 4.5593 0.3883 -1.8057 10 6 2.1389 -1.1672 0.0005 11 8 3.3505 -1.1697 0.1025 12 7 1.4698 -2.3317 -0.1120 13 6 2.1888 -3.6034 -0.0009 14 6 1.2281 -4.7590 -0.2881 15 6 0.5039 -4.6897 -1.6078 16 1 -0.4129 -4.1250 -1.6916 17 6 1.0147 -5.3424 -2.7097 18 7 0.3343 -5.3645 -3.8349 19 14 2.6732 -6.1955 -2.6042 20 1 2.4718 -7.6317 -2.2855 21 1 3.3774 -6.0711 -3.9057 22 1 3.4890 -5.5614 -1.5375 23 6 1.6137 -6.1445 0.2341 24 6 0.4767 -5.3647 0.8991 25 1 -0.3633 0.0783 1.0247 26 1 -0.3632 0.8483 -0.5801 27 1 -0.3632 -0.9266 -0.4445 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1384 0.5139 30 1 0.7833 3.0441 -1.7928 31 1 1.9077 3.2949 -4.2208 32 1 4.0517 1.7878 -4.2566 33 1 4.2675 -0.6335 -2.0478 34 1 5.4754 0.6409 -2.3398 35 1 4.7294 0.4731 -0.7324 36 1 0.5122 -2.3279 -0.2666 37 1 2.5906 -3.7067 1.0070 38 1 3.0062 -3.6227 -0.7217 39 1 0.6938 -5.8234 -4.6101 40 1 1.3436 -7.0058 -0.3768 41 1 2.5516 -6.2325 0.7826 42 1 0.6671 -4.9400 1.8848 43 1 -0.5416 -5.7125 0.7257 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331472547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:33 Heat of formation + Delta-G solvation = 41.269958 kcal Electronic energy + Delta-G solvation = -24056.631492 eV Core-core repulsion = 20717.557883 eV Total energy + Delta-G solvation = -3339.073610 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.18323 -40.93602 -38.86246 -36.52128 -35.06601 -34.21973 -33.63947 -31.37949 -28.44064 -27.84331 -27.32484 -27.15987 -25.45885 -23.38262 -21.48208 -21.20640 -21.00236 -20.05502 -19.01539 -18.21902 -17.87824 -17.37712 -16.86456 -16.67108 -15.92105 -15.71313 -15.29440 -15.03929 -14.86766 -14.72950 -14.31785 -14.15950 -14.02804 -13.73037 -13.53677 -13.31747 -13.14662 -13.09649 -13.00274 -12.85673 -12.65767 -12.43402 -12.17122 -11.97043 -11.61143 -11.18071 -10.94412 -10.67186 -10.38585 -10.00728 -9.47712 -9.46236 -8.96030 -8.32158 -6.37108 1.16790 1.29937 1.36733 1.47667 1.87256 2.11593 2.22793 2.28319 2.33875 3.01957 3.03434 3.36431 3.93199 4.02635 4.03787 4.14371 4.28316 4.33562 4.36262 4.37456 4.39837 4.55957 4.59161 4.72302 4.75211 4.77178 4.82755 4.84701 4.86357 4.92623 5.09800 5.28361 5.37888 5.42038 5.48918 5.55991 5.66859 5.71739 5.97562 6.17873 6.26053 6.38967 6.50068 6.70178 7.07839 7.32657 7.64145 8.82605 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.017132 B = 0.005043 C = 0.004599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.936349 B = 5550.949449 C = 6086.715352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.628 5.628 3 C 0.203 3.797 4 C -0.022 4.022 5 C -0.195 4.195 6 C -0.218 4.218 7 C -0.031 4.031 8 N -0.446 5.446 9 C 0.088 3.912 10 C 0.696 3.304 11 O -0.628 6.628 12 N -0.721 5.721 13 C 0.187 3.813 14 C -0.041 4.041 15 C -0.475 4.475 16 H 0.044 0.956 17 C 0.024 3.976 18 N -0.944 5.944 19 Si 0.931 3.069 20 H -0.267 1.267 21 H -0.307 1.307 22 H -0.241 1.241 23 C -0.193 4.193 24 C -0.152 4.152 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.056 0.944 28 H 0.132 0.868 29 H 0.077 0.923 30 H 0.153 0.847 31 H 0.149 0.851 32 H 0.175 0.825 33 H 0.043 0.957 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.403 0.597 37 H 0.057 0.943 38 H 0.031 0.969 39 H 0.263 0.737 40 H 0.076 0.924 41 H 0.101 0.899 42 H 0.105 0.895 43 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.319 13.871 8.678 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.364 5.364 3 C 0.080 3.920 4 C -0.135 4.135 5 C -0.220 4.220 6 C -0.243 4.243 7 C -0.162 4.162 8 N -0.121 5.121 9 C -0.054 4.054 10 C 0.397 3.603 11 O -0.510 6.510 12 N -0.376 5.376 13 C 0.062 3.938 14 C -0.042 4.042 15 C -0.513 4.513 16 H 0.062 0.938 17 C -0.174 4.174 18 N -0.584 5.584 19 Si 0.758 3.242 20 H -0.193 1.193 21 H -0.235 1.235 22 H -0.164 1.164 23 C -0.231 4.231 24 C -0.189 4.189 25 H 0.099 0.901 26 H 0.107 0.893 27 H 0.074 0.926 28 H 0.150 0.850 29 H 0.096 0.904 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.192 0.808 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.107 0.893 36 H 0.241 0.759 37 H 0.075 0.925 38 H 0.049 0.951 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.444 13.531 8.734 16.707 hybrid contribution 0.151 -0.848 -1.082 1.383 sum 4.596 12.683 7.652 15.509 Atomic orbital electron populations 1.21888 0.77928 1.03320 1.03218 1.47122 1.07527 1.03921 1.77863 1.19800 0.98227 0.84350 0.89666 1.21164 0.92331 1.03448 0.96573 1.20972 1.02125 1.04081 0.94860 1.21151 0.98225 1.05698 0.99194 1.22274 1.03040 1.01500 0.89355 1.44191 1.20980 1.35327 1.11630 1.21966 0.89039 0.91609 1.02756 1.16136 0.85123 0.81200 0.77850 1.90771 1.13027 1.86948 1.60284 1.45121 1.12333 1.04085 1.76083 1.20645 0.93052 0.81642 0.98438 1.19490 0.99084 0.91217 0.94416 1.20307 1.07900 1.30886 0.92168 0.93765 1.25724 1.00071 0.96661 0.94895 1.70024 1.39880 1.45280 1.03202 0.86013 0.81357 0.79739 0.77120 1.19278 1.23453 1.16409 1.22971 1.00152 0.95278 1.04674 1.22928 0.96109 1.03544 0.96330 0.90091 0.89333 0.92564 0.85040 0.90422 0.82900 0.83362 0.80803 0.93812 0.88633 0.89335 0.75913 0.92460 0.95084 0.92783 0.90542 0.88106 0.87685 0.89754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.71 10.46 127.77 1.34 3.04 16 2 N -0.63 -17.53 2.86 -869.32 -2.48 -20.01 16 3 C 0.20 4.89 5.63 85.63 0.48 5.37 16 4 C -0.02 -0.61 6.47 41.08 0.27 -0.34 16 5 C -0.19 -4.98 10.77 22.14 0.24 -4.74 16 6 C -0.22 -5.70 10.86 22.14 0.24 -5.46 16 7 C -0.03 -0.84 11.44 83.21 0.95 0.11 16 8 N -0.45 -13.21 3.15 -533.24 -1.68 -14.89 16 9 C 0.09 2.54 9.49 127.77 1.21 3.75 16 10 C 0.70 25.06 8.26 179.06 1.48 26.54 16 11 O -0.63 -25.21 12.43 -3.99 -0.05 -25.26 16 12 N -0.72 -27.09 5.24 -478.53 -2.51 -29.60 16 13 C 0.19 7.60 5.43 86.38 0.47 8.07 16 14 C -0.04 -1.74 0.97 -52.93 -0.05 -1.79 16 15 C -0.47 -25.18 8.86 25.60 0.23 -24.95 16 16 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 17 C 0.02 1.38 5.46 84.66 0.46 1.84 16 18 N -0.94 -57.84 13.96 21.45 0.30 -57.54 16 19 Si 0.93 44.59 24.73 68.60 1.70 46.29 16 20 H -0.27 -12.16 7.09 99.48 0.71 -11.45 16 21 H -0.31 -15.13 7.11 99.48 0.71 -14.43 16 22 H -0.24 -10.80 5.80 99.48 0.58 -10.22 16 23 C -0.19 -7.40 7.35 30.62 0.23 -7.17 16 24 C -0.15 -5.37 9.93 30.61 0.30 -5.06 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.09 1.61 8.10 -2.39 -0.02 1.59 16 27 H 0.06 1.42 5.91 -2.39 -0.01 1.40 16 28 H 0.13 2.15 8.07 -2.39 -0.02 2.13 16 29 H 0.08 2.04 6.42 -2.39 -0.02 2.02 16 30 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 31 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 32 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 33 H 0.04 1.55 7.44 -2.39 -0.02 1.54 16 34 H 0.10 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.09 2.61 6.04 -2.39 -0.01 2.59 16 36 H 0.40 14.64 5.71 -92.71 -0.53 14.12 16 37 H 0.06 2.12 8.09 -2.39 -0.02 2.10 16 38 H 0.03 1.43 7.07 -2.39 -0.02 1.41 16 39 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.08 3.15 6.69 -2.39 -0.02 3.14 16 41 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.10 3.08 8.14 -2.38 -0.02 3.06 16 43 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -69.21 344.54 3.47 -65.74 By element: Atomic # 1 Polarization: 35.72 SS G_CDS: 0.35 Total: 36.06 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 7.84 Total: -0.79 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -6.37 Total: -122.04 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.05 Total: -25.26 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.70 Total: 46.29 kcal Total: -69.21 3.47 -65.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331472547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.012 kcal (2) G-P(sol) polarization free energy of solvation -69.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds