Wall clock time and date at job start Tue Mar 31 2020 06:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47219 * 2 1 4 4 N 1.28441 * 125.19190 * 270.53994 * 3 2 1 5 5 C 1.30880 * 110.94912 * 180.02562 * 4 3 2 6 6 C 1.50692 * 126.06109 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47471 * 94.97580 * 6 5 4 8 8 C 1.53003 * 109.47277 * 214.97723 * 6 5 4 9 9 C 1.39651 * 107.87660 * 0.02562 * 5 4 3 10 10 C 1.36638 * 125.19192 * 90.57045 * 3 2 1 11 11 C 1.47024 * 126.90036 * 0.23169 * 10 3 2 12 12 O 1.21681 * 119.99621 * 5.73370 * 11 10 3 13 13 N 1.34769 * 120.00399 * 185.72474 * 11 10 3 14 14 C 1.36842 * 120.00243 * 174.94708 * 13 11 10 15 15 H 1.08005 * 119.99767 * 322.19131 * 14 13 11 16 16 C 1.39045 * 120.00093 * 142.18732 * 14 13 11 17 17 N 1.31372 * 119.99944 * 163.94273 * 16 14 13 18 18 Si 1.86795 * 120.00197 * 343.95183 * 16 14 13 19 19 H 1.48497 * 109.47619 * 90.10885 * 18 16 14 20 20 H 1.48498 * 109.47262 * 210.11274 * 18 16 14 21 21 H 1.48505 * 109.46887 * 330.11229 * 18 16 14 22 22 C 1.46505 * 120.00181 * 354.95647 * 13 11 10 23 23 C 1.52990 * 117.50116 * 147.62527 * 22 13 11 24 24 C 1.52997 * 117.49917 * 78.96277 * 22 13 11 25 25 H 1.08996 * 109.47190 * 304.93946 * 1 2 3 26 26 H 1.09006 * 109.46621 * 64.93904 * 1 2 3 27 27 H 1.09001 * 109.47364 * 184.93521 * 1 2 3 28 28 H 1.09006 * 109.47297 * 239.99870 * 2 1 3 29 29 H 1.09004 * 109.47127 * 120.00009 * 2 1 3 30 30 H 1.09003 * 109.47066 * 334.97406 * 6 5 4 31 31 H 1.09003 * 109.47117 * 59.99858 * 7 6 5 32 32 H 1.09001 * 109.47585 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.47022 * 300.00261 * 7 6 5 34 34 H 1.09003 * 109.46814 * 299.99837 * 8 6 5 35 35 H 1.08998 * 109.47261 * 59.99694 * 8 6 5 36 36 H 1.09001 * 109.47372 * 180.02562 * 8 6 5 37 37 H 1.07998 * 127.32081 * 180.02562 * 9 5 4 38 38 H 0.96997 * 119.99844 * 179.97438 * 17 16 14 39 39 H 1.09001 * 115.54754 * 293.29577 * 22 13 11 40 40 H 1.09008 * 117.50300 * 359.97438 * 23 22 13 41 41 H 1.09003 * 117.49791 * 145.02229 * 23 22 13 42 42 H 1.08999 * 117.50005 * 214.98266 * 24 22 13 43 43 H 1.09002 * 117.50192 * 0.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2558 2.0824 -1.0496 5 6 2.6820 3.2772 -0.7276 6 6 3.0596 4.3736 -1.6901 7 6 1.8604 5.2990 -1.9051 8 6 4.2275 5.1774 -1.1148 9 6 2.7248 3.3560 0.6660 10 6 2.2913 2.1200 1.1166 11 6 2.1582 1.6875 2.5155 12 8 1.8693 0.5334 2.7706 13 7 2.3564 2.5693 3.5152 14 6 2.1321 2.1950 4.8122 15 1 1.3032 1.5451 5.0510 16 6 2.9713 2.6514 5.8226 17 7 2.5945 2.5656 7.0782 18 14 4.6343 3.3866 5.3946 19 1 4.4917 4.8512 5.1955 20 1 5.5894 3.1283 6.5020 21 1 5.1439 2.7646 4.1461 22 6 2.8118 3.9287 3.2135 23 6 2.3297 5.0549 4.1298 24 6 1.7680 4.9283 2.7116 25 1 -0.3633 0.5885 0.8424 26 1 -0.3633 0.4353 -0.9310 27 1 -0.3634 -1.0239 0.0884 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3553 3.9346 -2.6430 31 1 1.5648 5.7380 -0.9521 32 1 2.1337 6.0923 -2.6009 33 1 1.0284 4.7263 -2.3149 34 1 3.9319 5.6164 -0.1619 35 1 5.0819 4.5182 -0.9616 36 1 4.5003 5.9707 -1.8107 37 1 3.0300 4.2012 1.2650 38 1 3.1801 2.8836 7.7830 39 1 3.8202 4.0073 2.8071 40 1 1.6733 4.7847 4.9571 41 1 3.0208 5.8748 4.3260 42 1 2.0897 5.6648 1.9753 43 1 0.7423 4.5748 2.6062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331571469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:27 Heat of formation + Delta-G solvation = 85.496698 kcal Electronic energy + Delta-G solvation = -24813.442522 eV Core-core repulsion = 21476.286727 eV Total energy + Delta-G solvation = -3337.155794 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09706 -38.97535 -36.79501 -35.70735 -33.44022 -33.18551 -31.71311 -30.32670 -28.86713 -27.09102 -25.42194 -23.79495 -23.15366 -22.37315 -21.42625 -21.21578 -19.82608 -18.26363 -17.25856 -16.61817 -15.94264 -15.71104 -15.30457 -14.86978 -14.34723 -14.09855 -13.98438 -13.53804 -13.52636 -13.35749 -13.07658 -12.67031 -12.40142 -12.26979 -11.98421 -11.85235 -11.73427 -11.32952 -11.30592 -11.11079 -11.04146 -10.93672 -10.89438 -10.87707 -10.24415 -10.03982 -9.79011 -9.55417 -9.13064 -8.70019 -8.50450 -8.37511 -7.87128 -6.47715 -4.08991 1.96597 2.90133 3.00297 3.07556 3.21901 3.25711 4.01509 4.12538 4.21028 4.28651 4.67184 4.93435 5.00427 5.08815 5.22988 5.26411 5.28581 5.33734 5.43603 5.49605 5.54643 5.61582 5.67183 5.71809 5.81544 5.87385 5.89829 5.97684 6.02727 6.05449 6.15132 6.24540 6.27898 6.28427 6.32377 6.49493 6.52411 6.79389 7.00612 7.28591 7.44909 8.12615 8.36500 8.61096 8.81678 9.19137 9.63014 10.62372 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.007043 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.542557 B = 3974.666530 C = 5138.220506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.115 3.885 3 N -0.265 5.265 4 N -0.296 5.296 5 C 0.020 3.980 6 C -0.005 4.005 7 C -0.140 4.140 8 C -0.143 4.143 9 C -0.214 4.214 10 C -0.002 4.002 11 C 0.528 3.472 12 O -0.567 6.567 13 N -0.414 5.414 14 C -0.314 4.314 15 H 0.108 0.892 16 C 0.072 3.928 17 N -0.860 5.860 18 Si 0.876 3.124 19 H -0.260 1.260 20 H -0.290 1.290 21 H -0.268 1.268 22 C 0.038 3.962 23 C -0.164 4.164 24 C -0.180 4.180 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.172 0.828 38 H 0.276 0.724 39 H 0.108 0.892 40 H 0.118 0.882 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.708 6.201 -13.932 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.005 4.005 3 N -0.052 5.052 4 N -0.127 5.127 5 C -0.138 4.138 6 C -0.025 4.025 7 C -0.198 4.198 8 C -0.201 4.201 9 C -0.242 4.242 10 C -0.131 4.131 11 C 0.317 3.683 12 O -0.450 6.450 13 N -0.133 5.133 14 C -0.441 4.441 15 H 0.126 0.874 16 C -0.135 4.135 17 N -0.496 5.496 18 Si 0.702 3.298 19 H -0.185 1.185 20 H -0.216 1.216 21 H -0.192 1.192 22 C -0.067 4.067 23 C -0.201 4.201 24 C -0.219 4.219 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.107 0.893 29 H 0.138 0.862 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.189 0.811 38 H 0.086 0.914 39 H 0.125 0.875 40 H 0.136 0.864 41 H 0.113 0.887 42 H 0.114 0.886 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.280 4.776 -14.461 15.232 hybrid contribution 1.094 0.770 0.653 1.489 sum 1.375 5.546 -13.809 14.944 Atomic orbital electron populations 1.22042 0.94079 1.03080 1.02567 1.22090 0.95791 0.77217 1.05418 1.45620 1.45741 1.12060 1.01803 1.72932 1.19946 1.05612 1.14253 1.21811 1.05031 0.93165 0.93751 1.19304 0.95510 0.91538 0.96136 1.21799 0.97506 0.98688 1.01796 1.21821 0.97554 0.99536 1.01186 1.22914 1.08738 0.98268 0.94314 1.21859 1.07769 0.92970 0.90478 1.16828 0.84076 0.85177 0.82222 1.90630 1.53080 1.17524 1.83777 1.42839 1.58341 1.06116 1.06030 1.19009 1.13769 1.32416 0.78889 0.87403 1.25357 0.97710 0.95839 0.94616 1.69685 1.36744 1.43630 0.99525 0.86933 0.83925 0.80327 0.78580 1.18474 1.21647 1.19231 1.22070 0.96734 0.82434 1.05461 1.23460 1.03543 0.98144 0.95001 1.23457 0.99546 1.01556 0.97295 0.91594 0.92454 0.90555 0.89346 0.86225 0.90447 0.92295 0.92492 0.92746 0.92183 0.92501 0.92338 0.81078 0.91350 0.87455 0.86371 0.88656 0.88639 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 10.24 37.16 0.38 -1.92 16 2 C 0.11 1.85 6.60 -4.04 -0.03 1.83 16 3 N -0.27 -4.97 3.35 -57.14 -0.19 -5.16 16 4 N -0.30 -5.28 11.90 33.63 0.40 -4.88 16 5 C 0.02 0.32 6.13 -82.47 -0.51 -0.18 16 6 C 0.00 -0.06 3.38 -91.78 -0.31 -0.37 16 7 C -0.14 -1.51 9.17 37.16 0.34 -1.17 16 8 C -0.14 -1.53 8.79 37.16 0.33 -1.20 16 9 C -0.21 -3.79 7.68 -38.95 -0.30 -4.09 16 10 C 0.00 -0.05 6.87 -82.06 -0.56 -0.61 16 11 C 0.53 12.69 7.60 -12.70 -0.10 12.59 16 12 O -0.57 -14.93 14.56 5.21 0.08 -14.86 16 13 N -0.41 -9.94 2.53 -109.09 -0.28 -10.22 16 14 C -0.31 -8.57 8.69 -15.02 -0.13 -8.70 16 15 H 0.11 3.31 7.96 -52.48 -0.42 2.89 16 16 C 0.07 1.92 4.52 -17.45 -0.08 1.84 16 17 N -0.86 -23.86 13.95 55.50 0.77 -23.09 16 18 Si 0.88 20.03 24.11 -169.99 -4.10 15.93 16 19 H -0.26 -5.27 5.53 56.52 0.31 -4.96 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.27 -6.29 6.98 56.52 0.39 -5.89 16 22 C 0.04 0.75 1.50 -67.93 -0.10 0.65 16 23 C -0.16 -2.98 7.26 -26.70 -0.19 -3.18 16 24 C -0.18 -2.93 8.12 -26.70 -0.22 -3.14 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.12 2.15 6.16 -51.93 -0.32 1.83 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.63 7.37 -51.93 -0.38 0.25 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.17 2.78 2.76 -52.49 -0.14 2.63 16 38 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.11 2.03 6.18 -51.93 -0.32 1.71 16 40 H 0.12 2.45 7.16 -51.92 -0.37 2.08 16 41 H 0.10 1.53 7.29 -51.93 -0.38 1.15 16 42 H 0.10 1.24 7.57 -51.93 -0.39 0.85 16 43 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 LS Contribution 336.87 15.07 5.08 5.08 Total: -1.00 -30.70 336.87 -6.32 -37.03 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -6.61 Total: 7.84 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -1.48 Total: -7.66 kcal Atomic # 7 Polarization: -44.06 SS G_CDS: 0.71 Total: -43.35 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.08 Total: -14.86 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -4.10 Total: 15.93 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.70 -6.32 -37.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331571469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.522 kcal (2) G-P(sol) polarization free energy of solvation -30.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds