Wall clock time and date at job start Tue Mar 31 2020 06:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47219 * 2 1 4 4 N 1.28441 * 125.19190 * 270.53994 * 3 2 1 5 5 C 1.30880 * 110.94912 * 180.02562 * 4 3 2 6 6 C 1.50692 * 126.06109 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47471 * 94.97580 * 6 5 4 8 8 C 1.53003 * 109.47277 * 214.97723 * 6 5 4 9 9 C 1.39651 * 107.87660 * 0.02562 * 5 4 3 10 10 C 1.36638 * 125.19192 * 90.57045 * 3 2 1 11 11 C 1.47024 * 126.90036 * 0.23169 * 10 3 2 12 12 O 1.21681 * 119.99621 * 5.73370 * 11 10 3 13 13 N 1.34769 * 120.00399 * 185.72474 * 11 10 3 14 14 C 1.36842 * 120.00243 * 174.94708 * 13 11 10 15 15 H 1.08005 * 119.99767 * 322.19131 * 14 13 11 16 16 C 1.39045 * 120.00093 * 142.18732 * 14 13 11 17 17 N 1.31372 * 119.99944 * 163.94273 * 16 14 13 18 18 Si 1.86795 * 120.00197 * 343.95183 * 16 14 13 19 19 H 1.48497 * 109.47619 * 90.10885 * 18 16 14 20 20 H 1.48498 * 109.47262 * 210.11274 * 18 16 14 21 21 H 1.48505 * 109.46887 * 330.11229 * 18 16 14 22 22 C 1.46505 * 120.00181 * 354.95647 * 13 11 10 23 23 C 1.52990 * 117.50116 * 147.62527 * 22 13 11 24 24 C 1.52997 * 117.49917 * 78.96277 * 22 13 11 25 25 H 1.08996 * 109.47190 * 304.93946 * 1 2 3 26 26 H 1.09006 * 109.46621 * 64.93904 * 1 2 3 27 27 H 1.09001 * 109.47364 * 184.93521 * 1 2 3 28 28 H 1.09006 * 109.47297 * 239.99870 * 2 1 3 29 29 H 1.09004 * 109.47127 * 120.00009 * 2 1 3 30 30 H 1.09003 * 109.47066 * 334.97406 * 6 5 4 31 31 H 1.09003 * 109.47117 * 59.99858 * 7 6 5 32 32 H 1.09001 * 109.47585 * 179.97438 * 7 6 5 33 33 H 1.09003 * 109.47022 * 300.00261 * 7 6 5 34 34 H 1.09003 * 109.46814 * 299.99837 * 8 6 5 35 35 H 1.08998 * 109.47261 * 59.99694 * 8 6 5 36 36 H 1.09001 * 109.47372 * 180.02562 * 8 6 5 37 37 H 1.07998 * 127.32081 * 180.02562 * 9 5 4 38 38 H 0.96997 * 119.99844 * 179.97438 * 17 16 14 39 39 H 1.09001 * 115.54754 * 293.29577 * 22 13 11 40 40 H 1.09008 * 117.50300 * 359.97438 * 23 22 13 41 41 H 1.09003 * 117.49791 * 145.02229 * 23 22 13 42 42 H 1.08999 * 117.50005 * 214.98266 * 24 22 13 43 43 H 1.09002 * 117.50192 * 0.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2558 2.0824 -1.0496 5 6 2.6820 3.2772 -0.7276 6 6 3.0596 4.3736 -1.6901 7 6 1.8604 5.2990 -1.9051 8 6 4.2275 5.1774 -1.1148 9 6 2.7248 3.3560 0.6660 10 6 2.2913 2.1200 1.1166 11 6 2.1582 1.6875 2.5155 12 8 1.8693 0.5334 2.7706 13 7 2.3564 2.5693 3.5152 14 6 2.1321 2.1950 4.8122 15 1 1.3032 1.5451 5.0510 16 6 2.9713 2.6514 5.8226 17 7 2.5945 2.5656 7.0782 18 14 4.6343 3.3866 5.3946 19 1 4.4917 4.8512 5.1955 20 1 5.5894 3.1283 6.5020 21 1 5.1439 2.7646 4.1461 22 6 2.8118 3.9287 3.2135 23 6 2.3297 5.0549 4.1298 24 6 1.7680 4.9283 2.7116 25 1 -0.3633 0.5885 0.8424 26 1 -0.3633 0.4353 -0.9310 27 1 -0.3634 -1.0239 0.0884 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.3553 3.9346 -2.6430 31 1 1.5648 5.7380 -0.9521 32 1 2.1337 6.0923 -2.6009 33 1 1.0284 4.7263 -2.3149 34 1 3.9319 5.6164 -0.1619 35 1 5.0819 4.5182 -0.9616 36 1 4.5003 5.9707 -1.8107 37 1 3.0300 4.2012 1.2650 38 1 3.1801 2.8836 7.7830 39 1 3.8202 4.0073 2.8071 40 1 1.6733 4.7847 4.9571 41 1 3.0208 5.8748 4.3260 42 1 2.0897 5.6648 1.9753 43 1 0.7423 4.5748 2.6062 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331571469.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:26 Heat of formation + Delta-G solvation = 65.762233 kcal Electronic energy + Delta-G solvation = -24814.298273 eV Core-core repulsion = 21476.286727 eV Total energy + Delta-G solvation = -3338.011545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.51218 -40.69322 -38.44416 -36.83958 -35.11853 -34.59717 -33.58336 -31.87938 -30.12565 -27.89886 -27.31836 -25.05664 -24.56875 -23.86399 -22.89940 -22.66900 -21.20951 -19.62885 -19.12996 -18.21186 -17.49882 -17.38440 -16.82699 -16.19894 -15.79352 -15.64005 -15.20095 -15.13762 -14.87302 -14.85072 -14.37596 -14.11680 -13.96811 -13.43442 -13.34492 -13.08588 -13.06303 -12.81247 -12.71692 -12.44206 -12.31890 -12.11444 -12.03570 -11.94168 -11.90983 -11.56899 -11.32315 -11.10453 -10.97502 -10.48683 -9.99138 -9.82744 -9.66648 -8.52545 -6.20331 0.40225 1.26178 1.36586 1.44469 1.52525 1.70115 2.21179 2.30673 2.53189 2.73627 3.10595 3.47979 3.59257 3.83612 3.90840 4.00023 4.02048 4.07085 4.20404 4.29824 4.39281 4.42638 4.56645 4.62342 4.67383 4.76270 4.82159 4.85298 4.89797 4.97827 5.04148 5.12232 5.13633 5.16880 5.28953 5.34985 5.49358 5.52622 5.55678 5.70167 5.90572 5.95226 6.47414 6.81737 7.16560 7.23367 7.71984 8.62497 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.007043 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.542557 B = 3974.666530 C = 5138.220506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.109 3.891 3 N -0.271 5.271 4 N -0.299 5.299 5 C 0.024 3.976 6 C -0.005 4.005 7 C -0.137 4.137 8 C -0.143 4.143 9 C -0.195 4.195 10 C -0.038 4.038 11 C 0.521 3.479 12 O -0.609 6.609 13 N -0.424 5.424 14 C -0.331 4.331 15 H 0.048 0.952 16 C 0.035 3.965 17 N -0.904 5.904 18 Si 0.935 3.065 19 H -0.205 1.205 20 H -0.294 1.294 21 H -0.276 1.276 22 C 0.007 3.993 23 C -0.165 4.165 24 C -0.148 4.148 25 H 0.031 0.969 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.118 0.882 29 H 0.093 0.907 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.065 0.935 35 H 0.047 0.953 36 H 0.084 0.916 37 H 0.191 0.809 38 H 0.282 0.718 39 H 0.127 0.873 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.146 0.854 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.508 9.720 -16.940 19.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 N -0.058 5.058 4 N -0.131 5.131 5 C -0.133 4.133 6 C -0.025 4.025 7 C -0.195 4.195 8 C -0.200 4.200 9 C -0.223 4.223 10 C -0.165 4.165 11 C 0.311 3.689 12 O -0.495 6.495 13 N -0.143 5.143 14 C -0.458 4.458 15 H 0.066 0.934 16 C -0.169 4.169 17 N -0.541 5.541 18 Si 0.758 3.242 19 H -0.128 1.128 20 H -0.222 1.222 21 H -0.202 1.202 22 C -0.097 4.097 23 C -0.202 4.202 24 C -0.185 4.185 25 H 0.051 0.949 26 H 0.089 0.911 27 H 0.119 0.881 28 H 0.136 0.864 29 H 0.112 0.888 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.060 0.940 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.208 0.792 38 H 0.092 0.908 39 H 0.144 0.856 40 H 0.101 0.899 41 H 0.148 0.852 42 H 0.163 0.837 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.059 8.329 -17.473 19.466 hybrid contribution 0.436 -0.415 1.504 1.620 sum 2.494 7.914 -15.969 17.996 Atomic orbital electron populations 1.21972 0.92917 1.04152 1.01657 1.22213 0.96768 0.76607 1.05496 1.45844 1.45857 1.12667 1.01465 1.72965 1.19926 1.06390 1.13802 1.22542 1.03389 0.93422 0.93983 1.19526 0.96943 0.90714 0.95342 1.21789 0.96285 0.98841 1.02559 1.21848 0.96241 0.99804 1.02147 1.23158 1.06759 0.97340 0.95084 1.21510 1.11024 0.94915 0.89088 1.17428 0.82709 0.84801 0.83953 1.90587 1.54573 1.19421 1.84909 1.42844 1.58571 1.08266 1.04605 1.18538 1.13075 1.32947 0.81287 0.93446 1.26040 1.01004 0.95988 0.93891 1.69788 1.38359 1.45206 1.00744 0.86039 0.78066 0.82672 0.77437 1.12752 1.22172 1.20160 1.22370 0.98579 0.80474 1.08239 1.23481 1.03814 0.98044 0.94872 1.23535 0.97777 1.00012 0.97193 0.94944 0.91087 0.88107 0.86433 0.88843 0.89958 0.92135 0.89759 0.94013 0.91596 0.93389 0.89685 0.79204 0.90811 0.85580 0.89862 0.85154 0.83656 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 10.24 71.98 0.74 -3.61 16 2 C 0.11 3.56 6.60 86.38 0.57 4.13 16 3 N -0.27 -10.07 3.35 -334.69 -1.12 -11.20 16 4 N -0.30 -10.12 11.90 -47.51 -0.57 -10.69 16 5 C 0.02 0.71 6.13 43.04 0.26 0.98 16 6 C -0.01 -0.10 3.38 -11.54 -0.04 -0.14 16 7 C -0.14 -2.34 9.17 71.98 0.66 -1.68 16 8 C -0.14 -2.32 8.79 71.98 0.63 -1.68 16 9 C -0.20 -6.41 7.68 22.68 0.17 -6.24 16 10 C -0.04 -1.54 6.87 40.77 0.28 -1.26 16 11 C 0.52 26.16 7.60 86.55 0.66 26.82 16 12 O -0.61 -34.58 14.56 -4.29 -0.06 -34.64 16 13 N -0.42 -20.98 2.53 -617.27 -1.56 -22.54 16 14 C -0.33 -19.26 8.69 84.11 0.73 -18.53 16 15 H 0.05 3.24 7.96 -2.91 -0.02 3.22 16 16 C 0.03 1.91 4.52 84.96 0.38 2.30 16 17 N -0.90 -52.36 13.95 21.68 0.30 -52.06 16 18 Si 0.94 40.65 24.11 68.60 1.65 42.30 16 19 H -0.21 -7.13 5.53 99.48 0.55 -6.58 16 20 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.28 -12.36 6.98 99.48 0.69 -11.66 16 22 C 0.01 0.26 1.50 44.99 0.07 0.33 16 23 C -0.17 -5.54 7.26 30.61 0.22 -5.31 16 24 C -0.15 -4.30 8.12 30.62 0.25 -4.05 16 25 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 27 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 28 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 29 H 0.09 3.57 6.16 -2.38 -0.01 3.55 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.00 7.37 -2.39 -0.02 0.98 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.19 5.35 2.76 -2.91 -0.01 5.34 16 38 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 39 H 0.13 4.27 6.18 -2.39 -0.01 4.26 16 40 H 0.08 3.44 7.16 -2.38 -0.02 3.43 16 41 H 0.13 3.46 7.29 -2.39 -0.02 3.44 16 42 H 0.15 2.84 7.57 -2.39 -0.02 2.82 16 43 H 0.08 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -73.90 336.87 5.07 -68.83 By element: Atomic # 1 Polarization: 27.12 SS G_CDS: 0.84 Total: 27.95 kcal Atomic # 6 Polarization: -13.54 SS G_CDS: 5.59 Total: -7.95 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -2.94 Total: -96.48 kcal Atomic # 8 Polarization: -34.58 SS G_CDS: -0.06 Total: -34.64 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.65 Total: 42.30 kcal Total: -73.90 5.07 -68.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331571469.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.589 kcal (2) G-P(sol) polarization free energy of solvation -73.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds