Wall clock time and date at job start Tue Mar 31 2020 07:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36340 * 125.63694 * 2 1 4 4 C 1.34847 * 108.21949 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41974 * 359.76811 * 4 3 2 6 6 C 1.34858 * 107.41205 * 0.37824 * 5 4 3 7 7 C 1.50694 * 125.88934 * 179.88223 * 6 5 4 8 8 N 1.46501 * 109.46984 * 94.69270 * 7 6 5 9 9 C 1.34781 * 120.00112 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99782 * 4.97935 * 9 8 7 11 11 N 1.34777 * 120.00020 * 184.98394 * 9 8 7 12 12 C 1.46920 * 120.62966 * 354.77097 * 11 9 8 13 13 C 1.53195 * 108.89195 * 233.67449 * 12 11 9 14 14 C 1.53034 * 109.30987 * 305.29089 * 13 12 11 15 15 C 1.50706 * 109.45749 * 181.37051 * 14 13 12 16 16 H 1.07994 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99915 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00182 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99902 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47173 * 89.99916 * 19 17 15 21 21 H 1.48506 * 109.47056 * 210.00083 * 19 17 15 22 22 H 1.48495 * 109.46912 * 329.99741 * 19 17 15 23 23 C 1.53041 * 109.53698 * 61.37073 * 14 13 12 24 24 C 1.47201 * 120.81180 * 174.90792 * 11 9 8 25 25 H 1.09004 * 109.47184 * 269.97957 * 1 2 3 26 26 H 1.09004 * 109.47047 * 29.97565 * 1 2 3 27 27 H 1.08997 * 109.47595 * 149.97353 * 1 2 3 28 28 H 1.07999 * 125.89306 * 359.97438 * 3 2 1 29 29 H 1.08003 * 126.29519 * 179.97438 * 4 3 2 30 30 H 1.07991 * 126.29598 * 180.24077 * 5 4 3 31 31 H 1.09007 * 109.47217 * 334.69731 * 7 6 5 32 32 H 1.09002 * 109.47485 * 214.69480 * 7 6 5 33 33 H 0.96996 * 119.99935 * 0.02562 * 8 7 6 34 34 H 1.09008 * 109.58722 * 113.81679 * 12 11 9 35 35 H 1.09004 * 109.59155 * 353.53081 * 12 11 9 36 36 H 1.08998 * 109.49738 * 65.25124 * 13 12 11 37 37 H 1.09008 * 109.49517 * 185.31058 * 13 12 11 38 38 H 1.08993 * 109.46741 * 301.34251 * 14 13 12 39 39 H 0.96997 * 120.00090 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.50104 * 58.58324 * 23 14 13 41 41 H 1.09006 * 109.49750 * 178.68212 * 23 14 13 42 42 H 1.09000 * 109.53945 * 6.53553 * 24 11 9 43 43 H 1.09004 * 109.67937 * 246.23280 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7044 -0.0006 5 6 3.5460 -0.7045 0.0045 6 6 2.2593 -1.1081 -0.0005 7 6 1.7818 -2.5374 -0.0003 8 7 1.5138 -2.9625 1.3759 9 6 1.0742 -4.2127 1.6215 10 8 0.9863 -5.0157 0.7129 11 7 0.7319 -4.5726 2.8744 12 6 0.9397 -3.6524 4.0008 13 6 1.7525 -4.3692 5.0835 14 6 1.0494 -5.6743 5.4634 15 6 1.8287 -6.3658 6.5524 16 1 2.7342 -5.9190 6.9353 17 6 1.3855 -7.5688 7.0597 18 7 0.2829 -8.1131 6.5929 19 14 2.3510 -8.4255 8.4099 20 1 1.8601 -7.9695 9.7351 21 1 2.1683 -9.8947 8.2932 22 1 3.7920 -8.0936 8.2748 23 6 0.9672 -6.5869 4.2376 24 6 0.1454 -5.8953 3.1453 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.9172 2.1324 -0.0004 29 1 4.4165 1.3436 -0.0011 30 1 4.4164 -1.3437 0.0091 31 1 2.5498 -3.1772 -0.4351 32 1 0.8678 -2.6153 -0.5891 33 1 1.6527 -2.3442 2.1102 34 1 -0.0251 -3.3500 4.4083 35 1 1.4837 -2.7722 3.6581 36 1 2.7498 -4.5904 4.7031 37 1 1.8321 -3.7291 5.9622 38 1 0.0434 -5.4543 5.8205 39 1 -0.0291 -8.9592 6.9501 40 1 1.9718 -6.7874 3.8652 41 1 0.4873 -7.5257 4.5145 42 1 0.1664 -6.4965 2.2363 43 1 -0.8847 -5.7781 3.4820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335980906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:45 Heat of formation + Delta-G solvation = 22.893810 kcal Electronic energy + Delta-G solvation = -23350.226854 eV Core-core repulsion = 20010.356395 eV Total energy + Delta-G solvation = -3339.870459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.45176 -39.82960 -36.95812 -34.69593 -33.49520 -33.06297 -31.16561 -30.47484 -29.42478 -26.59245 -26.33617 -25.12646 -22.97862 -22.14409 -20.77618 -20.19948 -19.67115 -18.81518 -17.82324 -16.84150 -16.35512 -15.97838 -15.32136 -15.26919 -14.58691 -14.31424 -14.10955 -13.77195 -13.50176 -13.17571 -13.14433 -12.74001 -12.63576 -12.57342 -12.51340 -12.25508 -12.14296 -11.82304 -11.76290 -11.10778 -10.93199 -10.63742 -10.42489 -10.04832 -9.81709 -9.55186 -9.17609 -8.99131 -8.88295 -8.79033 -8.35573 -8.29477 -7.88564 -6.00724 -4.07380 1.89394 2.71446 2.77630 3.24593 3.29495 3.36815 3.39977 3.55989 4.27745 4.42326 4.51188 4.52816 4.86623 4.88307 5.11120 5.21535 5.29050 5.38114 5.43726 5.55496 5.62626 5.76503 5.86055 6.05593 6.08847 6.17909 6.27459 6.43444 6.49332 6.60507 6.63584 6.81985 6.83056 6.99250 7.02462 7.12905 7.17279 7.25977 7.50307 7.72368 7.94716 8.07653 8.31349 8.41791 8.94249 8.95958 9.57662 11.04640 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.003218 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.970992 B = 8700.317798 C = 9087.342817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.443 5.443 3 C -0.009 4.009 4 C -0.203 4.203 5 C -0.173 4.173 6 C -0.007 4.007 7 C 0.212 3.788 8 N -0.750 5.750 9 C 0.705 3.295 10 O -0.601 6.601 11 N -0.618 5.618 12 C 0.114 3.886 13 C -0.124 4.124 14 C 0.050 3.950 15 C -0.513 4.513 16 H 0.054 0.946 17 C 0.061 3.939 18 N -0.890 5.890 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.123 4.123 24 C 0.127 3.873 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.161 0.839 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.396 0.604 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.027 0.973 39 H 0.260 0.740 40 H 0.038 0.962 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 17.543 -11.942 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.119 5.119 3 C -0.140 4.140 4 C -0.228 4.228 5 C -0.199 4.199 6 C -0.118 4.118 7 C 0.087 3.913 8 N -0.410 5.410 9 C 0.407 3.593 10 O -0.480 6.480 11 N -0.354 5.354 12 C -0.010 4.010 13 C -0.162 4.162 14 C 0.031 3.969 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.140 4.140 18 N -0.529 5.529 19 Si 0.719 3.281 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.162 4.162 24 C 0.005 3.995 25 H 0.092 0.908 26 H 0.101 0.899 27 H 0.103 0.897 28 H 0.179 0.821 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.233 0.767 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.045 0.955 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.122 0.878 42 H 0.094 0.906 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.512 16.765 -12.587 20.971 hybrid contribution 0.594 -0.044 1.197 1.337 sum 0.082 16.721 -11.390 20.232 Atomic orbital electron populations 1.22039 0.77323 1.04307 1.03508 1.43961 1.06139 1.05717 1.56066 1.21838 0.90607 0.91269 1.10301 1.20906 0.95984 0.95057 1.10858 1.20813 0.95238 0.95191 1.08660 1.20323 0.90630 0.88241 1.12628 1.19365 1.00813 0.87690 0.83398 1.45408 1.73359 1.13594 1.08626 1.15850 0.78172 0.81877 0.83411 1.90867 1.61976 1.51093 1.44101 1.47515 1.65125 1.18205 1.04573 1.21695 0.99931 0.91341 0.87990 1.22011 0.98882 0.99403 0.95900 1.18618 0.95870 0.89499 0.92868 1.21191 1.09481 1.05501 1.18983 0.92753 1.24964 0.95014 0.97245 0.96751 1.69844 1.21974 1.18744 1.42356 0.86616 0.80450 0.78774 0.82283 1.20762 1.21244 1.19987 1.22022 0.98257 1.02095 0.93828 1.21817 0.96275 0.81331 1.00087 0.90764 0.89877 0.89724 0.82122 0.84609 0.84471 0.89592 0.91609 0.76738 0.92057 0.92397 0.92846 0.92188 0.95523 0.92960 0.94299 0.87832 0.90567 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.47 10.92 59.84 0.65 1.12 16 2 N -0.44 -4.19 3.15 -119.90 -0.38 -4.57 16 3 C -0.01 -0.08 11.43 -16.75 -0.19 -0.28 16 4 C -0.20 -2.03 10.86 -39.78 -0.43 -2.46 16 5 C -0.17 -1.94 10.77 -39.78 -0.43 -2.37 16 6 C -0.01 -0.08 6.26 -81.79 -0.51 -0.59 16 7 C 0.21 2.61 5.83 -5.20 -0.03 2.58 16 8 N -0.75 -10.51 5.46 -66.41 -0.36 -10.87 16 9 C 0.71 12.78 8.30 -86.91 -0.72 12.06 16 10 O -0.60 -12.88 15.79 5.29 0.08 -12.80 16 11 N -0.62 -11.32 2.98 -178.27 -0.53 -11.85 16 12 C 0.11 1.85 6.38 -3.71 -0.02 1.82 16 13 C -0.12 -2.41 5.30 -26.61 -0.14 -2.55 16 14 C 0.05 1.19 2.07 -91.73 -0.19 1.00 16 15 C -0.51 -13.73 8.56 -34.44 -0.29 -14.02 16 16 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 17 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 18 N -0.89 -24.82 11.30 55.43 0.63 -24.19 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.12 -2.88 5.15 -26.61 -0.14 -3.02 16 24 C 0.13 2.57 6.45 -3.56 -0.02 2.55 16 25 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.08 0.58 7.12 -51.93 -0.37 0.21 16 28 H 0.16 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.14 1.12 8.06 -52.48 -0.42 0.70 16 30 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.07 0.80 7.22 -51.93 -0.37 0.42 16 33 H 0.40 5.03 5.95 -40.82 -0.24 4.79 16 34 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 35 H 0.06 0.78 5.64 -51.93 -0.29 0.48 16 36 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 38 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 40 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 2.69 6.03 -51.93 -0.31 2.37 16 42 H 0.08 1.59 7.01 -51.93 -0.36 1.23 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 345.59 15.07 5.21 5.21 Total: -1.00 -31.27 345.59 -9.51 -40.78 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -6.57 Total: 4.87 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -2.57 Total: -2.58 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: -0.65 Total: -51.49 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.08 Total: -12.80 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.27 -9.51 -40.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335980906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.672 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds