Wall clock time and date at job start Tue Mar 31 2020 07:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36340 * 125.63694 * 2 1 4 4 C 1.34847 * 108.21949 * 180.02562 * 3 2 1 5 5 C 1.40892 * 107.41974 * 359.76811 * 4 3 2 6 6 C 1.34858 * 107.41205 * 0.37824 * 5 4 3 7 7 C 1.50694 * 125.88934 * 179.88223 * 6 5 4 8 8 N 1.46501 * 109.46984 * 94.69270 * 7 6 5 9 9 C 1.34781 * 120.00112 * 180.02562 * 8 7 6 10 10 O 1.21583 * 119.99782 * 4.97935 * 9 8 7 11 11 N 1.34777 * 120.00020 * 184.98394 * 9 8 7 12 12 C 1.46920 * 120.62966 * 354.77097 * 11 9 8 13 13 C 1.53195 * 108.89195 * 233.67449 * 12 11 9 14 14 C 1.53034 * 109.30987 * 305.29089 * 13 12 11 15 15 C 1.50706 * 109.45749 * 181.37051 * 14 13 12 16 16 H 1.07994 * 119.99965 * 0.02562 * 15 14 13 17 17 C 1.37877 * 119.99915 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00182 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99902 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47173 * 89.99916 * 19 17 15 21 21 H 1.48506 * 109.47056 * 210.00083 * 19 17 15 22 22 H 1.48495 * 109.46912 * 329.99741 * 19 17 15 23 23 C 1.53041 * 109.53698 * 61.37073 * 14 13 12 24 24 C 1.47201 * 120.81180 * 174.90792 * 11 9 8 25 25 H 1.09004 * 109.47184 * 269.97957 * 1 2 3 26 26 H 1.09004 * 109.47047 * 29.97565 * 1 2 3 27 27 H 1.08997 * 109.47595 * 149.97353 * 1 2 3 28 28 H 1.07999 * 125.89306 * 359.97438 * 3 2 1 29 29 H 1.08003 * 126.29519 * 179.97438 * 4 3 2 30 30 H 1.07991 * 126.29598 * 180.24077 * 5 4 3 31 31 H 1.09007 * 109.47217 * 334.69731 * 7 6 5 32 32 H 1.09002 * 109.47485 * 214.69480 * 7 6 5 33 33 H 0.96996 * 119.99935 * 0.02562 * 8 7 6 34 34 H 1.09008 * 109.58722 * 113.81679 * 12 11 9 35 35 H 1.09004 * 109.59155 * 353.53081 * 12 11 9 36 36 H 1.08998 * 109.49738 * 65.25124 * 13 12 11 37 37 H 1.09008 * 109.49517 * 185.31058 * 13 12 11 38 38 H 1.08993 * 109.46741 * 301.34251 * 14 13 12 39 39 H 0.96997 * 120.00090 * 180.02562 * 18 17 15 40 40 H 1.08997 * 109.50104 * 58.58324 * 23 14 13 41 41 H 1.09006 * 109.49750 * 178.68212 * 23 14 13 42 42 H 1.09000 * 109.53945 * 6.53553 * 24 11 9 43 43 H 1.09004 * 109.67937 * 246.23280 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2593 1.1081 0.0000 4 6 3.5460 0.7044 -0.0006 5 6 3.5460 -0.7045 0.0045 6 6 2.2593 -1.1081 -0.0005 7 6 1.7818 -2.5374 -0.0003 8 7 1.5138 -2.9625 1.3759 9 6 1.0742 -4.2127 1.6215 10 8 0.9863 -5.0157 0.7129 11 7 0.7319 -4.5726 2.8744 12 6 0.9397 -3.6524 4.0008 13 6 1.7525 -4.3692 5.0835 14 6 1.0494 -5.6743 5.4634 15 6 1.8287 -6.3658 6.5524 16 1 2.7342 -5.9190 6.9353 17 6 1.3855 -7.5688 7.0597 18 7 0.2829 -8.1131 6.5929 19 14 2.3510 -8.4255 8.4099 20 1 1.8601 -7.9695 9.7351 21 1 2.1683 -9.8947 8.2932 22 1 3.7920 -8.0936 8.2748 23 6 0.9672 -6.5869 4.2376 24 6 0.1454 -5.8953 3.1453 25 1 -0.3634 -0.0004 1.0277 26 1 -0.3633 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 1.9172 2.1324 -0.0004 29 1 4.4165 1.3436 -0.0011 30 1 4.4164 -1.3437 0.0091 31 1 2.5498 -3.1772 -0.4351 32 1 0.8678 -2.6153 -0.5891 33 1 1.6527 -2.3442 2.1102 34 1 -0.0251 -3.3500 4.4083 35 1 1.4837 -2.7722 3.6581 36 1 2.7498 -4.5904 4.7031 37 1 1.8321 -3.7291 5.9622 38 1 0.0434 -5.4543 5.8205 39 1 -0.0291 -8.9592 6.9501 40 1 1.9718 -6.7874 3.8652 41 1 0.4873 -7.5257 4.5145 42 1 0.1664 -6.4965 2.2363 43 1 -0.8847 -5.7781 3.4820 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335980906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:44 Heat of formation + Delta-G solvation = 4.909823 kcal Electronic energy + Delta-G solvation = -23351.006698 eV Core-core repulsion = 20010.356395 eV Total energy + Delta-G solvation = -3340.650304 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.21364 -41.25229 -38.56755 -35.96996 -35.32325 -33.70722 -32.94994 -31.94646 -30.60589 -28.03392 -27.18238 -26.29237 -24.64736 -23.79073 -21.77584 -21.49544 -20.74129 -20.08968 -19.13890 -18.33929 -17.74047 -17.23235 -16.62746 -16.53147 -16.12206 -15.35814 -15.23068 -15.20470 -14.90976 -14.57259 -14.28268 -14.25060 -14.05253 -13.63852 -13.43618 -13.29007 -13.11204 -12.98396 -12.88764 -12.82106 -12.69071 -12.46312 -12.16860 -11.94179 -11.44572 -11.38058 -10.94413 -10.79573 -10.40103 -10.26455 -9.50588 -9.40388 -9.06259 -8.06946 -6.20725 1.05198 1.41396 1.43471 1.52382 1.80443 2.07245 2.12665 2.15890 2.44459 3.01122 3.19646 3.67150 4.01544 4.05817 4.14998 4.24243 4.31861 4.38012 4.42814 4.49775 4.58248 4.61431 4.72133 4.74350 4.75129 4.82079 4.89451 4.97747 5.19142 5.22430 5.36724 5.40319 5.42179 5.47115 5.49463 5.66005 5.98182 6.03758 6.06347 6.12755 6.27021 6.39444 6.48726 6.90458 6.96756 7.47323 7.52839 8.96420 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.003218 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.970992 B = 8700.317798 C = 9087.342817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.444 5.444 3 C 0.001 3.999 4 C -0.223 4.223 5 C -0.188 4.188 6 C -0.022 4.022 7 C 0.217 3.783 8 N -0.731 5.731 9 C 0.704 3.296 10 O -0.637 6.637 11 N -0.621 5.621 12 C 0.120 3.880 13 C -0.116 4.116 14 C 0.047 3.953 15 C -0.533 4.533 16 H 0.051 0.949 17 C 0.013 3.987 18 N -0.915 5.915 19 Si 0.950 3.050 20 H -0.274 1.274 21 H -0.286 1.286 22 H -0.272 1.272 23 C -0.112 4.112 24 C 0.139 3.861 25 H 0.080 0.920 26 H 0.108 0.892 27 H 0.080 0.920 28 H 0.194 0.806 29 H 0.149 0.851 30 H 0.134 0.866 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.405 0.595 34 H 0.077 0.923 35 H 0.094 0.906 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.006 0.994 39 H 0.260 0.740 40 H 0.019 0.981 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.128 20.144 -11.948 23.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.119 5.119 3 C -0.131 4.131 4 C -0.247 4.247 5 C -0.215 4.215 6 C -0.134 4.134 7 C 0.093 3.907 8 N -0.390 5.390 9 C 0.405 3.595 10 O -0.519 6.519 11 N -0.357 5.357 12 C -0.003 4.003 13 C -0.155 4.155 14 C 0.028 3.972 15 C -0.571 4.571 16 H 0.070 0.930 17 C -0.185 4.185 18 N -0.554 5.554 19 Si 0.776 3.224 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.196 1.196 23 C -0.151 4.151 24 C 0.016 3.984 25 H 0.098 0.902 26 H 0.127 0.873 27 H 0.098 0.902 28 H 0.211 0.789 29 H 0.167 0.833 30 H 0.152 0.848 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.243 0.757 34 H 0.096 0.904 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.092 0.908 38 H 0.024 0.976 39 H 0.070 0.930 40 H 0.037 0.963 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -0.473 19.417 -12.586 23.145 hybrid contribution 0.600 -0.805 1.177 1.547 sum 0.127 18.612 -11.410 21.832 Atomic orbital electron populations 1.22253 0.75713 1.05450 1.04254 1.44164 1.07180 1.05270 1.55280 1.22380 0.90206 0.92374 1.08093 1.21172 0.97260 0.94619 1.11686 1.21002 0.95366 0.96171 1.08914 1.20061 0.90962 0.87974 1.14388 1.19326 1.00623 0.88570 0.82215 1.45289 1.71820 1.12095 1.09791 1.15968 0.78051 0.82688 0.82748 1.90843 1.63467 1.52488 1.45146 1.47455 1.65147 1.17676 1.05437 1.21761 1.00718 0.91402 0.86378 1.21872 0.98252 0.97738 0.97616 1.18589 0.94853 0.91543 0.92192 1.21589 1.09657 1.06013 1.19886 0.93046 1.25699 0.95931 0.98038 0.98856 1.69972 1.23144 1.18965 1.43345 0.85679 0.79224 0.77562 0.79913 1.19993 1.21210 1.19640 1.21787 0.97200 1.01290 0.94826 1.21479 0.96120 0.82354 0.98419 0.90152 0.87305 0.90158 0.78939 0.83346 0.84799 0.90700 0.91319 0.75668 0.90450 0.88810 0.93886 0.90825 0.97556 0.93044 0.96250 0.90792 0.91435 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 10.92 127.77 1.39 2.06 16 2 N -0.44 -7.19 3.15 -533.26 -1.68 -8.87 16 3 C 0.00 0.01 11.43 83.21 0.95 0.97 16 4 C -0.22 -3.97 10.86 22.14 0.24 -3.73 16 5 C -0.19 -3.99 10.77 22.14 0.24 -3.75 16 6 C -0.02 -0.46 6.26 41.08 0.26 -0.20 16 7 C 0.22 5.12 5.83 85.63 0.50 5.62 16 8 N -0.73 -19.25 5.46 -482.29 -2.63 -21.88 16 9 C 0.70 24.83 8.30 179.05 1.49 26.32 16 10 O -0.64 -27.32 15.79 -3.98 -0.06 -27.38 16 11 N -0.62 -22.12 2.98 -836.18 -2.50 -24.62 16 12 C 0.12 3.61 6.38 86.36 0.55 4.16 16 13 C -0.12 -4.41 5.30 30.67 0.16 -4.25 16 14 C 0.05 2.25 2.07 -11.51 -0.02 2.22 16 15 C -0.53 -28.81 8.56 25.60 0.22 -28.59 16 16 H 0.05 2.74 7.74 -2.91 -0.02 2.71 16 17 C 0.01 0.74 5.30 84.65 0.45 1.18 16 18 N -0.91 -52.02 11.30 21.45 0.24 -51.78 16 19 Si 0.95 43.39 29.54 68.60 2.03 45.41 16 20 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 21 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 C -0.11 -5.39 5.15 30.67 0.16 -5.23 16 24 C 0.14 5.70 6.45 86.31 0.56 6.26 16 25 H 0.08 0.76 8.14 -2.38 -0.02 0.75 16 26 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.08 0.92 7.12 -2.39 -0.02 0.90 16 28 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 29 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.13 2.77 8.06 -2.92 -0.02 2.75 16 31 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 32 H 0.07 1.59 7.22 -2.39 -0.02 1.58 16 33 H 0.41 9.17 5.95 -92.71 -0.55 8.62 16 34 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 35 H 0.09 2.18 5.64 -2.38 -0.01 2.17 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.07 2.58 8.14 -2.38 -0.02 2.56 16 38 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 40 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 4.00 6.03 -2.38 -0.01 3.98 16 42 H 0.07 2.88 7.01 -2.39 -0.02 2.86 16 43 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -68.31 345.59 2.99 -65.32 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.45 Total: 20.73 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: 7.14 Total: 3.06 kcal Atomic # 7 Polarization: -100.58 SS G_CDS: -6.56 Total: -107.14 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.06 Total: -27.38 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -68.31 2.99 -65.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335980906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.229 kcal (2) G-P(sol) polarization free energy of solvation -68.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds