Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.46958 * 2 1 4 4 C 1.46506 * 119.99707 * 274.78405 * 3 2 1 5 5 C 1.50694 * 109.47573 * 270.00091 * 4 3 2 6 6 H 1.07999 * 119.99517 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00552 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99708 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00315 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47256 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47125 * 119.99972 * 9 7 5 12 12 H 1.48503 * 109.46927 * 240.00105 * 9 7 5 13 13 C 1.34777 * 120.00401 * 94.78983 * 3 2 1 14 14 O 1.21286 * 120.00008 * 185.48763 * 13 3 2 15 15 C 1.50695 * 120.00110 * 5.48122 * 13 3 2 16 16 H 1.09007 * 109.71391 * 325.35618 * 15 13 3 17 17 C 1.53383 * 109.75696 * 204.72352 * 15 13 3 18 18 C 1.53034 * 109.71711 * 189.74504 * 17 15 13 19 19 C 1.53372 * 109.75058 * 71.72277 * 18 17 15 20 20 C 1.50955 * 108.20736 * 309.35758 * 19 18 17 21 21 N 1.30124 * 128.28554 * 197.08681 * 20 19 18 22 22 N 1.40309 * 108.12297 * 179.97438 * 21 20 19 23 23 C 1.46497 * 126.00523 * 179.87959 * 22 21 20 24 24 C 1.35195 * 107.99373 * 359.62566 * 22 21 20 25 25 C 1.34582 * 107.61788 * 0.24236 * 24 22 21 26 26 H 1.09002 * 109.47524 * 300.00163 * 1 2 3 27 27 H 1.09003 * 109.47056 * 60.00765 * 1 2 3 28 28 H 1.09000 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47601 * 239.99406 * 2 1 3 30 30 H 1.09003 * 109.47056 * 119.99235 * 2 1 3 31 31 H 1.09000 * 109.47142 * 30.00569 * 4 3 2 32 32 H 1.09000 * 109.46683 * 149.99810 * 4 3 2 33 33 H 0.96993 * 120.00277 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.43153 * 309.81847 * 17 15 13 35 35 H 1.08995 * 109.43011 * 69.67065 * 17 15 13 36 36 H 1.09004 * 109.42374 * 191.80430 * 18 17 15 37 37 H 1.08993 * 109.42444 * 311.63558 * 18 17 15 38 38 H 1.09002 * 109.71735 * 69.02986 * 19 18 17 39 39 H 1.08992 * 109.71398 * 189.67687 * 19 18 17 40 40 H 1.08999 * 109.47162 * 269.69926 * 23 22 21 41 41 H 1.09000 * 109.47256 * 149.70215 * 23 22 21 42 42 H 1.09000 * 109.46823 * 29.69668 * 23 22 21 43 43 H 1.08002 * 126.19758 * 180.26777 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1626 2.1070 -1.2644 5 6 3.5469 1.8840 -1.8165 6 1 4.2489 1.2633 -1.2795 7 6 3.9171 2.4715 -3.0076 8 7 3.0621 3.2270 -3.6618 9 14 5.6328 2.1945 -3.6923 10 1 6.3963 1.3128 -2.7730 11 1 5.5351 1.5522 -5.0276 12 1 6.3312 3.4988 -3.8202 13 6 2.3348 1.9841 1.1631 14 8 2.6435 3.1570 1.1738 15 6 2.3051 1.2011 2.4503 16 1 1.4998 0.4672 2.4157 17 6 2.0863 2.1541 3.6320 18 6 2.2969 1.4017 4.9479 19 6 3.7885 1.1012 5.1401 20 6 4.3060 0.4550 3.8779 21 7 5.4032 -0.2245 3.7114 22 7 5.4658 -0.6305 2.3698 23 6 6.5395 -1.4166 1.7571 24 6 4.3583 -0.1737 1.7431 25 6 3.6259 0.4995 2.6494 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 1.4237 1.7434 -1.9785 32 1 2.0075 3.1720 -1.0916 33 1 3.3225 3.6406 -4.4996 34 1 2.7958 2.9792 3.5686 35 1 1.0703 2.5471 3.5976 36 1 1.9407 2.0139 5.7765 37 1 1.7388 0.4659 4.9236 38 1 4.3295 2.0290 5.3266 39 1 3.9212 0.4219 5.9821 40 1 7.3012 -0.7448 1.3614 41 1 6.1309 -2.0201 0.9466 42 1 6.9852 -2.0696 2.5074 43 1 4.1067 -0.3224 0.7034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337008328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = 31.208880 kcal Electronic energy + Delta-G solvation = -24494.985335 eV Core-core repulsion = 21155.475445 eV Total energy + Delta-G solvation = -3339.509891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40787 -39.03226 -36.34430 -35.18997 -32.92917 -32.47614 -31.64583 -30.05140 -28.52765 -27.42163 -26.69602 -23.97646 -23.04515 -22.32246 -21.58241 -20.69817 -18.72074 -18.01940 -16.81856 -16.37342 -16.27134 -15.48318 -15.27585 -14.71876 -14.63063 -14.29044 -13.90778 -13.52127 -13.31525 -13.15037 -12.78840 -12.73482 -12.58853 -12.42036 -12.06845 -11.92943 -11.72255 -11.45065 -11.20451 -11.07876 -10.92173 -10.84212 -10.71246 -10.63198 -10.45529 -10.19715 -10.13134 -9.62679 -9.06149 -8.88975 -8.45372 -8.01656 -7.61243 -6.06013 -4.10677 2.08416 2.63431 2.89064 3.25687 3.33615 3.35323 3.55072 4.01246 4.41917 4.43806 4.89768 4.96127 5.00415 5.11303 5.20049 5.26844 5.30057 5.34573 5.43694 5.45217 5.54675 5.61678 5.67879 5.69572 5.77838 5.82782 5.91440 6.00393 6.08894 6.15217 6.25485 6.30268 6.36806 6.52195 6.59204 6.82860 7.11663 7.19230 7.48529 7.58944 7.89282 7.91515 8.23189 8.48622 8.89493 9.16765 9.54560 11.02011 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.006173 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.030830 B = 4534.881926 C = 5504.658324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.101 3.899 3 N -0.599 5.599 4 C 0.245 3.755 5 C -0.523 4.523 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.893 5.893 9 Si 0.895 3.105 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.283 1.283 13 C 0.516 3.484 14 O -0.539 6.539 15 C -0.028 4.028 16 H 0.090 0.910 17 C -0.103 4.103 18 C -0.112 4.112 19 C -0.036 4.036 20 C 0.085 3.915 21 N -0.298 5.298 22 N -0.384 5.384 23 C 0.106 3.894 24 C 0.075 3.925 25 C -0.223 4.223 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.582 -10.596 13.458 17.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.023 4.023 3 N -0.331 5.331 4 C 0.126 3.874 5 C -0.562 4.562 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.532 5.532 9 Si 0.723 3.277 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.302 3.698 14 O -0.416 6.416 15 C -0.051 4.051 16 H 0.108 0.892 17 C -0.141 4.141 18 C -0.150 4.150 19 C -0.075 4.075 20 C -0.083 4.083 21 N -0.119 5.119 22 N -0.166 5.166 23 C -0.036 4.036 24 C -0.069 4.069 25 C -0.235 4.235 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.243 -10.412 13.720 17.225 hybrid contribution 0.387 0.039 -1.277 1.335 sum 0.145 -10.373 12.443 16.200 Atomic orbital electron populations 1.22196 0.96698 1.01306 1.02450 1.21488 0.93867 0.84543 1.02400 1.48230 1.63593 1.13231 1.08065 1.19242 0.96542 0.93244 0.78360 1.21435 0.98516 1.30488 1.05786 0.92700 1.24920 0.97311 0.95015 0.96808 1.69936 1.34841 1.32149 1.16267 0.86499 0.84495 0.78070 0.78652 1.20001 1.20950 1.20890 1.20229 0.77385 0.87441 0.84708 1.90640 1.47958 1.16467 1.86537 1.19762 0.94301 0.96765 0.94258 0.89232 1.21438 1.02657 0.98045 0.91983 1.21557 0.94896 1.00770 0.97795 1.20114 0.95842 0.99754 0.91828 1.22246 0.92249 0.97389 0.96418 1.76935 1.20662 1.19388 0.94937 1.48402 1.17776 1.43609 1.06810 1.21803 0.88682 0.94983 0.98129 1.22251 0.87847 0.97638 0.99211 1.19514 1.00702 1.09746 0.93553 0.92942 0.91994 0.92308 0.90371 0.91316 0.95091 0.93847 0.92783 0.90177 0.91418 0.90927 0.91628 0.89884 0.90293 0.90910 0.89487 0.89614 0.80587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.23 37.16 0.38 -1.88 16 2 C 0.10 1.59 5.01 -4.05 -0.02 1.57 16 3 N -0.60 -12.40 2.46 -175.07 -0.43 -12.83 16 4 C 0.25 6.32 5.22 -5.19 -0.03 6.29 16 5 C -0.52 -14.49 9.39 -34.44 -0.32 -14.81 16 6 H 0.05 1.50 7.81 -52.49 -0.41 1.09 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.36 13.29 55.43 0.74 -25.62 16 9 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.52 10.84 6.44 -10.99 -0.07 10.77 16 14 O -0.54 -13.82 15.46 5.55 0.09 -13.73 16 15 C -0.03 -0.46 2.03 -92.64 -0.19 -0.64 16 16 H 0.09 1.24 6.57 -51.93 -0.34 0.90 16 17 C -0.10 -1.48 4.90 -26.52 -0.13 -1.61 16 18 C -0.11 -1.22 5.86 -26.52 -0.16 -1.37 16 19 C -0.04 -0.44 6.31 -27.57 -0.17 -0.61 16 20 C 0.09 1.34 7.10 -82.34 -0.58 0.76 16 21 N -0.30 -4.95 12.56 33.75 0.42 -4.53 16 22 N -0.38 -5.98 4.02 -68.29 -0.27 -6.25 16 23 C 0.11 1.17 11.47 59.85 0.69 1.85 16 24 C 0.08 1.25 10.17 -17.36 -0.18 1.07 16 25 C -0.22 -3.71 5.23 -104.98 -0.55 -4.26 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 1.25 8.11 -51.93 -0.42 0.83 16 30 H 0.07 0.94 4.93 -51.93 -0.26 0.68 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.08 1.34 7.48 -51.93 -0.39 0.95 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.18 2.91 7.08 -52.49 -0.37 2.54 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -34.61 348.70 -7.43 -42.04 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -6.77 Total: 0.33 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.43 Total: -1.24 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: 0.46 Total: -49.23 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.09 Total: -13.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.61 -7.43 -42.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337008328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.246 kcal (2) G-P(sol) polarization free energy of solvation -34.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds