Wall clock time and date at job start Tue Mar 31 2020 06:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.46958 * 2 1 4 4 C 1.46506 * 119.99707 * 274.78405 * 3 2 1 5 5 C 1.50694 * 109.47573 * 270.00091 * 4 3 2 6 6 H 1.07999 * 119.99517 * 0.02562 * 5 4 3 7 7 C 1.37873 * 120.00552 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99708 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00315 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47256 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47125 * 119.99972 * 9 7 5 12 12 H 1.48503 * 109.46927 * 240.00105 * 9 7 5 13 13 C 1.34777 * 120.00401 * 94.78983 * 3 2 1 14 14 O 1.21286 * 120.00008 * 185.48763 * 13 3 2 15 15 C 1.50695 * 120.00110 * 5.48122 * 13 3 2 16 16 H 1.09007 * 109.71391 * 325.35618 * 15 13 3 17 17 C 1.53383 * 109.75696 * 204.72352 * 15 13 3 18 18 C 1.53034 * 109.71711 * 189.74504 * 17 15 13 19 19 C 1.53372 * 109.75058 * 71.72277 * 18 17 15 20 20 C 1.50955 * 108.20736 * 309.35758 * 19 18 17 21 21 N 1.30124 * 128.28554 * 197.08681 * 20 19 18 22 22 N 1.40309 * 108.12297 * 179.97438 * 21 20 19 23 23 C 1.46497 * 126.00523 * 179.87959 * 22 21 20 24 24 C 1.35195 * 107.99373 * 359.62566 * 22 21 20 25 25 C 1.34582 * 107.61788 * 0.24236 * 24 22 21 26 26 H 1.09002 * 109.47524 * 300.00163 * 1 2 3 27 27 H 1.09003 * 109.47056 * 60.00765 * 1 2 3 28 28 H 1.09000 * 109.46807 * 180.02562 * 1 2 3 29 29 H 1.08991 * 109.47601 * 239.99406 * 2 1 3 30 30 H 1.09003 * 109.47056 * 119.99235 * 2 1 3 31 31 H 1.09000 * 109.47142 * 30.00569 * 4 3 2 32 32 H 1.09000 * 109.46683 * 149.99810 * 4 3 2 33 33 H 0.96993 * 120.00277 * 179.97438 * 8 7 5 34 34 H 1.08998 * 109.43153 * 309.81847 * 17 15 13 35 35 H 1.08995 * 109.43011 * 69.67065 * 17 15 13 36 36 H 1.09004 * 109.42374 * 191.80430 * 18 17 15 37 37 H 1.08993 * 109.42444 * 311.63558 * 18 17 15 38 38 H 1.09002 * 109.71735 * 69.02986 * 19 18 17 39 39 H 1.08992 * 109.71398 * 189.67687 * 19 18 17 40 40 H 1.08999 * 109.47162 * 269.69926 * 23 22 21 41 41 H 1.09000 * 109.47256 * 149.70215 * 23 22 21 42 42 H 1.09000 * 109.46823 * 29.69668 * 23 22 21 43 43 H 1.08002 * 126.19758 * 180.26777 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1626 2.1070 -1.2644 5 6 3.5469 1.8840 -1.8165 6 1 4.2489 1.2633 -1.2795 7 6 3.9171 2.4715 -3.0076 8 7 3.0621 3.2270 -3.6618 9 14 5.6328 2.1945 -3.6923 10 1 6.3963 1.3128 -2.7730 11 1 5.5351 1.5522 -5.0276 12 1 6.3312 3.4988 -3.8202 13 6 2.3348 1.9841 1.1631 14 8 2.6435 3.1570 1.1738 15 6 2.3051 1.2011 2.4503 16 1 1.4998 0.4672 2.4157 17 6 2.0863 2.1541 3.6320 18 6 2.2969 1.4017 4.9479 19 6 3.7885 1.1012 5.1401 20 6 4.3060 0.4550 3.8779 21 7 5.4032 -0.2245 3.7114 22 7 5.4658 -0.6305 2.3698 23 6 6.5395 -1.4166 1.7571 24 6 4.3583 -0.1737 1.7431 25 6 3.6259 0.4995 2.6494 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8898 30 1 1.8933 -0.5137 0.8901 31 1 1.4237 1.7434 -1.9785 32 1 2.0075 3.1720 -1.0916 33 1 3.3225 3.6406 -4.4996 34 1 2.7958 2.9792 3.5686 35 1 1.0703 2.5471 3.5976 36 1 1.9407 2.0139 5.7765 37 1 1.7388 0.4659 4.9236 38 1 4.3295 2.0290 5.3266 39 1 3.9212 0.4219 5.9821 40 1 7.3012 -0.7448 1.3614 41 1 6.1309 -2.0201 0.9466 42 1 6.9852 -2.0696 2.5074 43 1 4.1067 -0.3224 0.7034 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337008328.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:23 Heat of formation + Delta-G solvation = 9.249296 kcal Electronic energy + Delta-G solvation = -24495.937574 eV Core-core repulsion = 21155.475445 eV Total energy + Delta-G solvation = -3340.462130 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.61756 -40.63062 -37.52740 -36.84034 -34.93591 -33.67090 -32.81514 -31.56118 -29.80885 -29.02315 -27.95476 -25.58303 -24.50494 -23.66193 -22.72871 -22.02577 -19.88589 -19.51567 -18.64630 -18.07147 -17.66594 -17.07450 -16.48430 -16.26372 -15.92072 -15.60928 -15.33835 -14.72885 -14.67062 -14.51570 -14.30019 -13.85288 -13.77452 -13.57959 -13.48439 -13.28923 -13.16259 -13.03531 -12.75877 -12.66142 -12.43555 -12.22697 -12.12252 -11.93951 -11.85354 -11.68682 -11.58038 -11.35312 -10.65370 -10.54512 -10.21029 -9.40261 -9.26951 -8.22416 -6.36660 0.86459 1.32783 1.36000 1.46014 1.53808 1.66336 1.95672 2.31211 2.49264 3.07312 3.35755 3.74326 3.84035 3.93899 4.08927 4.13859 4.17512 4.35322 4.37138 4.43289 4.45507 4.49910 4.62349 4.64122 4.68552 4.73157 4.92044 4.96005 5.00670 5.05006 5.10186 5.15759 5.24060 5.24960 5.31011 5.40990 5.51895 5.59946 5.70568 5.89443 6.05115 6.07812 6.70421 6.71492 6.83476 7.28927 7.52929 8.84927 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.014174 B = 0.006173 C = 0.005085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.030830 B = 4534.881926 C = 5504.658324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.097 3.903 3 N -0.600 5.600 4 C 0.261 3.739 5 C -0.535 4.535 6 H 0.055 0.945 7 C 0.008 3.992 8 N -0.929 5.929 9 Si 0.963 3.037 10 H -0.264 1.264 11 H -0.268 1.268 12 H -0.286 1.286 13 C 0.508 3.492 14 O -0.597 6.597 15 C -0.015 4.015 16 H 0.119 0.881 17 C -0.104 4.104 18 C -0.100 4.100 19 C -0.038 4.038 20 C 0.079 3.921 21 N -0.317 5.317 22 N -0.387 5.387 23 C 0.095 3.905 24 C 0.062 3.938 25 C -0.240 4.240 26 H 0.059 0.941 27 H 0.039 0.961 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.096 0.904 31 H 0.022 0.978 32 H -0.006 1.006 33 H 0.266 0.734 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.072 0.928 41 H 0.108 0.892 42 H 0.104 0.896 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 -13.012 15.041 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.025 4.025 3 N -0.330 5.330 4 C 0.140 3.860 5 C -0.574 4.574 6 H 0.073 0.927 7 C -0.191 4.191 8 N -0.569 5.569 9 Si 0.787 3.213 10 H -0.188 1.188 11 H -0.193 1.193 12 H -0.213 1.213 13 C 0.297 3.703 14 O -0.479 6.479 15 C -0.038 4.038 16 H 0.137 0.863 17 C -0.142 4.142 18 C -0.138 4.138 19 C -0.077 4.077 20 C -0.088 4.088 21 N -0.139 5.139 22 N -0.169 5.169 23 C -0.045 4.045 24 C -0.083 4.083 25 C -0.252 4.252 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.114 0.886 29 H 0.093 0.907 30 H 0.114 0.886 31 H 0.040 0.960 32 H 0.012 0.988 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.121 0.879 40 H 0.090 0.910 41 H 0.126 0.874 42 H 0.123 0.877 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -0.004 -12.894 15.315 20.020 hybrid contribution 0.311 0.798 -1.800 1.993 sum 0.307 -12.095 13.515 18.140 Atomic orbital electron populations 1.22150 0.94584 1.03494 1.01770 1.21789 0.95537 0.81644 1.03572 1.48228 1.63456 1.14910 1.06436 1.18692 0.95759 0.91069 0.80483 1.21705 0.99227 1.30435 1.06007 0.92679 1.25827 1.01481 0.94616 0.97205 1.70061 1.36978 1.33047 1.16779 0.85440 0.79318 0.77909 0.78587 1.18839 1.19322 1.21270 1.21200 0.75820 0.87089 0.86156 1.90605 1.50471 1.19242 1.87536 1.19755 0.95345 0.96939 0.91713 0.86333 1.21475 1.02287 0.97179 0.93257 1.21533 0.94330 1.01534 0.96377 1.20312 0.96431 0.99943 0.91009 1.22814 0.91676 0.96916 0.97431 1.76895 1.21190 1.20133 0.95661 1.48759 1.18103 1.43475 1.06535 1.22141 0.87951 0.95097 0.99281 1.22314 0.88685 0.98179 0.99141 1.19680 1.01141 1.10136 0.94290 0.92181 0.94160 0.88616 0.90722 0.88577 0.95967 0.98811 0.92517 0.93369 0.90507 0.88034 0.89866 0.89938 0.87878 0.90985 0.87363 0.87725 0.80989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.06 10.23 71.98 0.74 -3.33 16 2 C 0.10 2.94 5.01 86.38 0.43 3.37 16 3 N -0.60 -25.34 2.46 -826.18 -2.03 -27.37 16 4 C 0.26 14.12 5.22 85.63 0.45 14.57 16 5 C -0.54 -30.44 9.39 25.60 0.24 -30.20 16 6 H 0.05 3.06 7.81 -2.91 -0.02 3.03 16 7 C 0.01 0.43 5.46 84.65 0.46 0.89 16 8 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 9 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 10 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 13 C 0.51 21.83 6.44 87.66 0.56 22.40 16 14 O -0.60 -32.24 15.46 -3.05 -0.05 -32.28 16 15 C -0.02 -0.48 2.03 -12.10 -0.02 -0.50 16 16 H 0.12 2.95 6.57 -2.38 -0.02 2.93 16 17 C -0.10 -2.84 4.90 30.73 0.15 -2.69 16 18 C -0.10 -1.84 5.86 30.73 0.18 -1.66 16 19 C -0.04 -0.82 6.31 30.05 0.19 -0.63 16 20 C 0.08 2.37 7.10 43.44 0.31 2.68 16 21 N -0.32 -10.05 12.56 -47.13 -0.59 -10.64 16 22 N -0.39 -11.51 4.02 -369.98 -1.49 -13.00 16 23 C 0.10 1.94 11.47 127.77 1.47 3.40 16 24 C 0.06 2.01 10.17 83.34 0.85 2.86 16 25 C -0.24 -7.71 5.23 -20.10 -0.11 -7.81 16 26 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.07 2.33 8.11 -2.39 -0.02 2.31 16 30 H 0.10 2.41 4.93 -2.39 -0.01 2.40 16 31 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 32 H -0.01 -0.40 7.35 -2.39 -0.02 -0.41 16 33 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 34 H 0.05 1.63 7.48 -2.39 -0.02 1.61 16 35 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.08 1.30 8.10 -2.39 -0.02 1.28 16 38 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.07 1.47 8.14 -2.39 -0.02 1.46 16 41 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.17 5.59 7.08 -2.91 -0.02 5.57 16 Total: -1.00 -79.00 348.70 5.04 -73.96 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.99 Total: 15.42 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 5.90 Total: 3.35 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -3.83 Total: -107.09 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.05 Total: -32.28 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -79.00 5.04 -73.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337008328.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.207 kcal (2) G-P(sol) polarization free energy of solvation -78.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds