Wall clock time and date at job start Tue Mar 31 2020 06:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47316 * 2 1 4 4 C 1.46505 * 119.99731 * 267.42814 * 3 2 1 5 5 C 1.50700 * 109.46948 * 96.21746 * 4 3 2 6 6 H 1.07998 * 120.00032 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00015 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00070 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99941 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47371 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47088 * 120.00295 * 9 7 5 12 12 H 1.48499 * 109.46859 * 239.99936 * 9 7 5 13 13 C 1.34773 * 120.00257 * 87.70102 * 3 2 1 14 14 O 1.21288 * 119.99772 * 4.48665 * 13 3 2 15 15 C 1.50697 * 120.00186 * 184.48529 * 13 3 2 16 16 H 1.09001 * 109.71285 * 33.10476 * 15 13 3 17 17 C 1.53392 * 109.71532 * 153.75490 * 15 13 3 18 18 C 1.53035 * 109.71359 * 170.21463 * 17 15 13 19 19 C 1.53366 * 109.74994 * 288.26955 * 18 17 15 20 20 C 1.50951 * 108.20614 * 50.65051 * 19 18 17 21 21 N 1.30125 * 128.28926 * 163.17102 * 20 19 18 22 22 N 1.40310 * 108.12430 * 180.30686 * 21 20 19 23 23 C 1.46505 * 126.00375 * 179.97438 * 22 21 20 24 24 C 1.35204 * 107.99452 * 359.95200 * 22 21 20 25 25 C 1.34571 * 107.61250 * 359.96866 * 24 22 21 26 26 H 1.09000 * 109.47510 * 295.63781 * 1 2 3 27 27 H 1.09004 * 109.47028 * 55.64352 * 1 2 3 28 28 H 1.08998 * 109.47147 * 175.63513 * 1 2 3 29 29 H 1.08999 * 109.47769 * 239.99752 * 2 1 3 30 30 H 1.09003 * 109.47077 * 119.99755 * 2 1 3 31 31 H 1.08997 * 109.46971 * 216.21155 * 4 3 2 32 32 H 1.08996 * 109.47172 * 336.21285 * 4 3 2 33 33 H 0.96998 * 120.00720 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.43109 * 290.28867 * 17 15 13 35 35 H 1.09001 * 109.42969 * 50.14001 * 17 15 13 36 36 H 1.09003 * 109.42206 * 168.18874 * 18 17 15 37 37 H 1.08999 * 109.37962 * 48.33199 * 18 17 15 38 38 H 1.09000 * 109.71921 * 290.97601 * 19 18 17 39 39 H 1.08997 * 109.75701 * 170.34726 * 19 18 17 40 40 H 1.09003 * 109.46653 * 269.99560 * 23 22 21 41 41 H 1.08993 * 109.47060 * 29.99686 * 23 22 21 42 42 H 1.09000 * 109.47079 * 150.00237 * 23 22 21 43 43 H 1.07990 * 126.18980 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3162 2.0528 -1.2675 5 6 1.1291 2.8802 -1.6886 6 1 0.2415 2.9032 -1.0738 7 6 1.1763 3.6080 -2.8588 8 7 2.2573 3.5804 -3.6071 9 14 -0.2954 4.6331 -3.3811 10 1 -1.3777 4.4946 -2.3739 11 1 0.1061 6.0590 -3.4841 12 1 -0.7847 4.1600 -4.7009 13 6 2.1988 2.0322 1.1662 14 8 2.0353 1.4497 2.2174 15 6 2.6038 3.4837 1.1641 16 1 2.1633 3.9871 0.3035 17 6 2.1272 4.1558 2.4579 18 6 2.7416 5.5529 2.5706 19 6 4.2384 5.4370 2.8844 20 6 4.8560 4.4826 1.8912 21 7 6.1144 4.3243 1.6004 22 7 6.2130 3.3301 0.6152 23 6 7.4522 2.8434 0.0038 24 6 4.9635 2.8998 0.3295 25 6 4.1075 3.5927 1.1029 26 1 -0.3634 0.4446 0.9265 27 1 -0.3633 0.5800 -0.8484 28 1 -0.3633 -1.0247 -0.0782 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1837 2.7004 -1.1405 32 1 2.5288 1.3065 -2.0329 33 1 2.2907 4.0926 -4.4302 34 1 1.0404 4.2377 2.4449 35 1 2.4346 3.5544 3.3134 36 1 2.2454 6.1038 3.3695 37 1 2.6089 6.0835 1.6277 38 1 4.3735 5.0534 3.8957 39 1 4.7102 6.4156 2.7962 40 1 7.6802 3.4400 -0.8795 41 1 8.2689 2.9288 0.7206 42 1 7.3295 1.7995 -0.2846 43 1 4.7003 2.1374 -0.3886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337008329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:27 Heat of formation + Delta-G solvation = 28.909053 kcal Electronic energy + Delta-G solvation = -24704.286763 eV Core-core repulsion = 21364.677145 eV Total energy + Delta-G solvation = -3339.609619 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21173 -39.02508 -36.19560 -35.08535 -32.83965 -32.35951 -31.74821 -29.96078 -28.25764 -27.08708 -26.78838 -23.99523 -22.90429 -22.25572 -21.36508 -20.57695 -18.51621 -17.92217 -16.80829 -16.55200 -15.90309 -15.41079 -15.11464 -14.59146 -14.53275 -14.19771 -13.92630 -13.41297 -13.18551 -12.76840 -12.68129 -12.51261 -12.50211 -12.16068 -12.12873 -11.87138 -11.50775 -11.40523 -11.24953 -10.98959 -10.89015 -10.80184 -10.55745 -10.44590 -10.37236 -9.99767 -9.94336 -9.66922 -8.99304 -8.84562 -8.56087 -7.82976 -7.66158 -6.19779 -4.25785 2.27288 2.80645 3.12974 3.20723 3.29917 3.33230 3.50431 4.05682 4.33179 4.62125 5.10289 5.11626 5.13696 5.25746 5.30404 5.32236 5.50760 5.52999 5.60020 5.75314 5.83578 5.86561 5.94879 5.98573 6.01992 6.09121 6.21142 6.27820 6.33348 6.39606 6.54183 6.57157 6.63619 6.74638 6.86717 6.90241 7.04456 7.15045 7.38262 7.59020 7.76108 8.05625 8.08088 8.36993 8.80548 9.10188 9.41908 10.86840 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.006611 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.304725 B = 4234.177213 C = 4580.708102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.118 3.882 3 N -0.600 5.600 4 C 0.229 3.771 5 C -0.533 4.533 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.890 5.890 9 Si 0.892 3.108 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.283 1.283 13 C 0.529 3.471 14 O -0.573 6.573 15 C -0.031 4.031 16 H 0.122 0.878 17 C -0.100 4.100 18 C -0.115 4.115 19 C -0.034 4.034 20 C 0.083 3.917 21 N -0.300 5.300 22 N -0.388 5.388 23 C 0.108 3.892 24 C 0.069 3.931 25 C -0.209 4.209 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.034 0.966 33 H 0.264 0.736 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.899 -0.365 6.546 8.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.006 4.006 3 N -0.330 5.330 4 C 0.109 3.891 5 C -0.572 4.572 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.529 5.529 9 Si 0.720 3.280 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 C 0.317 3.683 14 O -0.454 6.454 15 C -0.053 4.053 16 H 0.139 0.861 17 C -0.138 4.138 18 C -0.153 4.153 19 C -0.073 4.073 20 C -0.085 4.085 21 N -0.122 5.122 22 N -0.170 5.170 23 C -0.034 4.034 24 C -0.075 4.075 25 C -0.221 4.221 26 H 0.069 0.931 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 6.246 -0.316 7.034 9.413 hybrid contribution -1.520 0.195 -1.092 1.882 sum 4.726 -0.121 5.943 7.594 Atomic orbital electron populations 1.22104 0.96512 1.00828 1.02756 1.21209 0.94395 0.83665 1.01300 1.48274 1.63625 1.13166 1.07964 1.19607 0.97246 0.92925 0.79280 1.21522 1.00896 1.27853 1.06885 0.91866 1.24926 0.96085 0.96519 0.96187 1.69911 1.27343 1.41450 1.14151 0.86520 0.82798 0.80080 0.78612 1.19559 1.20828 1.20953 1.20370 0.76173 0.88589 0.83143 1.90556 1.54079 1.69017 1.31742 1.19819 0.90768 0.93599 1.01115 0.86070 1.21409 1.00040 0.95184 0.97169 1.21569 0.93860 0.97550 1.02290 1.20089 0.94951 0.96479 0.95808 1.22239 0.90331 0.97872 0.98076 1.76887 1.19159 1.08564 1.07581 1.48368 1.05853 1.30852 1.31953 1.21743 0.83885 0.99636 0.98094 1.22276 0.84173 1.00805 1.00248 1.19564 0.95226 1.03610 1.03698 0.93076 0.91190 0.93099 0.91360 0.91539 0.93782 0.94781 0.92654 0.91574 0.90871 0.91125 0.91180 0.90177 0.90382 0.91021 0.89825 0.89774 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 10.23 37.15 0.38 -2.46 16 2 C 0.12 2.15 6.18 -4.04 -0.03 2.12 16 3 N -0.60 -12.38 2.48 -175.06 -0.43 -12.81 16 4 C 0.23 5.19 4.34 -5.19 -0.02 5.17 16 5 C -0.53 -13.26 7.95 -34.44 -0.27 -13.54 16 6 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 7 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -23.80 13.29 55.43 0.74 -23.06 16 9 Si 0.89 20.16 29.54 -169.99 -5.02 15.13 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 C 0.53 11.19 6.38 -10.99 -0.07 11.12 16 14 O -0.57 -13.16 15.52 5.55 0.09 -13.07 16 15 C -0.03 -0.61 2.06 -92.63 -0.19 -0.80 16 16 H 0.12 2.61 6.12 -51.93 -0.32 2.30 16 17 C -0.10 -1.68 4.92 -26.51 -0.13 -1.81 16 18 C -0.11 -1.59 5.86 -26.52 -0.16 -1.75 16 19 C -0.03 -0.48 6.31 -27.57 -0.17 -0.66 16 20 C 0.08 1.48 7.10 -82.35 -0.58 0.90 16 21 N -0.30 -5.47 12.56 33.75 0.42 -5.05 16 22 N -0.39 -6.56 4.02 -68.29 -0.27 -6.83 16 23 C 0.11 1.26 11.47 59.85 0.69 1.95 16 24 C 0.07 1.27 9.78 -17.36 -0.17 1.10 16 25 C -0.21 -4.02 5.25 -104.98 -0.55 -4.57 16 26 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.07 1.33 8.00 -51.93 -0.42 0.91 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 1.14 7.82 -51.93 -0.41 0.74 16 30 H 0.07 1.20 7.43 -51.93 -0.39 0.82 16 31 H 0.04 1.03 4.29 -51.93 -0.22 0.80 16 32 H 0.03 0.81 7.80 -51.93 -0.41 0.40 16 33 H 0.26 6.76 8.31 -40.82 -0.34 6.43 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.29 7.47 -51.93 -0.39 0.90 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.18 3.19 6.28 -52.49 -0.33 2.86 16 LS Contribution 344.72 15.07 5.19 5.19 Total: -1.00 -30.39 344.72 -7.31 -37.70 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -6.64 Total: 4.44 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.38 Total: -1.63 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.45 Total: -47.76 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.09 Total: -13.07 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.39 -7.31 -37.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337008329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.610 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds