Wall clock time and date at job start Tue Mar 31 2020 06:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46502 * 109.47316 * 2 1 4 4 C 1.46505 * 119.99731 * 267.42814 * 3 2 1 5 5 C 1.50700 * 109.46948 * 96.21746 * 4 3 2 6 6 H 1.07998 * 120.00032 * 359.97438 * 5 4 3 7 7 C 1.37877 * 120.00015 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00070 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99941 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47371 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47088 * 120.00295 * 9 7 5 12 12 H 1.48499 * 109.46859 * 239.99936 * 9 7 5 13 13 C 1.34773 * 120.00257 * 87.70102 * 3 2 1 14 14 O 1.21288 * 119.99772 * 4.48665 * 13 3 2 15 15 C 1.50697 * 120.00186 * 184.48529 * 13 3 2 16 16 H 1.09001 * 109.71285 * 33.10476 * 15 13 3 17 17 C 1.53392 * 109.71532 * 153.75490 * 15 13 3 18 18 C 1.53035 * 109.71359 * 170.21463 * 17 15 13 19 19 C 1.53366 * 109.74994 * 288.26955 * 18 17 15 20 20 C 1.50951 * 108.20614 * 50.65051 * 19 18 17 21 21 N 1.30125 * 128.28926 * 163.17102 * 20 19 18 22 22 N 1.40310 * 108.12430 * 180.30686 * 21 20 19 23 23 C 1.46505 * 126.00375 * 179.97438 * 22 21 20 24 24 C 1.35204 * 107.99452 * 359.95200 * 22 21 20 25 25 C 1.34571 * 107.61250 * 359.96866 * 24 22 21 26 26 H 1.09000 * 109.47510 * 295.63781 * 1 2 3 27 27 H 1.09004 * 109.47028 * 55.64352 * 1 2 3 28 28 H 1.08998 * 109.47147 * 175.63513 * 1 2 3 29 29 H 1.08999 * 109.47769 * 239.99752 * 2 1 3 30 30 H 1.09003 * 109.47077 * 119.99755 * 2 1 3 31 31 H 1.08997 * 109.46971 * 216.21155 * 4 3 2 32 32 H 1.08996 * 109.47172 * 336.21285 * 4 3 2 33 33 H 0.96998 * 120.00720 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.43109 * 290.28867 * 17 15 13 35 35 H 1.09001 * 109.42969 * 50.14001 * 17 15 13 36 36 H 1.09003 * 109.42206 * 168.18874 * 18 17 15 37 37 H 1.08999 * 109.37962 * 48.33199 * 18 17 15 38 38 H 1.09000 * 109.71921 * 290.97601 * 19 18 17 39 39 H 1.08997 * 109.75701 * 170.34726 * 19 18 17 40 40 H 1.09003 * 109.46653 * 269.99560 * 23 22 21 41 41 H 1.08993 * 109.47060 * 29.99686 * 23 22 21 42 42 H 1.09000 * 109.47079 * 150.00237 * 23 22 21 43 43 H 1.07990 * 126.18980 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3162 2.0528 -1.2675 5 6 1.1291 2.8802 -1.6886 6 1 0.2415 2.9032 -1.0738 7 6 1.1763 3.6080 -2.8588 8 7 2.2573 3.5804 -3.6071 9 14 -0.2954 4.6331 -3.3811 10 1 -1.3777 4.4946 -2.3739 11 1 0.1061 6.0590 -3.4841 12 1 -0.7847 4.1600 -4.7009 13 6 2.1988 2.0322 1.1662 14 8 2.0353 1.4497 2.2174 15 6 2.6038 3.4837 1.1641 16 1 2.1633 3.9871 0.3035 17 6 2.1272 4.1558 2.4579 18 6 2.7416 5.5529 2.5706 19 6 4.2384 5.4370 2.8844 20 6 4.8560 4.4826 1.8912 21 7 6.1144 4.3243 1.6004 22 7 6.2130 3.3301 0.6152 23 6 7.4522 2.8434 0.0038 24 6 4.9635 2.8998 0.3295 25 6 4.1075 3.5927 1.1029 26 1 -0.3634 0.4446 0.9265 27 1 -0.3633 0.5800 -0.8484 28 1 -0.3633 -1.0247 -0.0782 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.1837 2.7004 -1.1405 32 1 2.5288 1.3065 -2.0329 33 1 2.2907 4.0926 -4.4302 34 1 1.0404 4.2377 2.4449 35 1 2.4346 3.5544 3.3134 36 1 2.2454 6.1038 3.3695 37 1 2.6089 6.0835 1.6277 38 1 4.3735 5.0534 3.8957 39 1 4.7102 6.4156 2.7962 40 1 7.6802 3.4400 -0.8795 41 1 8.2689 2.9288 0.7206 42 1 7.3295 1.7995 -0.2846 43 1 4.7003 2.1374 -0.3886 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337008329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:26 Heat of formation + Delta-G solvation = 11.891532 kcal Electronic energy + Delta-G solvation = -24705.024699 eV Core-core repulsion = 21364.677145 eV Total energy + Delta-G solvation = -3340.347554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.58218 -40.65300 -37.52321 -36.78452 -34.67321 -33.74310 -33.04626 -31.47945 -29.62978 -28.91279 -27.99583 -25.42264 -24.74435 -23.59719 -22.68974 -21.98282 -19.87072 -19.50751 -18.63787 -18.13727 -17.40847 -17.02759 -16.51212 -16.19138 -15.90536 -15.60375 -15.34721 -14.83179 -14.55713 -14.33202 -14.15644 -13.83521 -13.82422 -13.61075 -13.49225 -13.28038 -13.13683 -12.98655 -12.73388 -12.63083 -12.51731 -12.17360 -12.13028 -11.83108 -11.72914 -11.62051 -11.52937 -11.36190 -10.67898 -10.47235 -10.17058 -9.43389 -9.20015 -8.16757 -6.28069 0.89661 1.40559 1.45032 1.54179 1.59167 1.71645 1.86248 2.38151 2.51367 3.14303 3.40342 3.77181 3.87181 3.99514 4.14608 4.18983 4.23363 4.41339 4.42128 4.47139 4.48279 4.59078 4.64039 4.69310 4.73562 4.77276 4.82472 4.94664 4.99629 5.06335 5.10344 5.17534 5.22545 5.28140 5.31411 5.40477 5.52213 5.71064 5.73574 5.93376 6.09187 6.12252 6.59901 6.72543 6.87157 7.36092 7.47438 8.88723 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012196 B = 0.006611 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.304725 B = 4234.177213 C = 4580.708102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.110 3.890 3 N -0.600 5.600 4 C 0.245 3.755 5 C -0.534 4.534 6 H 0.053 0.947 7 C 0.024 3.976 8 N -0.917 5.917 9 Si 0.947 3.053 10 H -0.269 1.269 11 H -0.281 1.281 12 H -0.281 1.281 13 C 0.526 3.474 14 O -0.593 6.593 15 C -0.027 4.027 16 H 0.096 0.904 17 C -0.097 4.097 18 C -0.106 4.106 19 C -0.033 4.033 20 C 0.075 3.925 21 N -0.315 5.315 22 N -0.387 5.387 23 C 0.097 3.903 24 C 0.058 3.942 25 C -0.234 4.234 26 H 0.037 0.963 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.951 0.116 7.119 8.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.013 4.013 3 N -0.330 5.330 4 C 0.125 3.875 5 C -0.573 4.573 6 H 0.072 0.928 7 C -0.176 4.176 8 N -0.557 5.557 9 Si 0.773 3.227 10 H -0.194 1.194 11 H -0.206 1.206 12 H -0.207 1.207 13 C 0.315 3.685 14 O -0.476 6.476 15 C -0.049 4.049 16 H 0.114 0.886 17 C -0.135 4.135 18 C -0.144 4.144 19 C -0.072 4.072 20 C -0.093 4.093 21 N -0.137 5.137 22 N -0.169 5.169 23 C -0.043 4.043 24 C -0.087 4.087 25 C -0.246 4.246 26 H 0.056 0.944 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.124 0.876 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.100 0.900 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.310 0.155 7.603 9.882 hybrid contribution -1.485 -0.042 -1.287 1.965 sum 4.825 0.113 6.316 7.949 Atomic orbital electron populations 1.22007 0.95651 1.02476 1.01076 1.21429 0.95106 0.82541 1.02187 1.48290 1.63482 1.14046 1.07225 1.19287 0.96339 0.92255 0.79647 1.21655 1.01046 1.27907 1.06660 0.92840 1.25547 0.98179 0.97529 0.96338 1.69991 1.28780 1.42365 1.14560 0.85660 0.80146 0.78685 0.78169 1.19364 1.20645 1.20652 1.20699 0.75640 0.89294 0.82831 1.90532 1.55148 1.69678 1.32247 1.19739 0.91331 0.92337 1.01536 0.88615 1.21419 1.00235 0.96666 0.95221 1.21550 0.93952 0.95718 1.03208 1.20263 0.94703 0.96683 0.95559 1.22798 0.90038 0.98077 0.98381 1.76836 1.19424 1.09184 1.08218 1.48767 1.06623 1.30143 1.31417 1.22143 0.82511 1.00916 0.98748 1.22312 0.85216 1.00928 1.00239 1.19720 0.95076 1.04896 1.04925 0.94422 0.93074 0.89751 0.89823 0.91237 0.94349 0.95917 0.92594 0.91521 0.91671 0.87633 0.92014 0.88612 0.88402 0.89969 0.88084 0.87791 0.81031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 10.23 71.98 0.74 -4.50 16 2 C 0.11 3.97 6.18 86.38 0.53 4.50 16 3 N -0.60 -25.09 2.48 -826.16 -2.04 -27.13 16 4 C 0.25 11.31 4.34 85.63 0.37 11.68 16 5 C -0.53 -26.88 7.95 25.60 0.20 -26.68 16 6 H 0.05 2.76 7.81 -2.91 -0.02 2.74 16 7 C 0.02 1.25 5.46 84.66 0.46 1.71 16 8 N -0.92 -49.32 13.29 21.45 0.28 -49.03 16 9 Si 0.95 41.28 29.54 68.60 2.03 43.30 16 10 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 13 C 0.53 22.57 6.38 87.66 0.56 23.12 16 14 O -0.59 -27.45 15.52 -3.06 -0.05 -27.49 16 15 C -0.03 -1.08 2.06 -12.10 -0.02 -1.11 16 16 H 0.10 4.25 6.12 -2.39 -0.01 4.24 16 17 C -0.10 -3.22 4.92 30.74 0.15 -3.07 16 18 C -0.11 -2.76 5.86 30.73 0.18 -2.58 16 19 C -0.03 -0.87 6.31 30.05 0.19 -0.68 16 20 C 0.07 2.61 7.10 43.44 0.31 2.92 16 21 N -0.31 -11.16 12.56 -47.13 -0.59 -11.75 16 22 N -0.39 -12.85 4.02 -369.97 -1.49 -14.33 16 23 C 0.10 2.12 11.47 127.77 1.47 3.59 16 24 C 0.06 2.17 9.78 83.33 0.81 2.98 16 25 C -0.23 -9.04 5.25 -20.10 -0.11 -9.15 16 26 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 1.92 8.00 -2.39 -0.02 1.90 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.08 2.73 7.82 -2.39 -0.02 2.72 16 30 H 0.07 2.48 7.43 -2.39 -0.02 2.46 16 31 H 0.04 1.84 4.29 -2.39 -0.01 1.83 16 32 H 0.02 1.10 7.80 -2.39 -0.02 1.08 16 33 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 34 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 2.26 7.47 -2.39 -0.02 2.24 16 36 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 1.71 8.10 -2.39 -0.02 1.69 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 42 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.17 6.40 6.28 -2.92 -0.02 6.38 16 Total: -1.00 -64.75 344.72 4.98 -59.76 By element: Atomic # 1 Polarization: 22.94 SS G_CDS: 1.00 Total: 23.94 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: 5.85 Total: 2.73 kcal Atomic # 7 Polarization: -98.41 SS G_CDS: -3.84 Total: -102.25 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.49 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.30 kcal Total: -64.75 4.98 -59.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337008329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.656 kcal (2) G-P(sol) polarization free energy of solvation -64.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds