Wall clock time and date at job start Tue Mar 31 2020 07:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34946 * 126.03263 * 2 1 4 4 C 1.35315 * 107.74606 * 179.75202 * 3 2 1 5 5 C 1.39878 * 107.91880 * 0.39650 * 4 3 2 6 6 C 1.50696 * 125.89951 * 179.86371 * 5 4 3 7 7 C 1.53005 * 109.46802 * 124.71487 * 6 5 4 8 8 C 1.50705 * 109.46756 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00025 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99603 * 180.02562 * 8 7 6 11 11 C 1.37103 * 119.99533 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99621 * 137.56849 * 11 10 8 13 13 C 1.38950 * 120.00204 * 317.55842 * 11 10 8 14 14 N 1.31413 * 119.99891 * 339.86894 * 13 11 10 15 15 Si 1.86799 * 119.99953 * 159.86412 * 13 11 10 16 16 H 1.48501 * 109.47004 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46888 * 120.00668 * 15 13 11 18 18 H 1.48508 * 109.46990 * 240.00502 * 15 13 11 19 19 C 1.46496 * 120.00466 * 359.97438 * 10 8 7 20 20 C 1.54258 * 110.03526 * 119.85684 * 19 10 8 21 21 C 1.54972 * 104.15800 * 95.75841 * 20 19 10 22 22 C 1.54889 * 102.77669 * 37.88848 * 21 20 19 23 23 C 1.53875 * 110.03179 * 237.07960 * 19 10 8 24 24 N 1.30841 * 108.19814 * 359.60018 * 5 4 3 25 25 H 1.09005 * 109.46427 * 269.97450 * 1 2 3 26 26 H 1.09003 * 109.47177 * 29.96938 * 1 2 3 27 27 H 1.08995 * 109.47184 * 149.97673 * 1 2 3 28 28 H 1.08001 * 126.13219 * 359.97438 * 3 2 1 29 29 H 1.08006 * 126.04481 * 180.27178 * 4 3 2 30 30 H 1.08994 * 109.47190 * 4.71708 * 6 5 4 31 31 H 1.09001 * 109.47183 * 244.71222 * 6 5 4 32 32 H 1.08994 * 109.47067 * 60.00146 * 7 6 5 33 33 H 1.08999 * 109.47196 * 299.99311 * 7 6 5 34 34 H 0.97003 * 120.00038 * 175.12060 * 14 13 11 35 35 H 1.09003 * 110.01268 * 358.46548 * 19 10 8 36 36 H 1.08996 * 110.48968 * 214.40334 * 20 19 10 37 37 H 1.09005 * 110.48977 * 337.05038 * 20 19 10 38 38 H 1.09008 * 110.71469 * 279.57266 * 21 20 19 39 39 H 1.08994 * 110.92513 * 156.30161 * 21 20 19 40 40 H 1.09000 * 110.48362 * 203.40691 * 22 21 20 41 41 H 1.08998 * 110.59561 * 80.81923 * 22 21 20 42 42 H 1.08994 * 110.03391 * 359.95156 * 23 19 10 43 43 H 1.09004 * 110.03103 * 121.38005 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0056 5 6 3.5347 -0.7320 -0.0001 6 6 4.7497 -1.6235 0.0003 7 6 4.6710 -2.5923 1.1819 8 6 5.8864 -3.4833 1.1827 9 8 6.7321 -3.3563 0.3225 10 7 6.0332 -4.4220 2.1386 11 6 7.1386 -5.2330 2.1390 12 1 7.6450 -5.4551 3.0666 13 6 7.6073 -5.7692 0.9459 14 7 6.8124 -5.8442 -0.0979 15 14 9.3674 -6.3834 0.8256 16 1 10.0498 -6.1885 2.1301 17 1 9.3651 -7.8274 0.4794 18 1 10.0861 -5.6228 -0.2281 19 6 5.0115 -4.5758 3.1772 20 6 4.4156 -5.9977 3.1259 21 6 5.2241 -6.7861 4.1873 22 6 5.4144 -5.7434 5.3169 23 6 5.6467 -4.4141 4.5694 24 7 2.2892 -1.1327 -0.0001 25 1 -0.3632 -0.0005 1.0278 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 1.9281 2.1194 -0.0004 29 1 4.4211 1.2965 0.0112 30 1 5.6482 -1.0130 0.0902 31 1 4.7861 -2.1886 -0.9311 32 1 3.7726 -3.2027 1.0920 33 1 4.6348 -2.0272 2.1133 34 1 7.1586 -6.1524 -0.9500 35 1 4.2237 -3.8355 3.0381 36 1 3.3582 -5.9780 3.3894 37 1 4.5553 -6.4345 2.1370 38 1 6.1872 -7.0991 3.7842 39 1 4.6595 -7.6463 4.5468 40 1 6.2824 -5.9953 5.9261 41 1 4.5197 -5.6816 5.9363 42 1 6.7152 -4.2221 4.4723 43 1 5.1670 -3.5954 5.1059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340570646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:25 Heat of formation + Delta-G solvation = 43.602569 kcal Electronic energy + Delta-G solvation = -23774.750231 eV Core-core repulsion = 20435.777771 eV Total energy + Delta-G solvation = -3338.972460 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.99107 -38.79435 -36.65755 -34.22468 -33.01740 -31.74886 -30.96019 -29.75498 -27.91740 -27.04398 -26.73890 -24.85672 -23.00191 -21.00381 -20.13683 -19.68985 -19.40192 -18.51359 -16.93051 -16.15692 -15.72197 -15.37032 -14.90706 -14.52690 -14.26586 -14.20721 -13.84002 -13.47445 -13.40493 -12.90422 -12.83646 -12.63122 -12.38330 -11.89447 -11.72355 -11.28092 -11.16749 -10.91181 -10.83023 -10.61237 -10.48880 -10.45550 -10.43970 -10.25855 -10.14270 -10.07317 -9.76212 -9.69320 -9.03301 -8.58917 -8.41822 -7.86475 -6.95033 -5.95033 -3.68592 2.01191 2.62585 3.00652 3.39799 3.49422 3.50596 4.36115 4.52016 4.53944 4.81168 4.99376 5.03246 5.19504 5.28945 5.34919 5.35519 5.47105 5.59304 5.67109 5.82799 5.91244 5.96906 6.08656 6.15051 6.19681 6.21801 6.29970 6.34686 6.40296 6.49058 6.58598 6.61128 6.70170 6.74593 6.75401 6.94925 7.04157 7.10610 7.11611 7.27569 7.78528 7.93661 8.43824 9.23719 9.35114 9.85132 10.48038 11.12735 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.004665 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.545616 B = 6001.083906 C = 7111.399344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.386 5.386 3 C 0.045 3.955 4 C -0.268 4.268 5 C 0.087 3.913 6 C -0.020 4.020 7 C -0.124 4.124 8 C 0.477 3.523 9 O -0.539 6.539 10 N -0.449 5.449 11 C -0.334 4.334 12 H 0.077 0.923 13 C 0.073 3.927 14 N -0.831 5.831 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.289 1.289 18 H -0.283 1.283 19 C 0.130 3.870 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.118 4.118 23 C -0.131 4.131 24 N -0.293 5.293 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.169 0.831 29 H 0.146 0.854 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.260 0.740 35 H 0.066 0.934 36 H 0.048 0.952 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.502 9.875 4.544 15.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.168 5.168 3 C -0.101 4.101 4 C -0.298 4.298 5 C -0.079 4.079 6 C -0.059 4.059 7 C -0.166 4.166 8 C 0.264 3.736 9 O -0.417 6.417 10 N -0.172 5.172 11 C -0.461 4.461 12 H 0.094 0.906 13 C -0.136 4.136 14 N -0.466 5.466 15 Si 0.725 3.275 16 H -0.198 1.198 17 H -0.216 1.216 18 H -0.209 1.209 19 C 0.024 3.976 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.169 4.169 24 N -0.115 5.115 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.105 0.895 28 H 0.187 0.813 29 H 0.164 0.836 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.067 8.844 3.918 15.465 hybrid contribution 1.084 0.523 -0.101 1.208 sum -10.983 9.367 3.816 14.931 Atomic orbital electron populations 1.21766 0.74790 1.04118 1.03034 1.48541 1.06407 1.04057 1.57796 1.22448 0.91350 0.93237 1.03070 1.21483 0.96882 0.94699 1.16724 1.22666 0.93553 0.94050 0.97642 1.19771 0.90956 0.95155 1.00054 1.21527 0.99493 0.97599 0.97961 1.19869 0.87590 0.81616 0.84498 1.90507 1.44261 1.70190 1.36733 1.43376 1.18820 1.30027 1.24938 1.18836 1.05190 1.27566 0.94469 0.90582 1.25085 0.97735 0.94462 0.96331 1.69902 1.34128 1.41381 1.01179 0.86394 0.85332 0.77500 0.78284 1.19761 1.21558 1.20874 1.21665 0.90747 0.96181 0.88995 1.22570 0.96705 0.96212 1.00603 1.22453 1.01289 0.96376 0.95272 1.22272 0.99937 0.95968 0.97445 1.22494 1.02310 0.96428 0.95691 1.77408 1.01547 1.07138 1.25438 0.91071 0.89907 0.89455 0.81344 0.83609 0.89654 0.89553 0.90439 0.91297 0.92948 0.91542 0.93325 0.90125 0.90159 0.93398 0.92653 0.92914 0.90557 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 11.47 59.85 0.69 1.53 16 2 N -0.39 -5.07 4.01 -68.16 -0.27 -5.34 16 3 C 0.04 0.52 11.49 -17.22 -0.20 0.32 16 4 C -0.27 -3.78 10.72 -40.01 -0.43 -4.21 16 5 C 0.09 1.49 6.49 -82.40 -0.53 0.96 16 6 C -0.02 -0.38 5.08 -27.88 -0.14 -0.52 16 7 C -0.12 -2.54 3.97 -27.88 -0.11 -2.65 16 8 C 0.48 12.13 6.98 -10.98 -0.08 12.05 16 9 O -0.54 -15.75 13.63 5.55 0.08 -15.68 16 10 N -0.45 -11.11 2.40 -106.55 -0.26 -11.37 16 11 C -0.33 -8.98 6.98 -14.93 -0.10 -9.08 16 12 H 0.08 2.01 6.88 -52.49 -0.36 1.65 16 13 C 0.07 2.07 4.32 -17.47 -0.08 1.99 16 14 N -0.83 -24.77 11.71 55.50 0.65 -24.12 16 15 Si 0.90 22.15 29.60 -169.99 -5.03 17.12 16 16 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 19 C 0.13 2.62 3.26 -66.82 -0.22 2.40 16 20 C -0.12 -2.38 6.13 -25.03 -0.15 -2.53 16 21 C -0.12 -2.07 6.56 -24.69 -0.16 -2.23 16 22 C -0.12 -1.88 6.83 -25.07 -0.17 -2.06 16 23 C -0.13 -2.33 6.19 -25.61 -0.16 -2.48 16 24 N -0.29 -5.05 12.54 33.67 0.42 -4.62 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.17 1.23 8.06 -52.49 -0.42 0.80 16 29 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 30 H 0.08 1.58 8.08 -51.93 -0.42 1.16 16 31 H 0.09 1.81 8.10 -51.93 -0.42 1.39 16 32 H 0.08 1.60 7.82 -51.93 -0.41 1.19 16 33 H 0.07 1.28 7.76 -51.93 -0.40 0.88 16 34 H 0.26 7.55 8.32 -40.82 -0.34 7.21 16 35 H 0.07 1.25 5.83 -51.93 -0.30 0.95 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.86 8.02 -51.93 -0.42 1.44 16 38 H 0.08 1.62 7.16 -51.92 -0.37 1.25 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 42 H 0.08 1.51 6.82 -51.93 -0.35 1.16 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 347.74 15.07 5.24 5.24 Total: -1.00 -34.36 347.74 -7.84 -42.20 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -6.82 Total: 3.07 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: -1.85 Total: -6.50 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: 0.54 Total: -45.45 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.08 Total: -15.68 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -34.36 -7.84 -42.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340570646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.801 kcal (2) G-P(sol) polarization free energy of solvation -34.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds