Wall clock time and date at job start Tue Mar 31 2020 07:10:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34946 * 126.03263 * 2 1 4 4 C 1.35315 * 107.74606 * 179.75202 * 3 2 1 5 5 C 1.39878 * 107.91880 * 0.39650 * 4 3 2 6 6 C 1.50696 * 125.89951 * 179.86371 * 5 4 3 7 7 C 1.53005 * 109.46802 * 124.71487 * 6 5 4 8 8 C 1.50705 * 109.46756 * 180.02562 * 7 6 5 9 9 O 1.21287 * 120.00025 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99603 * 180.02562 * 8 7 6 11 11 C 1.37103 * 119.99533 * 179.97438 * 10 8 7 12 12 H 1.07995 * 119.99621 * 137.56849 * 11 10 8 13 13 C 1.38950 * 120.00204 * 317.55842 * 11 10 8 14 14 N 1.31413 * 119.99891 * 339.86894 * 13 11 10 15 15 Si 1.86799 * 119.99953 * 159.86412 * 13 11 10 16 16 H 1.48501 * 109.47004 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46888 * 120.00668 * 15 13 11 18 18 H 1.48508 * 109.46990 * 240.00502 * 15 13 11 19 19 C 1.46496 * 120.00466 * 359.97438 * 10 8 7 20 20 C 1.54258 * 110.03526 * 119.85684 * 19 10 8 21 21 C 1.54972 * 104.15800 * 95.75841 * 20 19 10 22 22 C 1.54889 * 102.77669 * 37.88848 * 21 20 19 23 23 C 1.53875 * 110.03179 * 237.07960 * 19 10 8 24 24 N 1.30841 * 108.19814 * 359.60018 * 5 4 3 25 25 H 1.09005 * 109.46427 * 269.97450 * 1 2 3 26 26 H 1.09003 * 109.47177 * 29.96938 * 1 2 3 27 27 H 1.08995 * 109.47184 * 149.97673 * 1 2 3 28 28 H 1.08001 * 126.13219 * 359.97438 * 3 2 1 29 29 H 1.08006 * 126.04481 * 180.27178 * 4 3 2 30 30 H 1.08994 * 109.47190 * 4.71708 * 6 5 4 31 31 H 1.09001 * 109.47183 * 244.71222 * 6 5 4 32 32 H 1.08994 * 109.47067 * 60.00146 * 7 6 5 33 33 H 1.08999 * 109.47196 * 299.99311 * 7 6 5 34 34 H 0.97003 * 120.00038 * 175.12060 * 14 13 11 35 35 H 1.09003 * 110.01268 * 358.46548 * 19 10 8 36 36 H 1.08996 * 110.48968 * 214.40334 * 20 19 10 37 37 H 1.09005 * 110.48977 * 337.05038 * 20 19 10 38 38 H 1.09008 * 110.71469 * 279.57266 * 21 20 19 39 39 H 1.08994 * 110.92513 * 156.30161 * 21 20 19 40 40 H 1.09000 * 110.48362 * 203.40691 * 22 21 20 41 41 H 1.08998 * 110.59561 * 80.81923 * 22 21 20 42 42 H 1.08994 * 110.03391 * 359.95156 * 23 19 10 43 43 H 1.09004 * 110.03103 * 121.38005 * 23 19 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0913 0.0000 4 6 3.5437 0.6667 0.0056 5 6 3.5347 -0.7320 -0.0001 6 6 4.7497 -1.6235 0.0003 7 6 4.6710 -2.5923 1.1819 8 6 5.8864 -3.4833 1.1827 9 8 6.7321 -3.3563 0.3225 10 7 6.0332 -4.4220 2.1386 11 6 7.1386 -5.2330 2.1390 12 1 7.6450 -5.4551 3.0666 13 6 7.6073 -5.7692 0.9459 14 7 6.8124 -5.8442 -0.0979 15 14 9.3674 -6.3834 0.8256 16 1 10.0498 -6.1885 2.1301 17 1 9.3651 -7.8274 0.4794 18 1 10.0861 -5.6228 -0.2281 19 6 5.0115 -4.5758 3.1772 20 6 4.4156 -5.9977 3.1259 21 6 5.2241 -6.7861 4.1873 22 6 5.4144 -5.7434 5.3169 23 6 5.6467 -4.4141 4.5694 24 7 2.2892 -1.1327 -0.0001 25 1 -0.3632 -0.0005 1.0278 26 1 -0.3634 0.8903 -0.5134 27 1 -0.3633 -0.8897 -0.5142 28 1 1.9281 2.1194 -0.0004 29 1 4.4211 1.2965 0.0112 30 1 5.6482 -1.0130 0.0902 31 1 4.7861 -2.1886 -0.9311 32 1 3.7726 -3.2027 1.0920 33 1 4.6348 -2.0272 2.1133 34 1 7.1586 -6.1524 -0.9500 35 1 4.2237 -3.8355 3.0381 36 1 3.3582 -5.9780 3.3894 37 1 4.5553 -6.4345 2.1370 38 1 6.1872 -7.0991 3.7842 39 1 4.6595 -7.6463 4.5468 40 1 6.2824 -5.9953 5.9261 41 1 4.5197 -5.6816 5.9363 42 1 6.7152 -4.2221 4.4723 43 1 5.1670 -3.5954 5.1059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340570646.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:10:25 Heat of formation + Delta-G solvation = 22.292890 kcal Electronic energy + Delta-G solvation = -23775.674288 eV Core-core repulsion = 20435.777771 eV Total energy + Delta-G solvation = -3339.896517 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.05693 -40.60879 -38.37127 -35.59709 -34.85829 -33.51866 -32.45539 -30.86364 -29.38367 -28.66084 -28.06720 -26.44222 -24.63949 -22.00939 -21.73925 -21.17750 -20.84666 -20.16595 -18.28535 -17.71524 -17.41017 -16.82101 -16.43753 -16.07045 -15.97706 -15.77323 -15.24168 -14.82785 -14.64925 -14.35806 -14.27022 -13.88698 -13.45468 -13.36725 -13.22395 -12.92718 -12.82448 -12.76119 -12.57551 -12.35056 -12.19348 -12.05918 -11.97574 -11.80488 -11.74319 -11.45023 -11.36935 -11.16833 -10.68607 -10.18057 -9.89602 -9.43509 -9.00847 -8.09420 -5.84544 1.00015 1.38311 1.45136 1.52528 1.75281 1.85430 2.35190 2.53708 3.19504 3.34973 3.64281 3.88189 3.92610 4.00730 4.10477 4.26288 4.27520 4.29904 4.48608 4.49227 4.59444 4.72105 4.72705 4.76106 4.79205 4.86579 4.92453 4.93183 4.98102 5.03595 5.16205 5.18223 5.22546 5.25517 5.30113 5.50175 5.57552 5.62777 5.71375 5.75274 6.26412 6.32061 6.82354 7.14692 7.32755 7.81989 8.46681 8.97915 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.016461 B = 0.004665 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.545616 B = 6001.083906 C = 7111.399344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.383 5.383 3 C 0.068 3.932 4 C -0.291 4.291 5 C 0.065 3.935 6 C -0.009 4.009 7 C -0.103 4.103 8 C 0.460 3.540 9 O -0.587 6.587 10 N -0.459 5.459 11 C -0.330 4.330 12 H 0.079 0.921 13 C 0.022 3.978 14 N -0.871 5.871 15 Si 0.953 3.047 16 H -0.257 1.257 17 H -0.280 1.280 18 H -0.297 1.297 19 C 0.119 3.881 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.108 4.108 23 C -0.126 4.126 24 N -0.337 5.337 25 H 0.087 0.913 26 H 0.122 0.878 27 H 0.081 0.919 28 H 0.222 0.778 29 H 0.159 0.841 30 H 0.082 0.918 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.253 0.747 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.050 0.950 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.560 11.685 6.960 19.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.079 4.079 4 C -0.321 4.321 5 C -0.100 4.100 6 C -0.049 4.049 7 C -0.144 4.144 8 C 0.249 3.751 9 O -0.469 6.469 10 N -0.181 5.181 11 C -0.458 4.458 12 H 0.097 0.903 13 C -0.184 4.184 14 N -0.507 5.507 15 Si 0.779 3.221 16 H -0.181 1.181 17 H -0.207 1.207 18 H -0.224 1.224 19 C 0.015 3.985 20 C -0.158 4.158 21 C -0.153 4.153 22 C -0.145 4.145 23 C -0.165 4.165 24 N -0.161 5.161 25 H 0.105 0.895 26 H 0.140 0.860 27 H 0.100 0.900 28 H 0.238 0.762 29 H 0.177 0.823 30 H 0.101 0.899 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.069 0.931 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.145 10.628 6.389 18.811 hybrid contribution 1.580 0.028 -0.816 1.778 sum -12.565 10.656 5.573 17.392 Atomic orbital electron populations 1.22194 0.71981 1.05828 1.04617 1.48939 1.07983 1.03394 1.56236 1.23177 0.90101 0.94861 0.99740 1.21738 0.98896 0.93371 1.18058 1.22339 0.92804 0.95153 0.99704 1.19491 0.92632 0.94908 0.97843 1.21327 0.96485 0.96954 0.99676 1.20743 0.88521 0.82018 0.83809 1.90464 1.46265 1.71683 1.38514 1.43635 1.19410 1.29326 1.25695 1.19045 1.05983 1.26508 0.94256 0.90301 1.25863 1.00996 0.95157 0.96339 1.70026 1.35508 1.43780 1.01418 0.85519 0.81232 0.77069 0.78280 1.18064 1.20652 1.22445 1.21988 0.90299 0.97162 0.89039 1.22518 0.98886 0.95653 0.98764 1.22405 0.99621 0.97808 0.95439 1.22247 1.01956 0.93559 0.96755 1.22448 1.00688 0.98863 0.94472 1.77285 1.02075 1.09821 1.26926 0.89496 0.86010 0.90021 0.76177 0.82308 0.89893 0.92873 0.90864 0.89037 0.93799 0.90122 0.90211 0.94833 0.93479 0.90807 0.91618 0.89653 0.93072 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 11.47 127.77 1.47 2.67 16 2 N -0.38 -9.08 4.01 -369.55 -1.48 -10.57 16 3 C 0.07 1.35 11.49 83.54 0.96 2.31 16 4 C -0.29 -7.76 10.72 21.99 0.24 -7.52 16 5 C 0.06 2.23 6.49 43.10 0.28 2.51 16 6 C -0.01 -0.36 5.08 29.85 0.15 -0.21 16 7 C -0.10 -4.34 3.97 29.85 0.12 -4.22 16 8 C 0.46 24.39 6.98 87.66 0.61 25.01 16 9 O -0.59 -36.30 13.63 -3.05 -0.04 -36.34 16 10 N -0.46 -23.33 2.40 -609.40 -1.46 -24.80 16 11 C -0.33 -18.30 6.98 84.04 0.59 -17.71 16 12 H 0.08 4.24 6.88 -2.91 -0.02 4.22 16 13 C 0.02 1.26 4.32 84.93 0.37 1.63 16 14 N -0.87 -54.72 11.71 21.66 0.25 -54.47 16 15 Si 0.95 47.08 29.60 68.60 2.03 49.11 16 16 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 17 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 18 H -0.30 -15.31 7.11 99.48 0.71 -14.61 16 19 C 0.12 4.75 3.26 45.71 0.15 4.89 16 20 C -0.12 -4.60 6.13 31.70 0.19 -4.40 16 21 C -0.12 -3.92 6.56 31.91 0.21 -3.71 16 22 C -0.11 -3.07 6.83 31.67 0.22 -2.85 16 23 C -0.13 -4.22 6.19 31.32 0.19 -4.03 16 24 N -0.34 -11.48 12.54 -47.38 -0.59 -12.07 16 25 H 0.09 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.22 1.91 8.06 -2.91 -0.02 1.88 16 29 H 0.16 3.62 8.06 -2.91 -0.02 3.59 16 30 H 0.08 3.26 8.08 -2.39 -0.02 3.24 16 31 H 0.05 2.42 8.10 -2.39 -0.02 2.40 16 32 H 0.07 3.12 7.82 -2.39 -0.02 3.10 16 33 H 0.09 3.38 7.76 -2.39 -0.02 3.36 16 34 H 0.25 15.55 8.32 -92.71 -0.77 14.78 16 35 H 0.08 2.94 5.83 -2.39 -0.01 2.93 16 36 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 37 H 0.03 1.59 8.02 -2.38 -0.02 1.57 16 38 H 0.05 1.90 7.16 -2.38 -0.02 1.88 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 1.97 6.82 -2.39 -0.02 1.95 16 43 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -80.55 347.74 5.43 -75.13 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.99 Total: 19.66 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: 5.74 Total: -5.64 kcal Atomic # 7 Polarization: -98.62 SS G_CDS: -3.29 Total: -101.91 kcal Atomic # 8 Polarization: -36.30 SS G_CDS: -0.04 Total: -36.34 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 2.03 Total: 49.11 kcal Total: -80.55 5.43 -75.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340570646.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.418 kcal (2) G-P(sol) polarization free energy of solvation -80.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds