Wall clock time and date at job start Tue Mar 31 2020 07:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99736 * 2 1 4 4 C 1.53001 * 109.46769 * 179.97438 * 3 2 1 5 5 C 1.47196 * 109.52148 * 60.00340 * 4 3 2 6 6 N 3.58154 * 143.47884 * 267.06167 * 2 1 3 7 7 C 1.53119 * 109.52756 * 299.87775 * 4 3 2 8 8 C 1.53042 * 109.27968 * 182.50511 * 7 4 3 9 9 N 1.46852 * 109.57506 * 59.07778 * 8 7 4 10 10 C 1.46897 * 110.99662 * 174.19230 * 9 8 7 11 11 C 1.53001 * 109.47036 * 190.37449 * 10 9 8 12 12 H 1.09000 * 109.47195 * 303.66568 * 11 10 9 13 13 C 1.47203 * 109.47059 * 63.65956 * 11 10 9 14 14 N 7.95122 * 134.96023 * 44.61329 * 2 1 3 15 15 C 1.52994 * 109.47432 * 183.66105 * 11 10 9 16 16 C 1.50702 * 109.47541 * 175.00177 * 15 11 10 17 17 H 1.08003 * 119.99502 * 359.97438 * 16 15 11 18 18 C 1.37872 * 120.00156 * 179.97438 * 16 15 11 19 19 N 1.31512 * 120.00315 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47076 * 60.00071 * 20 18 16 22 22 H 1.48502 * 109.47252 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46826 * 300.00370 * 20 18 16 24 24 C 1.46843 * 111.19859 * 298.29567 * 9 8 7 25 25 C 1.53039 * 109.52657 * 61.74377 * 24 9 8 26 26 H 1.09011 * 109.46710 * 59.99849 * 1 2 3 27 27 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47179 * 299.99973 * 1 2 3 29 29 H 1.09003 * 109.46857 * 60.00496 * 3 2 1 30 30 H 1.08999 * 109.47581 * 299.99859 * 3 2 1 31 31 H 1.09008 * 109.49776 * 302.38262 * 7 4 3 32 32 H 1.08997 * 109.50272 * 62.49467 * 7 4 3 33 33 H 1.09003 * 109.40546 * 299.06836 * 8 7 4 34 34 H 1.08998 * 109.46208 * 179.13143 * 8 7 4 35 35 H 1.09001 * 109.47639 * 310.37586 * 10 9 8 36 36 H 1.08994 * 109.46851 * 70.38195 * 10 9 8 37 37 H 1.09001 * 109.47169 * 295.00130 * 15 11 10 38 38 H 1.08996 * 109.47434 * 54.99854 * 15 11 10 39 39 H 0.96994 * 120.00613 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.46231 * 301.71947 * 24 9 8 41 41 H 1.09003 * 109.45743 * 181.75390 * 24 9 8 42 42 H 1.09002 * 109.50235 * 180.87910 * 25 24 9 43 43 H 1.08998 * 109.50312 * 60.75499 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9715 0.4542 -1.2006 6 7 4.3073 -0.1093 -2.1286 7 6 3.9884 0.4278 1.2523 8 6 5.5172 0.3647 1.2790 9 7 6.0659 1.7269 1.2818 10 6 7.5256 1.7060 1.4460 11 6 8.0302 3.1274 1.7029 12 1 7.7124 3.7785 0.8886 13 6 7.4748 3.6232 2.9728 14 7 7.0475 4.0051 3.9514 15 6 9.5580 3.1195 1.7831 16 6 10.0616 4.5339 1.9133 17 1 9.3619 5.3562 1.9361 18 6 11.4156 4.7780 2.0033 19 7 12.2677 3.7767 1.9750 20 14 12.0398 6.5313 2.1640 21 1 11.4821 7.1443 3.3961 22 1 13.5228 6.5236 2.2419 23 1 11.6108 7.3198 0.9809 24 6 5.6833 2.4559 0.0660 25 6 4.1595 2.5829 0.0039 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8900 31 1 3.6309 0.9478 2.1412 32 1 3.5817 -0.5833 1.2332 33 1 5.8732 -0.1684 0.3974 34 1 5.8434 -0.1602 2.1769 35 1 7.7872 1.0692 2.2911 36 1 7.9875 1.3149 0.5396 37 1 9.8733 2.5402 2.6510 38 1 9.9671 2.6700 0.8783 39 1 13.2202 3.9485 2.0379 40 1 6.0386 1.9131 -0.8099 41 1 6.1302 3.4500 0.0829 42 1 3.8751 3.1105 -0.9066 43 1 3.8049 3.1377 0.8726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341979361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:07 Heat of formation + Delta-G solvation = -1.715228 kcal Electronic energy + Delta-G solvation = -23123.220011 eV Core-core repulsion = 19782.282423 eV Total energy + Delta-G solvation = -3340.937587 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.26871 -38.14741 -36.87569 -35.82276 -34.34587 -33.36040 -31.62212 -31.05272 -28.56006 -26.83379 -25.77458 -23.71641 -23.46128 -22.57855 -21.63636 -20.95600 -17.16888 -16.72242 -16.67855 -16.50138 -16.22252 -15.86483 -15.12157 -14.84327 -14.59755 -14.42129 -14.22027 -13.77080 -13.65183 -13.23498 -12.87176 -12.61856 -12.52296 -12.36608 -12.29127 -12.13345 -11.98854 -11.86997 -11.59296 -11.46000 -11.32410 -11.17459 -11.01839 -10.88243 -10.67842 -10.57161 -10.50596 -10.11389 -10.06786 -9.54018 -9.23745 -8.45917 -8.26253 -6.09770 -4.13226 2.64019 2.68749 3.28862 3.30723 3.35273 3.38500 3.61467 3.73899 3.83772 3.94769 4.38018 4.40809 4.44128 4.59808 4.86222 4.90957 4.92985 5.00015 5.03872 5.08498 5.20889 5.27953 5.28414 5.30797 5.39362 5.43514 5.53790 5.64219 5.71967 5.82951 5.85921 5.90360 5.99865 6.06347 6.35632 6.49048 6.68529 7.09717 7.11643 7.42418 7.47231 7.52251 7.84960 8.22497 8.58961 8.91317 9.52288 11.01104 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030408 B = 0.003130 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.578153 B = 8942.917033 C = 9154.659763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.072 3.928 4 C 0.041 3.959 5 C 0.223 3.777 6 N -0.434 5.434 7 C -0.099 4.099 8 C 0.051 3.949 9 N -0.538 5.538 10 C 0.062 3.938 11 C 0.010 3.990 12 H 0.100 0.900 13 C 0.258 3.742 14 N -0.479 5.479 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.046 3.954 25 C -0.103 4.103 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.045 0.955 29 H 0.074 0.926 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.263 0.737 40 H 0.036 0.964 41 H 0.093 0.907 42 H 0.078 0.922 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.394 -6.539 -4.740 22.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.005 4.005 4 C 0.037 3.963 5 C -0.095 4.095 6 N -0.108 5.108 7 C -0.138 4.138 8 C -0.077 4.077 9 N -0.262 5.262 10 C -0.066 4.066 11 C -0.012 4.012 12 H 0.117 0.883 13 C -0.059 4.059 14 N -0.156 5.156 15 C -0.007 4.007 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.082 4.082 25 C -0.142 4.142 26 H 0.059 0.941 27 H 0.105 0.895 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.073 0.927 40 H 0.054 0.946 41 H 0.112 0.888 42 H 0.097 0.903 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.425 -6.794 -4.279 22.880 hybrid contribution 0.671 0.810 -0.686 1.256 sum -20.754 -5.984 -4.965 22.162 Atomic orbital electron populations 1.22757 0.80572 1.02973 1.00138 1.87906 1.20004 1.27275 1.95470 1.22579 0.90587 0.85504 1.01879 1.18499 0.94071 0.95449 0.88276 1.28790 0.93064 0.93580 0.94051 1.81206 1.08941 1.09224 1.11463 1.21658 0.95538 1.01142 0.95435 1.22134 0.94292 0.89878 1.01430 1.62011 1.11892 1.15193 1.37148 1.22236 0.85501 0.97111 1.01774 1.19247 0.99486 0.94210 0.88268 0.88268 1.28721 0.90844 0.92078 0.94267 1.80900 1.12159 1.10188 1.12348 1.19167 0.84508 0.98270 0.98801 1.21093 0.91935 0.92196 1.51265 0.92542 1.24950 0.96980 0.97087 0.94921 1.69922 1.02453 1.30743 1.49901 0.86659 0.77664 0.84946 0.78837 1.20196 1.21208 1.20069 1.22201 0.94483 1.00464 0.91031 1.21691 0.95723 0.92694 1.04104 0.94056 0.89528 0.93673 0.90792 0.92351 0.88924 0.89902 0.94924 0.89763 0.89944 0.92833 0.95539 0.94520 0.92725 0.94580 0.88835 0.90326 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.35 9.70 -35.23 -0.34 -3.69 16 3 C 0.07 0.51 4.79 37.16 0.18 0.69 16 4 C 0.04 0.36 0.56 -157.17 -0.09 0.27 16 5 C 0.22 2.63 11.24 -20.75 -0.23 2.40 16 6 N -0.43 -6.27 18.54 42.17 0.78 -5.49 16 7 C -0.10 -0.88 4.68 -26.65 -0.12 -1.00 16 8 C 0.05 0.54 5.25 -3.83 -0.02 0.52 16 9 N -0.54 -6.59 4.32 -234.67 -1.01 -7.61 16 10 C 0.06 0.89 4.34 -3.82 -0.02 0.87 16 11 C 0.01 0.17 2.12 -93.41 -0.20 -0.02 16 12 H 0.10 1.63 6.29 -51.93 -0.33 1.30 16 13 C 0.26 5.14 13.63 -20.82 -0.28 4.85 16 14 N -0.48 -10.38 18.52 42.08 0.78 -9.60 16 15 C 0.03 0.71 4.42 -27.88 -0.12 0.58 16 16 C -0.53 -13.82 8.60 -34.44 -0.30 -14.12 16 17 H 0.06 1.47 7.59 -52.48 -0.40 1.07 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.42 13.29 55.43 0.74 -24.69 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 24 C 0.05 0.51 5.09 -3.84 -0.02 0.49 16 25 C -0.10 -0.86 4.86 -26.65 -0.13 -0.99 16 26 H 0.04 0.21 8.14 -51.92 -0.42 -0.22 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.09 0.76 8.14 -51.92 -0.42 0.34 16 32 H 0.08 0.73 7.77 -51.93 -0.40 0.33 16 33 H 0.03 0.38 7.32 -51.93 -0.38 0.00 16 34 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 35 H 0.08 1.18 7.98 -51.93 -0.41 0.77 16 36 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 40 H 0.04 0.43 7.32 -51.93 -0.38 0.05 16 41 H 0.09 1.05 6.16 -51.93 -0.32 0.73 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -32.04 357.56 -5.85 -37.89 By element: Atomic # 1 Polarization: 1.07 SS G_CDS: -6.82 Total: -5.75 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -0.34 Total: -2.55 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 1.28 Total: -47.39 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.34 Total: -3.69 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.04 -5.85 -37.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341979361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.174 kcal (2) G-P(sol) polarization free energy of solvation -32.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds