Wall clock time and date at job start Tue Mar 31 2020 07:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99736 * 2 1 4 4 C 1.53001 * 109.46769 * 179.97438 * 3 2 1 5 5 C 1.47196 * 109.52148 * 60.00340 * 4 3 2 6 6 N 3.58154 * 143.47884 * 267.06167 * 2 1 3 7 7 C 1.53119 * 109.52756 * 299.87775 * 4 3 2 8 8 C 1.53042 * 109.27968 * 182.50511 * 7 4 3 9 9 N 1.46852 * 109.57506 * 59.07778 * 8 7 4 10 10 C 1.46897 * 110.99662 * 174.19230 * 9 8 7 11 11 C 1.53001 * 109.47036 * 190.37449 * 10 9 8 12 12 H 1.09000 * 109.47195 * 303.66568 * 11 10 9 13 13 C 1.47203 * 109.47059 * 63.65956 * 11 10 9 14 14 N 7.95122 * 134.96023 * 44.61329 * 2 1 3 15 15 C 1.52994 * 109.47432 * 183.66105 * 11 10 9 16 16 C 1.50702 * 109.47541 * 175.00177 * 15 11 10 17 17 H 1.08003 * 119.99502 * 359.97438 * 16 15 11 18 18 C 1.37872 * 120.00156 * 179.97438 * 16 15 11 19 19 N 1.31512 * 120.00315 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99955 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47076 * 60.00071 * 20 18 16 22 22 H 1.48502 * 109.47252 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46826 * 300.00370 * 20 18 16 24 24 C 1.46843 * 111.19859 * 298.29567 * 9 8 7 25 25 C 1.53039 * 109.52657 * 61.74377 * 24 9 8 26 26 H 1.09011 * 109.46710 * 59.99849 * 1 2 3 27 27 H 1.09000 * 109.47312 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47179 * 299.99973 * 1 2 3 29 29 H 1.09003 * 109.46857 * 60.00496 * 3 2 1 30 30 H 1.08999 * 109.47581 * 299.99859 * 3 2 1 31 31 H 1.09008 * 109.49776 * 302.38262 * 7 4 3 32 32 H 1.08997 * 109.50272 * 62.49467 * 7 4 3 33 33 H 1.09003 * 109.40546 * 299.06836 * 8 7 4 34 34 H 1.08998 * 109.46208 * 179.13143 * 8 7 4 35 35 H 1.09001 * 109.47639 * 310.37586 * 10 9 8 36 36 H 1.08994 * 109.46851 * 70.38195 * 10 9 8 37 37 H 1.09001 * 109.47169 * 295.00130 * 15 11 10 38 38 H 1.08996 * 109.47434 * 54.99854 * 15 11 10 39 39 H 0.96994 * 120.00613 * 179.97438 * 19 18 16 40 40 H 1.08999 * 109.46231 * 301.71947 * 24 9 8 41 41 H 1.09003 * 109.45743 * 181.75390 * 24 9 8 42 42 H 1.09002 * 109.50235 * 180.87910 * 25 24 9 43 43 H 1.08998 * 109.50312 * 60.75499 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9715 0.4542 -1.2006 6 7 4.3073 -0.1093 -2.1286 7 6 3.9884 0.4278 1.2523 8 6 5.5172 0.3647 1.2790 9 7 6.0659 1.7269 1.2818 10 6 7.5256 1.7060 1.4460 11 6 8.0302 3.1274 1.7029 12 1 7.7124 3.7785 0.8886 13 6 7.4748 3.6232 2.9728 14 7 7.0475 4.0051 3.9514 15 6 9.5580 3.1195 1.7831 16 6 10.0616 4.5339 1.9133 17 1 9.3619 5.3562 1.9361 18 6 11.4156 4.7780 2.0033 19 7 12.2677 3.7767 1.9750 20 14 12.0398 6.5313 2.1640 21 1 11.4821 7.1443 3.3961 22 1 13.5228 6.5236 2.2419 23 1 11.6108 7.3198 0.9809 24 6 5.6833 2.4559 0.0660 25 6 4.1595 2.5829 0.0039 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8900 31 1 3.6309 0.9478 2.1412 32 1 3.5817 -0.5833 1.2332 33 1 5.8732 -0.1684 0.3974 34 1 5.8434 -0.1602 2.1769 35 1 7.7872 1.0692 2.2911 36 1 7.9875 1.3149 0.5396 37 1 9.8733 2.5402 2.6510 38 1 9.9671 2.6700 0.8783 39 1 13.2202 3.9485 2.0379 40 1 6.0386 1.9131 -0.8099 41 1 6.1302 3.4500 0.0829 42 1 3.8751 3.1105 -0.9066 43 1 3.8049 3.1377 0.8726 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341979361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:07 Heat of formation + Delta-G solvation = -22.032564 kcal Electronic energy + Delta-G solvation = -23124.101036 eV Core-core repulsion = 19782.282423 eV Total energy + Delta-G solvation = -3341.818613 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07116 -38.99948 -37.97371 -37.02492 -35.69896 -34.94342 -33.14602 -31.89092 -29.58283 -27.92268 -26.73709 -24.71091 -24.31261 -23.79349 -23.15211 -21.85227 -18.54278 -18.18217 -17.74573 -17.23538 -17.08640 -16.59588 -16.42685 -15.94993 -15.84702 -15.35147 -15.20905 -14.88674 -14.53607 -14.38853 -14.27148 -14.05234 -13.71415 -13.49669 -13.29651 -13.17006 -13.07666 -12.97920 -12.85721 -12.78421 -12.44710 -12.39185 -12.27706 -12.13435 -12.08908 -11.91815 -11.49010 -11.41722 -11.22308 -11.00197 -10.56944 -10.53435 -9.26781 -8.17803 -6.26319 1.42740 1.44274 1.51241 1.75560 1.79965 2.15126 2.22370 2.42887 2.72171 2.83899 2.98379 3.17907 3.39825 3.68992 3.74152 3.92899 4.08191 4.28739 4.31800 4.39532 4.44947 4.52128 4.55982 4.60622 4.64916 4.69512 4.76779 4.78310 4.83017 4.92205 4.95572 5.00254 5.05485 5.11982 5.22354 5.28143 5.48154 5.62838 5.80646 6.03851 6.17696 6.22211 6.23184 6.59066 6.85908 6.99975 7.42450 8.93049 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030408 B = 0.003130 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.578153 B = 8942.917033 C = 9154.659763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.414 6.414 3 C 0.072 3.928 4 C 0.042 3.958 5 C 0.243 3.757 6 N -0.489 5.489 7 C -0.092 4.092 8 C 0.050 3.950 9 N -0.538 5.538 10 C 0.071 3.929 11 C 0.023 3.977 12 H 0.118 0.882 13 C 0.269 3.731 14 N -0.507 5.507 15 C 0.036 3.964 16 C -0.537 4.537 17 H 0.057 0.943 18 C 0.010 3.990 19 N -0.926 5.926 20 Si 0.949 3.051 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.262 1.262 24 C 0.041 3.959 25 C -0.097 4.097 26 H 0.047 0.953 27 H 0.089 0.911 28 H 0.060 0.940 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.019 0.981 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.001 0.999 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.024 0.976 41 H 0.092 0.908 42 H 0.097 0.903 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.343 -5.459 -4.665 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C -0.005 4.005 4 C 0.039 3.961 5 C -0.074 4.074 6 N -0.164 5.164 7 C -0.131 4.131 8 C -0.077 4.077 9 N -0.263 5.263 10 C -0.058 4.058 11 C 0.001 3.999 12 H 0.135 0.865 13 C -0.047 4.047 14 N -0.185 5.185 15 C -0.002 4.002 16 C -0.575 4.575 17 H 0.076 0.924 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.774 3.226 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.187 1.187 24 C -0.087 4.087 25 C -0.136 4.136 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.078 0.922 29 H 0.118 0.882 30 H 0.087 0.913 31 H 0.126 0.874 32 H 0.102 0.898 33 H 0.037 0.963 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.020 0.980 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.042 0.958 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -23.398 -5.711 -4.213 24.451 hybrid contribution 1.262 0.442 -0.695 1.507 sum -22.136 -5.269 -4.908 23.278 Atomic orbital electron populations 1.22899 0.79211 1.03587 1.01166 1.87865 1.21578 1.28253 1.95716 1.22664 0.88809 0.85352 1.03665 1.18721 0.95669 0.95156 0.86599 1.29437 0.91530 0.92512 0.93920 1.81216 1.10853 1.11010 1.13353 1.21625 0.93782 1.01597 0.96077 1.22181 0.95721 0.88839 1.00993 1.62010 1.10127 1.16197 1.37946 1.22041 0.87293 0.94595 1.01907 1.19123 0.96078 0.96752 0.87945 0.86453 1.29031 0.90213 0.91229 0.94246 1.80903 1.13120 1.11334 1.13109 1.18987 0.87936 0.96130 0.97180 1.21532 0.92103 0.93777 1.50127 0.92429 1.25736 0.97529 1.00630 0.95004 1.70030 1.02639 1.32590 1.51305 0.85745 0.77107 0.80774 0.78948 1.20413 1.20992 1.18708 1.22303 0.96639 0.99858 0.89908 1.21702 0.93410 0.92621 1.05854 0.93467 0.89275 0.92152 0.88232 0.91308 0.87444 0.89793 0.96269 0.89432 0.90132 0.92482 0.98039 0.95283 0.92777 0.95780 0.88983 0.88491 0.86808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -6.23 9.70 -148.98 -1.44 -7.67 16 3 C 0.07 0.79 4.79 71.98 0.34 1.14 16 4 C 0.04 0.63 0.56 -53.91 -0.03 0.60 16 5 C 0.24 5.47 11.24 89.44 1.01 6.47 16 6 N -0.49 -14.10 18.54 20.01 0.37 -13.73 16 7 C -0.09 -1.43 4.68 30.65 0.14 -1.29 16 8 C 0.05 1.01 5.25 86.33 0.45 1.47 16 9 N -0.54 -12.34 4.32 -896.35 -3.87 -16.21 16 10 C 0.07 1.97 4.34 86.30 0.37 2.34 16 11 C 0.02 0.79 2.12 -12.60 -0.03 0.76 16 12 H 0.12 3.67 6.29 -2.39 -0.02 3.65 16 13 C 0.27 10.43 13.63 89.46 1.22 11.65 16 14 N -0.51 -21.44 18.52 19.98 0.37 -21.07 16 15 C 0.04 1.67 4.42 29.85 0.13 1.80 16 16 C -0.54 -28.07 8.60 25.60 0.22 -27.85 16 17 H 0.06 2.94 7.59 -2.91 -0.02 2.91 16 18 C 0.01 0.53 5.46 84.65 0.46 1.00 16 19 N -0.93 -53.30 13.29 21.45 0.28 -53.02 16 20 Si 0.95 43.03 29.54 68.60 2.03 45.06 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 24 C 0.04 0.82 5.09 86.33 0.44 1.26 16 25 C -0.10 -1.33 4.86 30.65 0.15 -1.18 16 26 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 27 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.08 1.33 7.77 -2.39 -0.02 1.31 16 33 H 0.02 0.44 7.32 -2.39 -0.02 0.42 16 34 H 0.09 1.70 8.01 -2.39 -0.02 1.68 16 35 H 0.08 2.27 7.98 -2.39 -0.02 2.25 16 36 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 37 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 40 H 0.02 0.55 7.32 -2.39 -0.02 0.53 16 41 H 0.09 1.87 6.16 -2.39 -0.01 1.86 16 42 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 43 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -68.89 357.56 4.86 -64.02 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: 0.99 Total: 2.94 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: 6.13 Total: -0.33 kcal Atomic # 7 Polarization: -101.18 SS G_CDS: -2.85 Total: -104.02 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -1.44 Total: -7.67 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -68.89 4.86 -64.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341979361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.992 kcal (2) G-P(sol) polarization free energy of solvation -68.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds