Wall clock time and date at job start Tue Mar 31 2020 07:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99495 * 2 1 4 4 C 1.53001 * 109.46758 * 180.02562 * 3 2 1 5 5 C 1.47205 * 109.52275 * 300.12145 * 4 3 2 6 6 N 3.57988 * 143.50741 * 93.06552 * 2 1 3 7 7 C 1.53118 * 109.52139 * 180.02562 * 4 3 2 8 8 C 1.53040 * 109.27832 * 182.44103 * 7 4 3 9 9 N 1.46836 * 109.52612 * 59.17585 * 8 7 4 10 10 C 1.46900 * 111.00343 * 174.16281 * 9 8 7 11 11 C 1.53000 * 109.47017 * 293.83791 * 10 9 8 12 12 H 1.09000 * 109.47019 * 56.33921 * 11 10 9 13 13 C 1.47201 * 109.47192 * 296.34045 * 11 10 9 14 14 N 7.95282 * 134.95472 * 315.50387 * 2 1 3 15 15 C 1.52996 * 109.47342 * 176.33914 * 11 10 9 16 16 C 1.50696 * 109.47302 * 184.99910 * 15 11 10 17 17 H 1.08003 * 120.00282 * 0.02562 * 16 15 11 18 18 C 1.37883 * 120.00050 * 179.72747 * 16 15 11 19 19 N 1.31508 * 120.00094 * 0.27564 * 18 16 15 20 20 Si 1.86797 * 119.99799 * 180.27761 * 18 16 15 21 21 H 1.48501 * 109.47362 * 89.99934 * 20 18 16 22 22 H 1.48504 * 109.46761 * 209.99856 * 20 18 16 23 23 H 1.48494 * 109.47503 * 329.99411 * 20 18 16 24 24 C 1.46848 * 111.19980 * 298.25834 * 9 8 7 25 25 C 1.53043 * 109.52126 * 61.74163 * 24 9 8 26 26 H 1.09005 * 109.46994 * 299.99423 * 1 2 3 27 27 H 1.08995 * 109.47400 * 59.99998 * 1 2 3 28 28 H 1.09009 * 109.46816 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47241 * 59.99954 * 3 2 1 30 30 H 1.08999 * 109.46902 * 300.00014 * 3 2 1 31 31 H 1.08999 * 109.50585 * 62.49181 * 7 4 3 32 32 H 1.09003 * 109.49952 * 302.37828 * 7 4 3 33 33 H 1.08997 * 109.45816 * 299.15345 * 8 7 4 34 34 H 1.09003 * 109.46440 * 179.19516 * 8 7 4 35 35 H 1.08994 * 109.47553 * 173.83760 * 10 9 8 36 36 H 1.08997 * 109.47109 * 53.83342 * 10 9 8 37 37 H 1.09001 * 109.47144 * 65.00141 * 15 11 10 38 38 H 1.08997 * 109.47473 * 305.00307 * 15 11 10 39 39 H 0.96998 * 120.00491 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.46803 * 181.76094 * 24 9 8 41 41 H 1.09003 * 109.46427 * 301.72884 * 24 9 8 42 42 H 1.09004 * 109.49958 * 180.88503 * 25 24 9 43 43 H 1.08996 * 109.50235 * 60.76687 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9713 0.4517 1.1991 6 7 4.3070 -0.1139 2.1260 7 6 4.1593 2.5831 0.0000 8 6 5.6832 2.4564 -0.0622 9 7 6.0661 1.7305 -1.2798 10 6 7.5258 1.7102 -1.4437 11 6 8.0304 3.1323 -1.6968 12 1 7.7124 3.7812 -0.8808 13 6 7.4752 3.6314 -2.9655 14 7 7.0480 4.0144 -3.9444 15 6 9.5582 3.1247 -1.7766 16 6 10.0617 4.5394 -1.9030 17 1 9.3620 5.3618 -1.9238 18 6 11.4161 4.7843 -1.9858 19 7 12.2682 3.7830 -1.9600 20 14 12.0405 6.5386 -2.1347 21 1 12.2743 7.0975 -0.7789 22 1 13.3131 6.5477 -2.9001 23 1 11.0308 7.3650 -2.8435 24 6 5.5175 0.3684 -1.2807 25 6 3.9886 0.4328 -1.2550 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.6885 1.8465 0.8900 30 1 1.6884 1.8464 -0.8900 31 1 3.8746 3.1083 0.9117 32 1 3.8048 3.1401 -0.8673 33 1 6.0382 1.9113 0.8124 34 1 6.1301 3.4505 -0.0763 35 1 7.7876 1.0757 -2.2904 36 1 7.9876 1.3167 -0.5382 37 1 9.8738 2.5477 -2.6460 38 1 9.9671 2.6728 -0.8729 39 1 13.2210 3.9553 -2.0179 40 1 5.8439 -0.1541 -2.1799 41 1 5.8733 -0.1670 -0.4004 42 1 3.5821 -0.5785 -1.2398 43 1 3.6315 0.9559 -2.1420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341979362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:11 Heat of formation + Delta-G solvation = -1.814320 kcal Electronic energy + Delta-G solvation = -23123.242034 eV Core-core repulsion = 19782.300150 eV Total energy + Delta-G solvation = -3340.941884 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.26945 -38.14718 -36.87305 -35.81877 -34.34121 -33.36062 -31.62237 -31.05167 -28.56039 -26.83426 -25.77457 -23.71728 -23.46004 -22.58005 -21.63751 -20.95762 -17.16932 -16.72297 -16.67955 -16.50143 -16.22348 -15.86554 -15.12241 -14.84435 -14.59514 -14.42036 -14.21944 -13.77051 -13.65099 -13.23442 -12.86941 -12.61916 -12.52474 -12.36586 -12.29177 -12.13574 -11.98793 -11.86936 -11.59298 -11.45837 -11.32316 -11.17592 -11.03172 -10.87414 -10.68337 -10.57362 -10.48802 -10.11638 -10.06883 -9.54205 -9.22569 -8.46417 -8.26312 -6.10066 -4.13342 2.63994 2.68760 3.28691 3.28829 3.35839 3.40067 3.61494 3.73697 3.83567 3.94738 4.37950 4.40744 4.44114 4.59823 4.86253 4.90951 4.92996 5.00023 5.03874 5.08517 5.20858 5.27880 5.28290 5.30759 5.39363 5.43485 5.53658 5.64191 5.71922 5.82949 5.85888 5.90321 5.99846 6.06311 6.35593 6.48970 6.68505 7.09683 7.11634 7.42408 7.47245 7.52190 7.84947 8.22391 8.59040 8.91448 9.52195 11.00857 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030377 B = 0.003131 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.520859 B = 8942.041352 C = 9152.963024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.072 3.928 4 C 0.041 3.959 5 C 0.223 3.777 6 N -0.434 5.434 7 C -0.103 4.103 8 C 0.046 3.954 9 N -0.538 5.538 10 C 0.062 3.938 11 C 0.010 3.990 12 H 0.100 0.900 13 C 0.258 3.742 14 N -0.479 5.479 15 C 0.031 3.969 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.051 3.949 25 C -0.099 4.099 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.037 0.963 39 H 0.262 0.738 40 H 0.084 0.916 41 H 0.033 0.967 42 H 0.082 0.918 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.410 -6.550 4.712 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.005 4.005 4 C 0.037 3.963 5 C -0.095 4.095 6 N -0.108 5.108 7 C -0.142 4.142 8 C -0.082 4.082 9 N -0.262 5.262 10 C -0.066 4.066 11 C -0.012 4.012 12 H 0.117 0.883 13 C -0.059 4.059 14 N -0.156 5.156 15 C -0.008 4.008 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.077 4.077 25 C -0.138 4.138 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.105 0.895 29 H 0.076 0.924 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.051 0.949 42 H 0.101 0.899 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.445 -6.803 4.244 22.895 hybrid contribution 0.684 0.802 0.706 1.269 sum -20.761 -6.001 4.950 22.171 Atomic orbital electron populations 1.22757 0.80573 1.02974 1.00138 1.87908 1.20004 1.27274 1.95471 1.22579 0.90587 0.85502 1.01881 1.18496 0.94070 0.95417 0.88310 1.28790 0.93060 0.93578 0.94051 1.81207 1.08943 1.09223 1.11459 1.21692 0.95725 0.92703 1.04102 1.22199 0.94481 1.00489 0.91008 1.62013 1.11884 1.15308 1.37038 1.22236 0.85506 0.97099 1.01786 1.19245 0.99483 0.94166 0.88303 0.88271 1.28742 0.90835 0.92074 0.94262 1.80924 1.12163 1.10209 1.12306 1.19172 0.84514 0.98293 0.98806 1.21131 0.91921 0.92180 1.51174 0.92486 1.24955 0.96994 0.97095 0.94936 1.69933 1.02385 1.30668 1.50022 0.86597 0.78408 0.84933 0.78186 1.20502 1.21157 1.19820 1.22136 0.94291 0.89869 1.01442 1.21656 0.95537 1.01178 0.95394 0.94056 0.93672 0.89529 0.92350 0.90792 0.90330 0.88464 0.94583 0.88834 0.89945 0.92832 0.95532 0.94518 0.92786 0.89764 0.94912 0.89918 0.88910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.35 9.70 -35.23 -0.34 -3.69 16 3 C 0.07 0.51 4.79 37.16 0.18 0.69 16 4 C 0.04 0.36 0.56 -157.17 -0.09 0.27 16 5 C 0.22 2.63 11.24 -20.74 -0.23 2.40 16 6 N -0.43 -6.27 18.54 42.17 0.78 -5.49 16 7 C -0.10 -0.86 4.86 -26.65 -0.13 -0.99 16 8 C 0.05 0.51 5.09 -3.84 -0.02 0.49 16 9 N -0.54 -6.59 4.32 -234.68 -1.01 -7.60 16 10 C 0.06 0.89 4.34 -3.82 -0.02 0.87 16 11 C 0.01 0.18 2.12 -93.41 -0.20 -0.02 16 12 H 0.10 1.63 6.29 -51.93 -0.33 1.30 16 13 C 0.26 5.14 13.63 -20.80 -0.28 4.85 16 14 N -0.48 -10.39 18.53 42.10 0.78 -9.61 16 15 C 0.03 0.70 4.42 -27.89 -0.12 0.58 16 16 C -0.53 -13.79 8.60 -34.44 -0.30 -14.09 16 17 H 0.06 1.48 7.59 -52.48 -0.40 1.08 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 19 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 20 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.05 0.54 5.25 -3.83 -0.02 0.52 16 25 C -0.10 -0.88 4.68 -26.65 -0.12 -1.00 16 26 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 27 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 0.43 8.14 -51.92 -0.42 0.00 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.04 0.43 7.32 -51.93 -0.38 0.05 16 34 H 0.09 1.05 6.16 -51.93 -0.32 0.73 16 35 H 0.08 1.18 7.98 -51.93 -0.41 0.77 16 36 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 37 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 40 H 0.08 0.87 8.01 -51.93 -0.42 0.45 16 41 H 0.03 0.38 7.32 -51.93 -0.38 0.00 16 42 H 0.08 0.73 7.77 -51.93 -0.40 0.33 16 43 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 357.57 15.07 5.39 5.39 Total: -1.00 -32.07 357.57 -5.85 -37.92 By element: Atomic # 1 Polarization: 1.03 SS G_CDS: -6.82 Total: -5.80 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -0.34 Total: -2.54 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 1.28 Total: -47.38 kcal Atomic # 8 Polarization: -3.35 SS G_CDS: -0.34 Total: -3.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.07 -5.85 -37.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341979362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.108 kcal (2) G-P(sol) polarization free energy of solvation -32.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds