Wall clock time and date at job start Tue Mar 31 2020 07:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42907 * 113.99495 * 2 1 4 4 C 1.53001 * 109.46758 * 180.02562 * 3 2 1 5 5 C 1.47205 * 109.52275 * 300.12145 * 4 3 2 6 6 N 3.57988 * 143.50741 * 93.06552 * 2 1 3 7 7 C 1.53118 * 109.52139 * 180.02562 * 4 3 2 8 8 C 1.53040 * 109.27832 * 182.44103 * 7 4 3 9 9 N 1.46836 * 109.52612 * 59.17585 * 8 7 4 10 10 C 1.46900 * 111.00343 * 174.16281 * 9 8 7 11 11 C 1.53000 * 109.47017 * 293.83791 * 10 9 8 12 12 H 1.09000 * 109.47019 * 56.33921 * 11 10 9 13 13 C 1.47201 * 109.47192 * 296.34045 * 11 10 9 14 14 N 7.95282 * 134.95472 * 315.50387 * 2 1 3 15 15 C 1.52996 * 109.47342 * 176.33914 * 11 10 9 16 16 C 1.50696 * 109.47302 * 184.99910 * 15 11 10 17 17 H 1.08003 * 120.00282 * 0.02562 * 16 15 11 18 18 C 1.37883 * 120.00050 * 179.72747 * 16 15 11 19 19 N 1.31508 * 120.00094 * 0.27564 * 18 16 15 20 20 Si 1.86797 * 119.99799 * 180.27761 * 18 16 15 21 21 H 1.48501 * 109.47362 * 89.99934 * 20 18 16 22 22 H 1.48504 * 109.46761 * 209.99856 * 20 18 16 23 23 H 1.48494 * 109.47503 * 329.99411 * 20 18 16 24 24 C 1.46848 * 111.19980 * 298.25834 * 9 8 7 25 25 C 1.53043 * 109.52126 * 61.74163 * 24 9 8 26 26 H 1.09005 * 109.46994 * 299.99423 * 1 2 3 27 27 H 1.08995 * 109.47400 * 59.99998 * 1 2 3 28 28 H 1.09009 * 109.46816 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47241 * 59.99954 * 3 2 1 30 30 H 1.08999 * 109.46902 * 300.00014 * 3 2 1 31 31 H 1.08999 * 109.50585 * 62.49181 * 7 4 3 32 32 H 1.09003 * 109.49952 * 302.37828 * 7 4 3 33 33 H 1.08997 * 109.45816 * 299.15345 * 8 7 4 34 34 H 1.09003 * 109.46440 * 179.19516 * 8 7 4 35 35 H 1.08994 * 109.47553 * 173.83760 * 10 9 8 36 36 H 1.08997 * 109.47109 * 53.83342 * 10 9 8 37 37 H 1.09001 * 109.47144 * 65.00141 * 15 11 10 38 38 H 1.08997 * 109.47473 * 305.00307 * 15 11 10 39 39 H 0.96998 * 120.00491 * 180.02562 * 19 18 16 40 40 H 1.09000 * 109.46803 * 181.76094 * 24 9 8 41 41 H 1.09003 * 109.46427 * 301.72884 * 24 9 8 42 42 H 1.09004 * 109.49958 * 180.88503 * 25 24 9 43 43 H 1.08996 * 109.50235 * 60.76687 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3056 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 3.9713 0.4517 1.1991 6 7 4.3070 -0.1139 2.1260 7 6 4.1593 2.5831 0.0000 8 6 5.6832 2.4564 -0.0622 9 7 6.0661 1.7305 -1.2798 10 6 7.5258 1.7102 -1.4437 11 6 8.0304 3.1323 -1.6968 12 1 7.7124 3.7812 -0.8808 13 6 7.4752 3.6314 -2.9655 14 7 7.0480 4.0144 -3.9444 15 6 9.5582 3.1247 -1.7766 16 6 10.0617 4.5394 -1.9030 17 1 9.3620 5.3618 -1.9238 18 6 11.4161 4.7843 -1.9858 19 7 12.2682 3.7830 -1.9600 20 14 12.0405 6.5386 -2.1347 21 1 12.2743 7.0975 -0.7789 22 1 13.3131 6.5477 -2.9001 23 1 11.0308 7.3650 -2.8435 24 6 5.5175 0.3684 -1.2807 25 6 3.9886 0.4328 -1.2550 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 1.6885 1.8465 0.8900 30 1 1.6884 1.8464 -0.8900 31 1 3.8746 3.1083 0.9117 32 1 3.8048 3.1401 -0.8673 33 1 6.0382 1.9113 0.8124 34 1 6.1301 3.4505 -0.0763 35 1 7.7876 1.0757 -2.2904 36 1 7.9876 1.3167 -0.5382 37 1 9.8738 2.5477 -2.6460 38 1 9.9671 2.6728 -0.8729 39 1 13.2210 3.9553 -2.0179 40 1 5.8439 -0.1541 -2.1799 41 1 5.8733 -0.1670 -0.4004 42 1 3.5821 -0.5785 -1.2398 43 1 3.6315 0.9559 -2.1420 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341979362.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:11 Heat of formation + Delta-G solvation = -22.161213 kcal Electronic energy + Delta-G solvation = -23124.124342 eV Core-core repulsion = 19782.300150 eV Total energy + Delta-G solvation = -3341.824192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.07170 -38.99794 -37.97055 -37.02147 -35.69472 -34.94454 -33.14624 -31.88951 -29.58334 -27.92343 -26.73667 -24.71102 -24.31229 -23.79367 -23.15325 -21.85370 -18.54610 -18.18238 -17.74642 -17.23564 -17.08653 -16.59510 -16.42618 -15.94886 -15.84778 -15.35023 -15.20852 -14.88518 -14.53465 -14.38938 -14.27795 -14.05155 -13.71163 -13.49534 -13.29365 -13.16667 -13.07518 -12.99117 -12.85365 -12.78414 -12.46378 -12.36950 -12.28204 -12.13211 -12.09134 -11.92027 -11.48938 -11.41350 -11.22308 -10.99667 -10.56946 -10.53711 -9.26797 -8.18079 -6.26413 1.41666 1.43652 1.52833 1.75537 1.79989 2.14836 2.22094 2.42770 2.72098 2.83987 2.98445 3.17738 3.39799 3.68947 3.74163 3.92963 4.08170 4.28741 4.31863 4.39525 4.44932 4.52147 4.55979 4.60623 4.64927 4.69517 4.76751 4.78247 4.82982 4.92231 4.95549 5.00267 5.05495 5.12010 5.22349 5.28175 5.48233 5.62806 5.80654 6.03850 6.17728 6.22188 6.23167 6.59088 6.86008 7.00024 7.42386 8.92991 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.030377 B = 0.003131 C = 0.003058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.520859 B = 8942.041352 C = 9152.963024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.415 6.415 3 C 0.072 3.928 4 C 0.042 3.958 5 C 0.243 3.757 6 N -0.489 5.489 7 C -0.097 4.097 8 C 0.041 3.959 9 N -0.538 5.538 10 C 0.071 3.929 11 C 0.023 3.977 12 H 0.118 0.882 13 C 0.269 3.731 14 N -0.507 5.507 15 C 0.036 3.964 16 C -0.536 4.536 17 H 0.057 0.943 18 C 0.009 3.991 19 N -0.926 5.926 20 Si 0.949 3.051 21 H -0.268 1.268 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.050 3.950 25 C -0.092 4.092 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.114 0.886 33 H 0.024 0.976 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.057 0.943 37 H 0.001 0.999 38 H 0.029 0.971 39 H 0.263 0.737 40 H 0.087 0.913 41 H 0.019 0.981 42 H 0.083 0.917 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.336 -5.486 4.627 24.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.334 6.334 3 C -0.005 4.005 4 C 0.039 3.961 5 C -0.074 4.074 6 N -0.164 5.164 7 C -0.136 4.136 8 C -0.087 4.087 9 N -0.263 5.263 10 C -0.058 4.058 11 C 0.001 3.999 12 H 0.135 0.865 13 C -0.047 4.047 14 N -0.185 5.185 15 C -0.003 4.003 16 C -0.574 4.574 17 H 0.075 0.925 18 C -0.189 4.189 19 N -0.566 5.566 20 Si 0.775 3.225 21 H -0.193 1.193 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.077 4.077 25 C -0.131 4.131 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.107 0.893 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.115 0.885 32 H 0.132 0.868 33 H 0.042 0.958 34 H 0.110 0.890 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.020 0.980 38 H 0.047 0.953 39 H 0.072 0.928 40 H 0.106 0.894 41 H 0.037 0.963 42 H 0.102 0.898 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.395 -5.737 4.167 24.446 hybrid contribution 1.269 0.441 0.720 1.524 sum -22.126 -5.296 4.887 23.270 Atomic orbital electron populations 1.22899 0.79213 1.03586 1.01166 1.87867 1.21578 1.28254 1.95716 1.22665 0.88809 0.85350 1.03667 1.18718 0.95667 0.95119 0.86640 1.29437 0.91525 0.92514 0.93916 1.81217 1.10855 1.11010 1.13349 1.21703 0.93413 0.92630 1.05850 1.22301 0.96636 0.99884 0.89886 1.62012 1.10120 1.16312 1.37835 1.22042 0.87299 0.94577 1.01922 1.19123 0.96080 0.96707 0.87980 0.86456 1.29055 0.90203 0.91225 0.94241 1.80927 1.13125 1.11358 1.13071 1.18991 0.87937 0.96147 0.97187 1.21557 0.92076 0.93738 1.50058 0.92452 1.25739 0.97541 1.00635 0.95015 1.70037 1.02606 1.32516 1.51413 0.85677 0.77619 0.80659 0.78532 1.19306 1.21190 1.19730 1.22184 0.95720 0.88827 1.01009 1.21624 0.93780 1.01637 0.96030 0.93467 0.92150 0.89277 0.91306 0.88231 0.88499 0.86810 0.95783 0.88984 0.90130 0.92480 0.98017 0.95281 0.92785 0.89430 0.96257 0.89804 0.87428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.50 16 2 O -0.41 -6.23 9.70 -148.98 -1.45 -7.68 16 3 C 0.07 0.79 4.79 71.98 0.34 1.14 16 4 C 0.04 0.63 0.56 -53.91 -0.03 0.60 16 5 C 0.24 5.47 11.24 89.44 1.01 6.48 16 6 N -0.49 -14.10 18.54 20.01 0.37 -13.73 16 7 C -0.10 -1.33 4.86 30.65 0.15 -1.18 16 8 C 0.04 0.82 5.09 86.33 0.44 1.26 16 9 N -0.54 -12.33 4.32 -896.38 -3.87 -16.21 16 10 C 0.07 1.97 4.34 86.30 0.37 2.34 16 11 C 0.02 0.79 2.12 -12.60 -0.03 0.76 16 12 H 0.12 3.67 6.29 -2.39 -0.02 3.65 16 13 C 0.27 10.44 13.63 89.46 1.22 11.65 16 14 N -0.51 -21.46 18.53 19.99 0.37 -21.09 16 15 C 0.04 1.65 4.42 29.85 0.13 1.79 16 16 C -0.54 -28.01 8.60 25.60 0.22 -27.79 16 17 H 0.06 2.93 7.59 -2.91 -0.02 2.91 16 18 C 0.01 0.51 5.46 84.66 0.46 0.98 16 19 N -0.93 -53.27 13.29 21.45 0.28 -52.98 16 20 Si 0.95 43.07 29.54 68.60 2.03 45.09 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 C 0.05 1.01 5.25 86.33 0.45 1.47 16 25 C -0.09 -1.43 4.68 30.65 0.14 -1.28 16 26 H 0.05 0.36 8.14 -2.38 -0.02 0.35 16 27 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.02 0.55 7.32 -2.39 -0.02 0.53 16 34 H 0.09 1.87 6.16 -2.39 -0.01 1.86 16 35 H 0.08 2.27 7.98 -2.39 -0.02 2.25 16 36 H 0.06 1.56 8.12 -2.39 -0.02 1.54 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.09 1.69 8.01 -2.39 -0.02 1.68 16 41 H 0.02 0.44 7.32 -2.39 -0.02 0.43 16 42 H 0.08 1.32 7.77 -2.39 -0.02 1.31 16 43 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -68.94 357.57 4.86 -64.07 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: 0.99 Total: 2.81 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 6.13 Total: -0.30 kcal Atomic # 7 Polarization: -101.16 SS G_CDS: -2.84 Total: -104.00 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -1.45 Total: -7.68 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.09 kcal Total: -68.94 4.86 -64.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341979362.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.912 kcal (2) G-P(sol) polarization free energy of solvation -68.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.073 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds