Wall clock time and date at job start Tue Mar 31 2020 06:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46798 * 2 1 4 4 C 1.46505 * 119.99900 * 269.99839 * 3 2 1 5 5 C 1.53004 * 109.46930 * 270.00302 * 4 3 2 6 6 C 1.39218 * 120.00046 * 90.00499 * 3 2 1 7 7 C 1.39114 * 119.63072 * 4.99266 * 6 3 2 8 8 C 1.38251 * 119.16805 * 180.02562 * 7 6 3 9 9 C 1.39420 * 118.44793 * 0.02562 * 8 7 6 10 10 N 1.40183 * 120.40170 * 179.97438 * 9 8 7 11 11 C 1.34772 * 120.00060 * 34.95860 * 10 9 8 12 12 O 1.21298 * 120.00410 * 355.32497 * 11 10 9 13 13 C 1.50707 * 119.99901 * 175.04392 * 11 10 9 14 14 C 1.53004 * 109.47257 * 180.27198 * 13 11 10 15 15 C 1.50698 * 109.47230 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99979 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00057 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46831 * 90.00348 * 19 17 15 21 21 H 1.48499 * 109.47055 * 209.99952 * 19 17 15 22 22 H 1.48495 * 109.47271 * 330.00496 * 19 17 15 23 23 C 1.38616 * 119.18964 * 0.24559 * 9 8 7 24 24 N 1.31964 * 120.76215 * 359.50411 * 23 9 8 25 25 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47001 * 299.99634 * 1 2 3 27 27 H 1.08998 * 109.47444 * 59.99723 * 1 2 3 28 28 H 1.09001 * 109.47097 * 239.99907 * 2 1 3 29 29 H 1.08995 * 109.47132 * 119.99585 * 2 1 3 30 30 H 1.09002 * 109.46806 * 30.00351 * 4 3 2 31 31 H 1.08990 * 109.46804 * 150.00477 * 4 3 2 32 32 H 1.08990 * 109.47082 * 299.99904 * 5 4 3 33 33 H 1.09002 * 109.46895 * 60.00170 * 5 4 3 34 34 H 1.09000 * 109.46520 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.41428 * 0.03061 * 7 6 3 36 36 H 1.08004 * 120.77515 * 179.97438 * 8 7 6 37 37 H 0.97001 * 120.00275 * 214.95404 * 10 9 8 38 38 H 1.08988 * 109.47472 * 300.27664 * 13 11 10 39 39 H 1.09001 * 109.46690 * 60.28302 * 13 11 10 40 40 H 1.08995 * 109.47199 * 300.00984 * 14 13 11 41 41 H 1.09004 * 109.46389 * 60.00373 * 14 13 11 42 42 H 0.97001 * 120.00605 * 179.97438 * 18 17 15 43 43 H 1.08002 * 119.62102 * 179.74979 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.7075 1.8314 -1.7104 6 6 2.2504 2.0375 1.2057 7 6 2.1166 1.3431 2.4036 8 6 2.3489 2.0043 3.5953 9 6 2.7098 3.3501 3.5487 10 7 2.9544 4.0605 4.7322 11 6 3.5278 3.4417 5.7833 12 8 3.7548 2.2511 5.7363 13 6 3.8929 4.2303 7.0146 14 6 4.5296 3.2979 8.0472 15 6 4.8940 4.0863 9.2787 16 1 4.6921 5.1464 9.3205 17 6 5.4861 3.4544 10.3516 18 7 5.7333 2.1638 10.3001 19 14 5.9385 4.4319 11.8778 20 1 4.7948 4.4282 12.8250 21 1 7.1219 3.8142 12.5284 22 1 6.2583 5.8301 11.4934 23 6 2.8184 3.9787 2.3180 24 7 2.5941 3.3156 1.1993 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 4.3882 2.2155 -0.9508 33 1 3.8744 0.7622 -1.8407 34 1 3.8890 2.3449 -2.6546 35 1 1.8350 0.3004 2.4027 36 1 2.2521 1.4905 4.5404 37 1 2.7110 4.9973 4.7948 38 1 4.6013 5.0142 6.7472 39 1 2.9946 4.6807 7.4370 40 1 3.8211 2.5139 8.3145 41 1 5.4277 2.8473 7.6248 42 1 6.1503 1.7192 11.0547 43 1 3.0936 5.0221 2.2740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360004063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:56 Heat of formation + Delta-G solvation = -1.306214 kcal Electronic energy + Delta-G solvation = -22473.400111 eV Core-core repulsion = 19132.480260 eV Total energy + Delta-G solvation = -3340.919851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.64110 -39.19395 -37.21002 -34.49208 -33.51240 -32.79954 -31.64271 -31.15503 -30.27127 -27.86782 -25.70473 -24.46409 -23.63399 -22.75752 -21.77241 -20.61873 -19.67104 -17.82858 -17.22469 -16.86973 -16.49189 -15.70781 -15.31516 -15.10720 -14.72637 -14.46298 -14.40474 -13.94144 -13.67279 -13.44725 -13.21350 -13.03946 -12.71619 -12.56153 -12.37283 -12.21523 -12.04789 -11.95613 -11.30462 -11.20791 -11.14389 -10.95718 -10.69214 -10.61806 -10.00052 -9.84052 -9.67224 -9.59135 -9.22039 -9.08323 -8.82089 -8.34393 -7.25369 -5.98228 -4.02826 1.29047 1.52617 2.78441 3.11428 3.32344 3.37992 3.40365 3.45858 3.99208 4.43231 4.46259 4.69560 4.82226 4.89340 5.03767 5.08565 5.09743 5.19169 5.20133 5.27600 5.36930 5.44853 5.47985 5.55873 5.60191 5.73229 5.77272 5.89637 5.99647 6.06918 6.14131 6.16016 6.26127 6.44166 6.82928 6.89689 6.92649 7.36043 7.70775 7.73336 7.81984 8.03847 8.15045 8.35076 8.63631 9.05354 9.60963 11.12704 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035551 B = 0.002563 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.417542 B =10921.960701 C =11204.474698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.122 3.878 3 N -0.613 5.613 4 C 0.127 3.873 5 C -0.167 4.167 6 C 0.382 3.618 7 C -0.219 4.219 8 C -0.036 4.036 9 C 0.048 3.952 10 N -0.679 5.679 11 C 0.509 3.491 12 O -0.519 6.519 13 C -0.128 4.128 14 C 0.037 3.963 15 C -0.528 4.528 16 H 0.056 0.944 17 C 0.058 3.942 18 N -0.890 5.890 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.117 3.883 24 N -0.524 5.524 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.132 0.868 36 H 0.149 0.851 37 H 0.408 0.592 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.024 0.976 41 H 0.024 0.976 42 H 0.261 0.739 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 0.122 -23.565 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.002 4.002 3 N -0.329 5.329 4 C 0.004 3.996 5 C -0.226 4.226 6 C 0.148 3.852 7 C -0.244 4.244 8 C -0.064 4.064 9 C -0.051 4.051 10 N -0.326 5.326 11 C 0.299 3.701 12 O -0.393 6.393 13 C -0.168 4.168 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.075 0.925 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.043 4.043 24 N -0.241 5.241 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.150 0.850 36 H 0.167 0.833 37 H 0.243 0.757 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.071 0.929 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -9.955 -0.539 -24.372 26.332 hybrid contribution 0.137 0.500 1.685 1.763 sum -9.818 -0.039 -22.687 24.720 Atomic orbital electron populations 1.22236 0.96305 1.02001 1.02537 1.21414 0.93973 0.81892 1.02904 1.46415 1.71066 1.12887 1.02495 1.21259 0.95622 0.98559 0.84149 1.22163 0.97792 1.01365 1.01248 1.18257 0.92652 0.88450 0.85817 1.21384 1.10481 1.01291 0.91245 1.21582 0.92280 0.93373 0.99184 1.18618 1.05240 0.93839 0.87373 1.43722 1.62291 1.14458 1.12112 1.21815 0.75154 0.88779 0.84369 1.90654 1.51937 1.15679 1.81049 1.21895 1.02095 1.00317 0.92516 1.18912 0.96317 0.93734 0.91117 1.21206 1.40376 0.95017 1.00023 0.92540 1.25025 0.95782 0.94885 0.98691 1.69993 1.42719 1.08861 1.31239 0.86581 0.78025 0.80116 0.83169 1.20657 1.21219 1.19869 1.22162 0.96920 0.99658 0.85549 1.67066 1.19233 1.07429 1.30368 0.91679 0.92244 0.92549 0.90629 0.90408 0.91658 0.89722 0.92275 0.93101 0.92085 0.85013 0.83297 0.75684 0.89836 0.89897 0.95761 0.95755 0.92918 0.82841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.19 10.24 37.16 0.38 -0.81 16 2 C 0.12 0.94 5.97 -4.04 -0.02 0.92 16 3 N -0.61 -6.26 2.59 -173.78 -0.45 -6.71 16 4 C 0.13 1.12 6.19 -4.04 -0.03 1.09 16 5 C -0.17 -1.42 10.24 37.16 0.38 -1.04 16 6 C 0.38 4.94 7.38 -154.86 -1.14 3.79 16 7 C -0.22 -2.92 9.27 -39.25 -0.36 -3.28 16 8 C -0.04 -0.56 8.80 -39.14 -0.34 -0.90 16 9 C 0.05 0.70 6.32 -83.46 -0.53 0.17 16 10 N -0.68 -9.62 5.36 -9.73 -0.05 -9.67 16 11 C 0.51 9.52 7.69 -10.98 -0.08 9.43 16 12 O -0.52 -11.76 13.46 5.54 0.07 -11.69 16 13 C -0.13 -2.50 5.64 -27.88 -0.16 -2.66 16 14 C 0.04 0.97 4.26 -27.88 -0.12 0.85 16 15 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.25 13.29 55.43 0.74 -26.52 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 23 C 0.12 1.50 11.11 -17.36 -0.19 1.31 16 24 N -0.52 -7.06 9.07 -12.25 -0.11 -7.17 16 25 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.08 0.47 8.07 -51.93 -0.42 0.05 16 29 H 0.08 0.61 5.97 -51.93 -0.31 0.30 16 30 H 0.07 0.45 8.07 -51.93 -0.42 0.03 16 31 H 0.08 0.84 7.30 -51.93 -0.38 0.46 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.13 1.49 6.02 -52.49 -0.32 1.17 16 36 H 0.15 2.55 6.32 -52.48 -0.33 2.22 16 37 H 0.41 4.25 8.83 -40.82 -0.36 3.89 16 38 H 0.08 1.48 8.14 -51.94 -0.42 1.06 16 39 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.15 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 358.32 15.07 5.40 5.40 Total: -1.00 -34.13 358.32 -8.78 -42.90 By element: Atomic # 1 Polarization: 8.33 SS G_CDS: -6.72 Total: 1.60 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.63 Total: -4.66 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.12 Total: -50.07 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.07 Total: -11.69 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.13 -8.78 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360004063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.597 kcal (2) G-P(sol) polarization free energy of solvation -34.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds