Wall clock time and date at job start Tue Mar 31 2020 06:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46798 * 2 1 4 4 C 1.46505 * 119.99900 * 269.99839 * 3 2 1 5 5 C 1.53004 * 109.46930 * 270.00302 * 4 3 2 6 6 C 1.39218 * 120.00046 * 90.00499 * 3 2 1 7 7 C 1.39114 * 119.63072 * 4.99266 * 6 3 2 8 8 C 1.38251 * 119.16805 * 180.02562 * 7 6 3 9 9 C 1.39420 * 118.44793 * 0.02562 * 8 7 6 10 10 N 1.40183 * 120.40170 * 179.97438 * 9 8 7 11 11 C 1.34772 * 120.00060 * 34.95860 * 10 9 8 12 12 O 1.21298 * 120.00410 * 355.32497 * 11 10 9 13 13 C 1.50707 * 119.99901 * 175.04392 * 11 10 9 14 14 C 1.53004 * 109.47257 * 180.27198 * 13 11 10 15 15 C 1.50698 * 109.47230 * 180.02562 * 14 13 11 16 16 H 1.07997 * 119.99928 * 359.97438 * 15 14 13 17 17 C 1.37877 * 119.99979 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00057 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99953 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.46831 * 90.00348 * 19 17 15 21 21 H 1.48499 * 109.47055 * 209.99952 * 19 17 15 22 22 H 1.48495 * 109.47271 * 330.00496 * 19 17 15 23 23 C 1.38616 * 119.18964 * 0.24559 * 9 8 7 24 24 N 1.31964 * 120.76215 * 359.50411 * 23 9 8 25 25 H 1.09001 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.47001 * 299.99634 * 1 2 3 27 27 H 1.08998 * 109.47444 * 59.99723 * 1 2 3 28 28 H 1.09001 * 109.47097 * 239.99907 * 2 1 3 29 29 H 1.08995 * 109.47132 * 119.99585 * 2 1 3 30 30 H 1.09002 * 109.46806 * 30.00351 * 4 3 2 31 31 H 1.08990 * 109.46804 * 150.00477 * 4 3 2 32 32 H 1.08990 * 109.47082 * 299.99904 * 5 4 3 33 33 H 1.09002 * 109.46895 * 60.00170 * 5 4 3 34 34 H 1.09000 * 109.46520 * 179.97438 * 5 4 3 35 35 H 1.08001 * 120.41428 * 0.03061 * 7 6 3 36 36 H 1.08004 * 120.77515 * 179.97438 * 8 7 6 37 37 H 0.97001 * 120.00275 * 214.95404 * 10 9 8 38 38 H 1.08988 * 109.47472 * 300.27664 * 13 11 10 39 39 H 1.09001 * 109.46690 * 60.28302 * 13 11 10 40 40 H 1.08995 * 109.47199 * 300.00984 * 14 13 11 41 41 H 1.09004 * 109.46389 * 60.00373 * 14 13 11 42 42 H 0.97001 * 120.00605 * 179.97438 * 18 17 15 43 43 H 1.08002 * 119.62102 * 179.74979 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 -1.2688 5 6 3.7075 1.8314 -1.7104 6 6 2.2504 2.0375 1.2057 7 6 2.1166 1.3431 2.4036 8 6 2.3489 2.0043 3.5953 9 6 2.7098 3.3501 3.5487 10 7 2.9544 4.0605 4.7322 11 6 3.5278 3.4417 5.7833 12 8 3.7548 2.2511 5.7363 13 6 3.8929 4.2303 7.0146 14 6 4.5296 3.2979 8.0472 15 6 4.8940 4.0863 9.2787 16 1 4.6921 5.1464 9.3205 17 6 5.4861 3.4544 10.3516 18 7 5.7333 2.1638 10.3001 19 14 5.9385 4.4319 11.8778 20 1 4.7948 4.4282 12.8250 21 1 7.1219 3.8142 12.5284 22 1 6.2583 5.8301 11.4934 23 6 2.8184 3.9787 2.3180 24 7 2.5941 3.3156 1.1993 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.5816 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1384 32 1 4.3882 2.2155 -0.9508 33 1 3.8744 0.7622 -1.8407 34 1 3.8890 2.3449 -2.6546 35 1 1.8350 0.3004 2.4027 36 1 2.2521 1.4905 4.5404 37 1 2.7110 4.9973 4.7948 38 1 4.6013 5.0142 6.7472 39 1 2.9946 4.6807 7.4370 40 1 3.8211 2.5139 8.3145 41 1 5.4277 2.8473 7.6248 42 1 6.1503 1.7192 11.0547 43 1 3.0936 5.0221 2.2740 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360004063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:54 Heat of formation + Delta-G solvation = -22.471744 kcal Electronic energy + Delta-G solvation = -22474.317917 eV Core-core repulsion = 19132.480260 eV Total energy + Delta-G solvation = -3341.837657 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.77561 -40.47622 -38.14930 -35.80441 -35.51456 -33.68291 -33.08864 -32.39125 -31.35766 -28.93782 -27.50101 -25.33091 -24.81387 -23.70959 -23.32289 -21.68476 -21.06692 -19.01533 -18.66065 -18.10603 -17.76648 -17.20288 -16.46602 -16.45503 -16.19743 -15.75926 -15.33707 -15.07955 -14.82463 -14.43352 -14.28983 -14.22840 -13.97859 -13.88096 -13.60470 -13.27299 -13.22912 -12.82327 -12.79184 -12.60118 -12.47570 -11.99789 -11.90943 -11.87616 -11.78734 -11.63408 -11.30048 -11.03674 -10.67618 -10.56140 -10.43989 -9.96085 -8.23092 -8.17366 -6.31314 0.24129 0.39475 1.42969 1.45468 1.56355 1.67794 1.94377 2.21530 2.44930 2.93541 3.15804 3.55718 3.87723 3.97083 4.01619 4.11705 4.18059 4.27951 4.30568 4.50250 4.52379 4.54612 4.56434 4.60594 4.74482 4.76259 4.83157 4.98454 5.03215 5.07768 5.09761 5.14960 5.30591 5.33341 5.40700 5.50929 5.64110 5.76979 5.86577 6.09992 6.18055 6.43610 6.52763 6.87401 7.13693 7.28028 7.39009 8.95075 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.035551 B = 0.002563 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.417542 B =10921.960701 C =11204.474698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.115 3.885 3 N -0.610 5.610 4 C 0.124 3.876 5 C -0.160 4.160 6 C 0.381 3.619 7 C -0.226 4.226 8 C -0.055 4.055 9 C 0.022 3.978 10 N -0.652 5.652 11 C 0.511 3.489 12 O -0.570 6.570 13 C -0.116 4.116 14 C 0.042 3.958 15 C -0.542 4.542 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.938 5.938 19 Si 0.973 3.027 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.255 1.255 23 C 0.131 3.869 24 N -0.534 5.534 25 H 0.081 0.919 26 H 0.040 0.960 27 H 0.060 0.940 28 H 0.098 0.902 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.031 0.969 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.145 0.855 36 H 0.122 0.878 37 H 0.428 0.572 38 H 0.109 0.891 39 H 0.110 0.890 40 H -0.016 1.016 41 H -0.018 1.018 42 H 0.262 0.738 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.989 2.142 -25.180 27.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.008 4.008 3 N -0.324 5.324 4 C 0.002 3.998 5 C -0.219 4.219 6 C 0.146 3.854 7 C -0.251 4.251 8 C -0.082 4.082 9 C -0.076 4.076 10 N -0.300 5.300 11 C 0.300 3.700 12 O -0.448 6.448 13 C -0.155 4.155 14 C 0.004 3.996 15 C -0.580 4.580 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.797 3.203 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.179 1.179 23 C -0.029 4.029 24 N -0.251 5.251 25 H 0.100 0.900 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.092 0.908 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.140 0.860 37 H 0.268 0.732 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.002 0.998 41 H 0.000 1.000 42 H 0.071 0.929 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -10.690 1.521 -26.057 28.206 hybrid contribution 0.306 -0.203 2.014 2.047 sum -10.384 1.317 -24.043 26.223 Atomic orbital electron populations 1.22169 0.95467 1.02928 1.01807 1.21643 0.94592 0.80693 1.03842 1.46731 1.69934 1.13658 1.02100 1.21399 0.96440 0.98027 0.83948 1.22101 0.96826 1.01803 1.01181 1.18502 0.91691 0.88488 0.86705 1.21482 1.10700 1.02012 0.90894 1.21507 0.93603 0.94234 0.98891 1.18714 1.07231 0.93794 0.87854 1.43271 1.60619 1.15191 1.10936 1.21592 0.75238 0.87983 0.85150 1.90649 1.54385 1.17743 1.82039 1.21647 1.03356 0.99171 0.91347 1.18697 0.94028 0.93963 0.92919 1.21724 1.39754 0.96084 1.00409 0.90431 1.26133 0.95692 0.95913 1.02772 1.70175 1.43979 1.11164 1.32523 0.85329 0.77641 0.79017 0.78312 1.19719 1.21336 1.17852 1.22599 0.94975 1.00803 0.84489 1.67202 1.19831 1.07702 1.30385 0.89973 0.94092 0.92064 0.88345 0.90839 0.89008 0.90833 0.94957 0.92515 0.90326 0.83701 0.85960 0.73219 0.87250 0.87168 0.99774 0.99967 0.92902 0.79650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.99 10.24 71.98 0.74 -1.25 16 2 C 0.11 1.56 5.97 86.38 0.52 2.08 16 3 N -0.61 -11.50 2.59 -703.72 -1.83 -13.33 16 4 C 0.12 1.91 6.19 86.38 0.53 2.44 16 5 C -0.16 -2.41 10.24 71.98 0.74 -1.67 16 6 C 0.38 9.57 7.38 133.00 0.98 10.55 16 7 C -0.23 -6.12 9.27 22.48 0.21 -5.91 16 8 C -0.05 -1.75 8.80 22.56 0.20 -1.55 16 9 C 0.02 0.65 6.32 38.18 0.24 0.89 16 10 N -0.65 -17.99 5.36 -303.07 -1.62 -19.62 16 11 C 0.51 19.44 7.69 87.66 0.67 20.11 16 12 O -0.57 -27.41 13.46 -3.08 -0.04 -27.45 16 13 C -0.12 -4.47 5.64 29.85 0.17 -4.30 16 14 C 0.04 2.28 4.26 29.85 0.13 2.41 16 15 C -0.54 -30.51 9.11 25.60 0.23 -30.28 16 16 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 17 C -0.01 -0.45 5.46 84.65 0.46 0.01 16 18 N -0.94 -59.52 13.29 21.45 0.28 -59.24 16 19 Si 0.97 44.15 29.54 68.60 2.03 46.17 16 20 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 21 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 23 C 0.13 3.17 11.11 84.76 0.94 4.11 16 24 N -0.53 -13.71 9.07 -192.68 -1.75 -15.46 16 25 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 27 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.10 0.93 8.07 -2.39 -0.02 0.91 16 29 H 0.07 1.08 5.97 -2.39 -0.01 1.07 16 30 H 0.09 0.95 8.07 -2.39 -0.02 0.93 16 31 H 0.07 1.32 7.30 -2.39 -0.02 1.31 16 32 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.15 3.36 6.02 -2.91 -0.02 3.34 16 36 H 0.12 4.57 6.32 -2.91 -0.02 4.55 16 37 H 0.43 7.96 8.83 -92.71 -0.82 7.14 16 38 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 39 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 40 H -0.02 -1.00 8.10 -2.39 -0.02 -1.02 16 41 H -0.02 -1.13 8.10 -2.39 -0.02 -1.15 16 42 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 43 H 0.19 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -78.21 358.32 4.02 -74.19 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: 0.19 Total: 17.09 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 6.76 Total: -2.36 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -4.91 Total: -107.64 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: -0.04 Total: -27.45 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -78.21 4.02 -74.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360004063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.722 kcal (2) G-P(sol) polarization free energy of solvation -78.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds