Wall clock time and date at job start Tue Mar 31 2020 07:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39658 * 2 1 4 4 C 1.34674 * 106.81616 * 180.25008 * 3 2 1 5 5 N 1.34132 * 108.01721 * 359.74179 * 4 3 2 6 6 C 1.30498 * 109.25934 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.64975 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.52461 * 179.97438 * 7 6 5 9 9 C 1.53346 * 109.68835 * 59.77128 * 7 6 5 10 10 C 1.53034 * 109.61010 * 178.74685 * 9 7 6 11 11 C 1.53188 * 109.31404 * 61.37429 * 10 9 7 12 12 N 1.46933 * 108.77495 * 305.36890 * 11 10 9 13 13 C 1.34780 * 120.62602 * 233.63137 * 12 11 10 14 14 O 1.21284 * 119.99750 * 179.97438 * 13 12 11 15 15 C 1.50698 * 120.00162 * 359.97327 * 13 12 11 16 16 C 1.53004 * 109.46896 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46896 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00150 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00024 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00351 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47455 * 89.99706 * 21 19 17 23 23 H 1.48497 * 109.47578 * 209.99942 * 21 19 17 24 24 H 1.48503 * 109.47036 * 329.99685 * 21 19 17 25 25 C 1.46919 * 118.74003 * 53.60503 * 12 11 10 26 26 H 1.08995 * 109.47125 * 270.19171 * 1 2 3 27 27 H 1.09003 * 109.46776 * 30.18799 * 1 2 3 28 28 H 1.08997 * 109.47243 * 150.18685 * 1 2 3 29 29 H 1.07997 * 126.59377 * 359.97438 * 3 2 1 30 30 H 1.07998 * 125.98958 * 179.72039 * 4 3 2 31 31 H 1.08999 * 109.41979 * 58.70908 * 9 7 6 32 32 H 1.09000 * 109.43268 * 298.79665 * 9 7 6 33 33 H 1.08994 * 109.50232 * 301.42239 * 10 9 7 34 34 H 1.09000 * 109.49784 * 181.32304 * 10 9 7 35 35 H 1.08994 * 109.59289 * 185.57924 * 11 10 9 36 36 H 1.09002 * 109.58818 * 65.14921 * 11 10 9 37 37 H 1.09000 * 109.47171 * 299.99537 * 15 13 12 38 38 H 1.08993 * 109.47429 * 60.00485 * 15 13 12 39 39 H 1.08999 * 109.47240 * 299.99805 * 16 15 13 40 40 H 1.09003 * 109.47483 * 59.99982 * 16 15 13 41 41 H 0.97000 * 120.00295 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.58751 * 66.18300 * 25 12 11 43 43 H 1.08996 * 109.58750 * 186.46484 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0056 5 7 3.5095 -0.6903 -0.0032 6 6 2.2663 -1.0870 0.0031 7 6 1.8018 -2.5206 0.0082 8 1 0.7122 -2.5505 0.0136 9 6 2.3396 -3.2335 1.2548 10 6 1.8412 -4.6803 1.2742 11 6 2.3654 -5.4134 0.0355 12 7 1.9754 -4.6568 -1.1622 13 6 1.3082 -5.2580 -2.1672 14 8 0.9915 -4.6224 -3.1503 15 6 0.9558 -6.7199 -2.0692 16 6 0.2074 -7.1498 -3.3325 17 6 -0.1444 -8.6119 -3.2349 18 1 0.1379 -9.1780 -2.3595 19 6 -0.8259 -9.2272 -4.2635 20 7 -1.1693 -8.5380 -5.3296 21 14 -1.2614 -11.0397 -4.1428 22 1 -2.5937 -11.1872 -3.5037 23 1 -1.2972 -11.6319 -5.5041 24 1 -0.2395 -11.7409 -3.3247 25 6 2.3259 -3.2323 -1.2431 26 1 -0.3633 0.0034 1.0276 27 1 -0.3633 0.8883 -0.5168 28 1 -0.3633 -0.8916 -0.5109 29 1 1.9613 2.1345 -0.0004 30 1 4.4369 1.2611 -0.0114 31 1 1.9884 -2.7165 2.1478 32 1 3.4294 -3.2251 1.2356 33 1 0.7513 -4.6898 1.2685 34 1 2.2051 -5.1784 2.1728 35 1 1.9337 -6.4133 -0.0074 36 1 3.4519 -5.4841 0.0851 37 1 1.8684 -7.3078 -1.9703 38 1 0.3220 -6.8833 -1.1977 39 1 -0.7052 -6.5620 -3.4320 40 1 0.8415 -6.9865 -4.2039 41 1 -1.6491 -8.9707 -6.0532 42 1 3.4093 -3.1251 -1.2976 43 1 1.8703 -2.7937 -2.1308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360465092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:56 Heat of formation + Delta-G solvation = 12.436787 kcal Electronic energy + Delta-G solvation = -23246.777665 eV Core-core repulsion = 19906.453755 eV Total energy + Delta-G solvation = -3340.323910 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31803 -39.77666 -37.23058 -34.21792 -33.59005 -33.21540 -31.75747 -30.87699 -28.66603 -27.22056 -26.21176 -24.81722 -23.66034 -21.92218 -21.56706 -20.76195 -19.41786 -18.43747 -17.35080 -16.93296 -16.01426 -15.84542 -15.42672 -15.15914 -14.85965 -14.42599 -14.31550 -14.14963 -13.66958 -13.56386 -13.24010 -13.21050 -12.99684 -12.88592 -12.51619 -12.12731 -12.05609 -11.43093 -11.22948 -11.04744 -10.93282 -10.88421 -10.74236 -10.56890 -10.10155 -9.94683 -9.78818 -9.59404 -9.16576 -8.98742 -8.63532 -8.34662 -8.28193 -5.95285 -3.99639 1.83301 2.54203 2.96921 3.23976 3.30700 3.33592 3.40031 3.42725 4.20488 4.42035 4.47357 4.49284 4.67449 4.77906 4.79781 4.90634 4.96749 5.06508 5.19397 5.25576 5.34132 5.39639 5.41782 5.50823 5.59565 5.76441 5.79847 5.85522 5.89721 6.04837 6.10033 6.20974 6.22483 6.25088 6.59191 6.72515 6.91655 6.97020 7.75255 7.77828 7.87515 7.95259 8.08263 8.39444 8.75913 9.08932 9.63812 11.15689 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029591 B = 0.003077 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.990629 B = 9096.512366 C = 9496.206782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.458 5.458 3 C -0.063 4.063 4 C -0.028 4.028 5 N -0.484 5.484 6 C 0.218 3.782 7 C -0.015 4.015 8 H 0.084 0.916 9 C -0.103 4.103 10 C -0.135 4.135 11 C 0.106 3.894 12 N -0.624 5.624 13 C 0.513 3.487 14 O -0.535 6.535 15 C -0.128 4.128 16 C 0.037 3.963 17 C -0.526 4.526 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.126 3.874 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.022 0.978 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.075 0.925 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.730 17.107 16.671 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.140 5.140 3 C -0.196 4.196 4 C -0.177 4.177 5 N -0.202 5.202 6 C -0.045 4.045 7 C -0.036 4.036 8 H 0.103 0.897 9 C -0.141 4.141 10 C -0.173 4.173 11 C -0.017 4.017 12 N -0.360 5.360 13 C 0.304 3.696 14 O -0.410 6.410 15 C -0.168 4.168 16 C -0.001 4.001 17 C -0.564 4.564 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.002 3.998 26 H 0.096 0.904 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.190 0.810 30 H 0.186 0.814 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.979 16.923 15.922 23.992 hybrid contribution -1.028 -0.129 0.101 1.041 sum 4.951 16.794 16.023 23.734 Atomic orbital electron populations 1.22099 0.76628 1.05117 1.03648 1.45322 1.07651 1.06649 1.54426 1.22686 0.91446 0.92462 1.12962 1.22304 0.96361 0.91243 1.07759 1.70210 1.18328 1.11866 1.19836 1.23050 0.85828 0.90365 1.05235 1.20006 1.00340 0.85425 0.97847 0.89740 1.21533 1.01969 0.94918 0.95720 1.21948 1.01624 0.95438 0.98311 1.21740 1.00049 0.96058 0.83832 1.48295 1.58647 1.09553 1.19523 1.21612 0.75614 0.91060 0.81350 1.90656 1.52813 1.66641 1.30910 1.21881 1.01923 0.88973 1.03992 1.18908 0.95414 0.95430 0.90321 1.21220 1.36648 0.95033 1.03549 0.92602 1.25027 0.95946 0.98045 0.95386 1.70000 1.39481 1.36080 1.07296 0.86596 0.78748 0.85335 0.77294 1.20704 1.21237 1.19864 1.21368 1.00596 0.81134 0.96733 0.90428 0.89420 0.89100 0.80989 0.81365 0.91985 0.90400 0.91303 0.90259 0.88793 0.91409 0.90186 0.90245 0.95909 0.95823 0.92969 0.90686 0.89315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.83 59.85 0.65 1.10 16 2 N -0.46 -4.64 3.15 -121.28 -0.38 -5.02 16 3 C -0.06 -0.59 11.58 -16.56 -0.19 -0.78 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 5 N -0.48 -6.50 11.25 -10.82 -0.12 -6.62 16 6 C 0.22 2.65 6.43 -155.42 -1.00 1.65 16 7 C -0.01 -0.17 2.68 -91.49 -0.24 -0.42 16 8 H 0.08 0.93 6.73 -51.93 -0.35 0.58 16 9 C -0.10 -1.02 5.17 -26.53 -0.14 -1.15 16 10 C -0.13 -1.25 6.08 -26.62 -0.16 -1.41 16 11 C 0.11 1.21 6.34 -3.71 -0.02 1.19 16 12 N -0.62 -9.46 2.97 -172.77 -0.51 -9.97 16 13 C 0.51 10.16 7.70 -10.98 -0.08 10.07 16 14 O -0.53 -12.86 15.39 5.55 0.09 -12.77 16 15 C -0.13 -2.61 3.99 -27.88 -0.11 -2.72 16 16 C 0.04 0.99 4.26 -27.88 -0.12 0.88 16 17 C -0.53 -14.90 9.11 -34.44 -0.31 -15.22 16 18 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.49 13.29 55.43 0.74 -26.75 16 21 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 24 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 25 C 0.13 1.80 5.69 -3.71 -0.02 1.77 16 26 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.09 0.65 7.05 -51.93 -0.37 0.28 16 29 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.09 1.05 5.93 -51.93 -0.31 0.75 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 38 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 39 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 43 H 0.09 1.47 7.00 -51.93 -0.36 1.11 16 LS Contribution 349.95 15.07 5.27 5.27 Total: -1.00 -36.08 349.95 -8.82 -44.90 By element: Atomic # 1 Polarization: 5.14 SS G_CDS: -6.81 Total: -1.67 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: -2.07 Total: -3.98 kcal Atomic # 7 Polarization: -48.08 SS G_CDS: -0.28 Total: -48.36 kcal Atomic # 8 Polarization: -12.86 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.08 -8.82 -44.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360465092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.337 kcal (2) G-P(sol) polarization free energy of solvation -36.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds