Wall clock time and date at job start Tue Mar 31 2020 07:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36884 * 126.39658 * 2 1 4 4 C 1.34674 * 106.81616 * 180.25008 * 3 2 1 5 5 N 1.34132 * 108.01721 * 359.74179 * 4 3 2 6 6 C 1.30498 * 109.25934 * 0.02562 * 5 4 3 7 7 C 1.50698 * 125.64975 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.52461 * 179.97438 * 7 6 5 9 9 C 1.53346 * 109.68835 * 59.77128 * 7 6 5 10 10 C 1.53034 * 109.61010 * 178.74685 * 9 7 6 11 11 C 1.53188 * 109.31404 * 61.37429 * 10 9 7 12 12 N 1.46933 * 108.77495 * 305.36890 * 11 10 9 13 13 C 1.34780 * 120.62602 * 233.63137 * 12 11 10 14 14 O 1.21284 * 119.99750 * 179.97438 * 13 12 11 15 15 C 1.50698 * 120.00162 * 359.97327 * 13 12 11 16 16 C 1.53004 * 109.46896 * 180.02562 * 15 13 12 17 17 C 1.50698 * 109.46896 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00150 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00024 * 180.02562 * 17 16 15 20 20 N 1.31515 * 119.99903 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00351 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47455 * 89.99706 * 21 19 17 23 23 H 1.48497 * 109.47578 * 209.99942 * 21 19 17 24 24 H 1.48503 * 109.47036 * 329.99685 * 21 19 17 25 25 C 1.46919 * 118.74003 * 53.60503 * 12 11 10 26 26 H 1.08995 * 109.47125 * 270.19171 * 1 2 3 27 27 H 1.09003 * 109.46776 * 30.18799 * 1 2 3 28 28 H 1.08997 * 109.47243 * 150.18685 * 1 2 3 29 29 H 1.07997 * 126.59377 * 359.97438 * 3 2 1 30 30 H 1.07998 * 125.98958 * 179.72039 * 4 3 2 31 31 H 1.08999 * 109.41979 * 58.70908 * 9 7 6 32 32 H 1.09000 * 109.43268 * 298.79665 * 9 7 6 33 33 H 1.08994 * 109.50232 * 301.42239 * 10 9 7 34 34 H 1.09000 * 109.49784 * 181.32304 * 10 9 7 35 35 H 1.08994 * 109.59289 * 185.57924 * 11 10 9 36 36 H 1.09002 * 109.58818 * 65.14921 * 11 10 9 37 37 H 1.09000 * 109.47171 * 299.99537 * 15 13 12 38 38 H 1.08993 * 109.47429 * 60.00485 * 15 13 12 39 39 H 1.08999 * 109.47240 * 299.99805 * 16 15 13 40 40 H 1.09003 * 109.47483 * 59.99982 * 16 15 13 41 41 H 0.97000 * 120.00295 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.58751 * 66.18300 * 25 12 11 43 43 H 1.08996 * 109.58750 * 186.46484 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5461 0.6505 -0.0056 5 7 3.5095 -0.6903 -0.0032 6 6 2.2663 -1.0870 0.0031 7 6 1.8018 -2.5206 0.0082 8 1 0.7122 -2.5505 0.0136 9 6 2.3396 -3.2335 1.2548 10 6 1.8412 -4.6803 1.2742 11 6 2.3654 -5.4134 0.0355 12 7 1.9754 -4.6568 -1.1622 13 6 1.3082 -5.2580 -2.1672 14 8 0.9915 -4.6224 -3.1503 15 6 0.9558 -6.7199 -2.0692 16 6 0.2074 -7.1498 -3.3325 17 6 -0.1444 -8.6119 -3.2349 18 1 0.1379 -9.1780 -2.3595 19 6 -0.8259 -9.2272 -4.2635 20 7 -1.1693 -8.5380 -5.3296 21 14 -1.2614 -11.0397 -4.1428 22 1 -2.5937 -11.1872 -3.5037 23 1 -1.2972 -11.6319 -5.5041 24 1 -0.2395 -11.7409 -3.3247 25 6 2.3259 -3.2323 -1.2431 26 1 -0.3633 0.0034 1.0276 27 1 -0.3633 0.8883 -0.5168 28 1 -0.3633 -0.8916 -0.5109 29 1 1.9613 2.1345 -0.0004 30 1 4.4369 1.2611 -0.0114 31 1 1.9884 -2.7165 2.1478 32 1 3.4294 -3.2251 1.2356 33 1 0.7513 -4.6898 1.2685 34 1 2.2051 -5.1784 2.1728 35 1 1.9337 -6.4133 -0.0074 36 1 3.4519 -5.4841 0.0851 37 1 1.8684 -7.3078 -1.9703 38 1 0.3220 -6.8833 -1.1977 39 1 -0.7052 -6.5620 -3.4320 40 1 0.8415 -6.9865 -4.2039 41 1 -1.6491 -8.9707 -6.0532 42 1 3.4093 -3.1251 -1.2976 43 1 1.8703 -2.7937 -2.1308 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360465092.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:55 Heat of formation + Delta-G solvation = -10.588475 kcal Electronic energy + Delta-G solvation = -23247.776115 eV Core-core repulsion = 19906.453755 eV Total energy + Delta-G solvation = -3341.322360 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.11363 -41.14516 -38.51564 -35.60285 -34.95126 -34.49977 -32.98804 -32.54968 -29.60574 -28.06750 -27.75794 -26.17235 -24.77663 -23.38009 -22.60891 -21.85143 -20.33869 -19.75618 -18.84452 -18.06991 -17.60585 -16.93501 -16.61344 -16.54228 -16.36485 -15.75450 -15.25987 -15.17275 -14.71997 -14.56340 -14.39528 -14.22527 -14.18103 -13.79794 -13.72276 -13.59138 -13.37141 -13.18546 -12.80660 -12.46549 -12.33322 -11.95171 -11.93948 -11.89972 -11.65904 -11.49853 -11.28948 -10.95293 -10.69213 -10.56588 -10.55711 -9.73537 -9.28474 -8.16753 -6.30841 1.04887 1.43299 1.46157 1.57088 1.65728 1.81513 2.04158 2.19301 2.44444 3.16345 3.35878 3.59453 3.67722 3.89507 3.97268 4.03848 4.07159 4.15297 4.22512 4.34479 4.43767 4.50481 4.53677 4.56364 4.62119 4.66377 4.73744 4.80976 4.84087 4.97504 5.02305 5.09758 5.17170 5.33727 5.42180 5.49110 5.58030 5.63346 5.85131 5.86173 6.18361 6.19778 6.40004 6.87650 7.13521 7.24062 7.39498 8.96075 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029591 B = 0.003077 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.990629 B = 9096.512366 C = 9496.206782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.461 5.461 3 C -0.050 4.050 4 C -0.057 4.057 5 N -0.516 5.516 6 C 0.195 3.805 7 C -0.005 4.005 8 H 0.088 0.912 9 C -0.096 4.096 10 C -0.126 4.126 11 C 0.095 3.905 12 N -0.611 5.611 13 C 0.511 3.489 14 O -0.592 6.592 15 C -0.114 4.114 16 C 0.043 3.957 17 C -0.541 4.541 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.254 1.254 25 C 0.130 3.870 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.209 0.791 30 H 0.185 0.815 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.103 0.897 38 H 0.108 0.892 39 H -0.018 1.018 40 H -0.021 1.021 41 H 0.262 0.738 42 H 0.072 0.928 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.774 16.518 19.801 26.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.143 5.143 3 C -0.183 4.183 4 C -0.205 4.205 5 N -0.236 5.236 6 C -0.068 4.068 7 C -0.026 4.026 8 H 0.106 0.894 9 C -0.134 4.134 10 C -0.164 4.164 11 C -0.026 4.026 12 N -0.344 5.344 13 C 0.301 3.699 14 O -0.472 6.472 15 C -0.153 4.153 16 C 0.005 3.995 17 C -0.579 4.579 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.798 3.202 22 H -0.196 1.196 23 H -0.214 1.214 24 H -0.178 1.178 25 C 0.006 3.994 26 H 0.116 0.884 27 H 0.126 0.874 28 H 0.100 0.900 29 H 0.226 0.774 30 H 0.202 0.798 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.103 0.897 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.000 1.000 40 H -0.003 1.003 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.046 16.335 19.131 25.873 hybrid contribution -0.993 0.182 -0.872 1.334 sum 5.053 16.517 18.259 25.134 Atomic orbital electron populations 1.22339 0.74758 1.05729 1.05144 1.45569 1.08908 1.06327 1.53460 1.23271 0.90816 0.93687 1.10530 1.22755 0.98028 0.90782 1.08937 1.70130 1.19374 1.13386 1.20662 1.23030 0.86109 0.90935 1.06714 1.19887 1.00379 0.85439 0.96944 0.89407 1.21497 1.01486 0.95313 0.95136 1.21929 1.01607 0.94746 0.98124 1.22144 1.01361 0.96236 0.82894 1.48250 1.56561 1.10126 1.19456 1.21484 0.75946 0.90830 0.81597 1.90637 1.55574 1.67599 1.33436 1.21643 1.02543 0.89731 1.01418 1.18694 0.93604 0.95142 0.92037 1.21710 1.36290 0.95589 1.04261 0.90381 1.26153 0.95743 1.03808 0.94825 1.70186 1.40588 1.38686 1.08448 0.85313 0.79118 0.78348 0.77420 1.19605 1.21370 1.17783 1.21315 1.00105 0.80666 0.97285 0.88448 0.87358 0.90023 0.77446 0.79757 0.90602 0.91041 0.91276 0.87174 0.88002 0.89716 0.87874 0.87420 0.99968 1.00268 0.92905 0.91008 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.72 10.83 127.77 1.38 2.10 16 2 N -0.46 -8.72 3.15 -537.61 -1.69 -10.41 16 3 C -0.05 -0.84 11.58 83.09 0.96 0.12 16 4 C -0.06 -1.22 11.87 83.52 0.99 -0.23 16 5 N -0.52 -13.76 11.25 -188.13 -2.12 -15.88 16 6 C 0.19 4.65 6.43 138.13 0.89 5.54 16 7 C -0.01 -0.12 2.68 -11.36 -0.03 -0.15 16 8 H 0.09 1.89 6.73 -2.39 -0.02 1.88 16 9 C -0.10 -1.69 5.17 30.72 0.16 -1.53 16 10 C -0.13 -1.92 6.08 30.67 0.19 -1.74 16 11 C 0.09 1.93 6.34 86.36 0.55 2.48 16 12 N -0.61 -18.36 2.97 -818.91 -2.44 -20.80 16 13 C 0.51 20.78 7.70 87.66 0.67 21.45 16 14 O -0.59 -30.39 15.39 -3.04 -0.05 -30.44 16 15 C -0.11 -4.63 3.99 29.85 0.12 -4.51 16 16 C 0.04 2.41 4.26 29.85 0.13 2.54 16 17 C -0.54 -30.73 9.11 25.60 0.23 -30.49 16 18 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 19 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 20 N -0.94 -59.93 13.29 21.45 0.28 -59.65 16 21 Si 0.97 44.18 29.54 68.60 2.03 46.21 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 24 H -0.25 -10.65 7.11 99.48 0.71 -9.94 16 25 C 0.13 3.82 5.69 86.36 0.49 4.31 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 27 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.08 1.12 7.05 -2.39 -0.02 1.10 16 29 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.10 1.95 5.93 -2.39 -0.01 1.94 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.10 3.71 7.94 -2.39 -0.02 3.69 16 38 H 0.11 3.76 7.69 -2.39 -0.02 3.74 16 39 H -0.02 -1.15 8.10 -2.39 -0.02 -1.17 16 40 H -0.02 -1.36 8.10 -2.39 -0.02 -1.38 16 41 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 2.03 7.00 -2.39 -0.02 2.02 16 Total: -1.00 -83.35 349.95 4.20 -79.15 By element: Atomic # 1 Polarization: 10.94 SS G_CDS: 0.99 Total: 11.92 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: 7.20 Total: -0.11 kcal Atomic # 7 Polarization: -100.77 SS G_CDS: -5.96 Total: -106.73 kcal Atomic # 8 Polarization: -30.39 SS G_CDS: -0.05 Total: -30.44 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -83.35 4.20 -79.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360465092.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.560 kcal (2) G-P(sol) polarization free energy of solvation -83.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds