Wall clock time and date at job start Tue Mar 31 2020 07:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36885 * 126.39947 * 2 1 4 4 C 1.34664 * 106.82050 * 179.97438 * 3 2 1 5 5 N 1.34129 * 108.01991 * 359.77059 * 4 3 2 6 6 C 1.30503 * 109.25629 * 0.37718 * 5 4 3 7 7 C 1.50700 * 125.65003 * 179.89117 * 6 5 4 8 8 H 1.08994 * 109.49495 * 179.75051 * 7 6 5 9 9 C 1.53034 * 109.52573 * 299.83661 * 7 6 5 10 10 C 1.53346 * 109.61010 * 181.34079 * 9 7 6 11 11 C 1.53195 * 109.14901 * 298.71225 * 10 9 7 12 12 N 1.46919 * 108.89273 * 54.57640 * 11 10 9 13 13 C 1.34780 * 120.63395 * 126.29715 * 12 11 10 14 14 O 1.21281 * 120.00120 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.99750 * 0.02562 * 13 12 11 16 16 C 1.52992 * 109.47150 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47150 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00101 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00242 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00058 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47005 * 60.00478 * 21 19 17 23 23 H 1.48501 * 109.47041 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47532 * 300.00510 * 21 19 17 25 25 C 1.46933 * 118.74003 * 306.32349 * 12 11 10 26 26 H 1.09000 * 109.47295 * 270.03088 * 1 2 3 27 27 H 1.08998 * 109.47410 * 30.03160 * 1 2 3 28 28 H 1.09004 * 109.47090 * 150.02993 * 1 2 3 29 29 H 1.08002 * 126.58584 * 359.93567 * 3 2 1 30 30 H 1.08001 * 125.98838 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.45836 * 301.35501 * 9 7 6 32 32 H 1.09001 * 109.45754 * 61.32384 * 9 7 6 33 33 H 1.08997 * 109.68637 * 178.74435 * 10 9 7 34 34 H 1.09002 * 109.47277 * 58.54691 * 10 9 7 35 35 H 1.09002 * 109.58720 * 294.71670 * 11 10 9 36 36 H 1.08996 * 109.58651 * 174.43567 * 11 10 9 37 37 H 1.09003 * 109.46873 * 300.00082 * 15 13 12 38 38 H 1.09001 * 109.46886 * 59.99494 * 15 13 12 39 39 H 1.09003 * 109.47495 * 299.99939 * 16 15 13 40 40 H 1.09001 * 109.47444 * 60.00075 * 16 15 13 41 41 H 0.96990 * 120.00250 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.58580 * 173.39910 * 25 12 11 43 43 H 1.09006 * 109.57831 * 293.67403 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 0.0006 5 7 3.5095 -0.6903 0.0060 6 6 2.2663 -1.0870 0.0007 7 6 1.8018 -2.5206 0.0019 8 1 0.7123 -2.5500 0.0009 9 6 2.3331 -3.2314 -1.2449 10 6 1.8339 -4.6812 -1.2628 11 6 2.3640 -5.4106 -0.0243 12 7 1.9799 -4.6531 1.1746 13 6 1.3173 -5.2534 2.1831 14 8 1.0054 -4.6171 3.1674 15 6 0.9641 -6.7153 2.0878 16 6 0.2215 -7.1442 3.3549 17 6 -0.1312 -8.6063 3.2598 18 1 0.1461 -9.1728 2.3832 19 6 -0.8080 -9.2207 4.2921 20 7 -1.1462 -8.5308 5.3594 21 14 -1.2458 -11.0328 4.1739 22 1 -0.0035 -11.8339 4.0325 23 1 -1.9664 -11.4492 5.4038 24 1 -2.1159 -11.2559 2.9914 25 6 2.3312 -3.2286 1.2529 26 1 -0.3634 0.0006 1.0277 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3633 -0.8903 -0.5134 29 1 1.9612 2.1345 -0.0010 30 1 4.4368 1.2612 0.0003 31 1 1.9778 -2.7148 -2.1365 32 1 3.4230 -3.2235 -1.2307 33 1 2.1932 -5.1822 -2.1617 34 1 0.7440 -4.6904 -1.2517 35 1 3.4503 -5.4817 -0.0791 36 1 1.9343 -6.4111 0.0224 37 1 0.3261 -6.8791 1.2193 38 1 1.8760 -7.3035 1.9848 39 1 0.8598 -6.9805 4.2232 40 1 -0.6904 -6.5561 3.4583 41 1 -1.6226 -8.9629 6.0854 42 1 1.8778 -2.7888 2.1412 43 1 3.4148 -3.1219 1.3049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360465107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:59 Heat of formation + Delta-G solvation = 12.540298 kcal Electronic energy + Delta-G solvation = -23247.004049 eV Core-core repulsion = 19906.684627 eV Total energy + Delta-G solvation = -3340.319421 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.31999 -39.77490 -37.23096 -34.21902 -33.59059 -33.22092 -31.74392 -30.87603 -28.66659 -27.21936 -26.21527 -24.80936 -23.66383 -21.92197 -21.56910 -20.76078 -19.41769 -18.43827 -17.35088 -16.93068 -16.02822 -15.84772 -15.38774 -15.15579 -14.86934 -14.42862 -14.31070 -14.14968 -13.68250 -13.58606 -13.21839 -13.20812 -13.00874 -12.87084 -12.52274 -12.12468 -12.05435 -11.42919 -11.22577 -11.05494 -10.90935 -10.88686 -10.74666 -10.58617 -10.10078 -9.94021 -9.78653 -9.59232 -9.17060 -8.98941 -8.63223 -8.34530 -8.28036 -5.94980 -3.99435 1.83481 2.54166 2.97052 3.24233 3.30812 3.34912 3.39794 3.41646 4.19980 4.40631 4.47387 4.48818 4.67811 4.75862 4.82336 4.90593 4.97475 5.07091 5.18934 5.25897 5.33936 5.39794 5.41777 5.50796 5.59048 5.76585 5.79927 5.85295 5.89704 6.04792 6.10019 6.20966 6.22579 6.25168 6.59200 6.72661 6.91815 6.97005 7.75154 7.78060 7.87729 7.95257 8.08536 8.39638 8.76151 9.08973 9.63924 11.15995 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.003077 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.176725 B = 9098.324086 C = 9494.849164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.458 5.458 3 C -0.063 4.063 4 C -0.028 4.028 5 N -0.484 5.484 6 C 0.218 3.782 7 C -0.014 4.014 8 H 0.084 0.916 9 C -0.104 4.104 10 C -0.135 4.135 11 C 0.106 3.894 12 N -0.625 5.625 13 C 0.513 3.487 14 O -0.535 6.535 15 C -0.128 4.128 16 C 0.037 3.963 17 C -0.527 4.527 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C 0.126 3.874 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.173 0.827 30 H 0.169 0.831 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.022 0.978 41 H 0.261 0.739 42 H 0.089 0.911 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.644 17.096 -16.808 24.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.141 5.141 3 C -0.196 4.196 4 C -0.177 4.177 5 N -0.202 5.202 6 C -0.045 4.045 7 C -0.036 4.036 8 H 0.103 0.897 9 C -0.142 4.142 10 C -0.173 4.173 11 C -0.017 4.017 12 N -0.360 5.360 13 C 0.304 3.696 14 O -0.410 6.410 15 C -0.168 4.168 16 C 0.000 4.000 17 C -0.565 4.565 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.203 1.203 25 C 0.002 3.998 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.107 0.893 29 H 0.190 0.810 30 H 0.186 0.814 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.888 16.914 -16.054 24.052 hybrid contribution -1.016 -0.139 -0.096 1.030 sum 4.873 16.775 -16.150 23.790 Atomic orbital electron populations 1.22096 0.76631 1.04628 1.04113 1.45323 1.07648 1.06657 1.54423 1.22683 0.91443 0.92458 1.12972 1.22301 0.96359 0.91245 1.07763 1.70211 1.18324 1.11865 1.19838 1.23064 0.85831 0.90373 1.05247 1.19951 1.00353 0.85430 0.97830 0.89745 1.21542 1.02030 0.94933 0.95721 1.22007 1.01585 0.95422 0.98304 1.21730 1.00079 0.96050 0.83842 1.48295 1.58892 1.09567 1.19271 1.21610 0.75596 0.91064 0.81365 1.90656 1.52824 1.66592 1.30929 1.21882 1.01904 0.88980 1.04002 1.18900 0.95456 0.95412 0.90266 1.21186 1.36981 0.95043 1.03334 0.92653 1.25026 0.95915 0.98033 0.95400 1.69986 1.39650 1.36131 1.07102 0.86654 0.78562 0.85398 0.77323 1.20227 1.21308 1.20268 1.21366 1.00542 0.81124 0.96726 0.90101 0.89524 0.89338 0.80990 0.81366 0.91988 0.90385 0.90231 0.91319 0.91425 0.88817 0.90251 0.90191 0.95831 0.95910 0.92904 0.89305 0.90673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.45 10.83 59.85 0.65 1.10 16 2 N -0.46 -4.63 3.15 -121.28 -0.38 -5.02 16 3 C -0.06 -0.59 11.58 -16.56 -0.19 -0.78 16 4 C -0.03 -0.31 11.87 -17.81 -0.21 -0.52 16 5 N -0.48 -6.50 11.25 -10.82 -0.12 -6.62 16 6 C 0.22 2.64 6.42 -155.41 -1.00 1.65 16 7 C -0.01 -0.17 2.67 -91.66 -0.24 -0.41 16 8 H 0.08 0.93 6.73 -51.93 -0.35 0.59 16 9 C -0.10 -1.02 5.15 -26.53 -0.14 -1.16 16 10 C -0.13 -1.24 6.11 -26.45 -0.16 -1.40 16 11 C 0.11 1.21 6.33 -3.71 -0.02 1.19 16 12 N -0.62 -9.48 2.97 -172.77 -0.51 -10.00 16 13 C 0.51 10.18 7.70 -10.98 -0.08 10.09 16 14 O -0.53 -12.88 15.39 5.56 0.09 -12.79 16 15 C -0.13 -2.61 3.98 -27.89 -0.11 -2.73 16 16 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 17 C -0.53 -14.94 9.11 -34.44 -0.31 -15.26 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -27.52 13.29 55.43 0.74 -26.78 16 21 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.13 1.81 5.70 -3.71 -0.02 1.79 16 26 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.54 7.05 -51.93 -0.37 0.17 16 29 H 0.17 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.05 5.93 -51.93 -0.31 0.74 16 37 H 0.08 1.46 7.69 -51.93 -0.40 1.06 16 38 H 0.08 1.50 7.94 -51.93 -0.41 1.09 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 41 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 42 H 0.09 1.48 7.00 -51.93 -0.36 1.12 16 43 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 349.93 15.07 5.27 5.27 Total: -1.00 -36.11 349.93 -8.82 -44.93 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.81 Total: -1.66 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -2.07 Total: -3.97 kcal Atomic # 7 Polarization: -48.13 SS G_CDS: -0.28 Total: -48.41 kcal Atomic # 8 Polarization: -12.88 SS G_CDS: 0.09 Total: -12.79 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.11 -8.82 -44.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360465107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.468 kcal (2) G-P(sol) polarization free energy of solvation -36.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds