Wall clock time and date at job start Tue Mar 31 2020 07:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36885 * 126.39947 * 2 1 4 4 C 1.34664 * 106.82050 * 179.97438 * 3 2 1 5 5 N 1.34129 * 108.01991 * 359.77059 * 4 3 2 6 6 C 1.30503 * 109.25629 * 0.37718 * 5 4 3 7 7 C 1.50700 * 125.65003 * 179.89117 * 6 5 4 8 8 H 1.08994 * 109.49495 * 179.75051 * 7 6 5 9 9 C 1.53034 * 109.52573 * 299.83661 * 7 6 5 10 10 C 1.53346 * 109.61010 * 181.34079 * 9 7 6 11 11 C 1.53195 * 109.14901 * 298.71225 * 10 9 7 12 12 N 1.46919 * 108.89273 * 54.57640 * 11 10 9 13 13 C 1.34780 * 120.63395 * 126.29715 * 12 11 10 14 14 O 1.21281 * 120.00120 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.99750 * 0.02562 * 13 12 11 16 16 C 1.52992 * 109.47150 * 179.97438 * 15 13 12 17 17 C 1.50700 * 109.47150 * 180.02562 * 16 15 13 18 18 H 1.07996 * 120.00101 * 359.97438 * 17 16 15 19 19 C 1.37883 * 120.00242 * 179.97438 * 17 16 15 20 20 N 1.31515 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00058 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47005 * 60.00478 * 21 19 17 23 23 H 1.48501 * 109.47041 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47532 * 300.00510 * 21 19 17 25 25 C 1.46933 * 118.74003 * 306.32349 * 12 11 10 26 26 H 1.09000 * 109.47295 * 270.03088 * 1 2 3 27 27 H 1.08998 * 109.47410 * 30.03160 * 1 2 3 28 28 H 1.09004 * 109.47090 * 150.02993 * 1 2 3 29 29 H 1.08002 * 126.58584 * 359.93567 * 3 2 1 30 30 H 1.08001 * 125.98838 * 179.97438 * 4 3 2 31 31 H 1.08999 * 109.45836 * 301.35501 * 9 7 6 32 32 H 1.09001 * 109.45754 * 61.32384 * 9 7 6 33 33 H 1.08997 * 109.68637 * 178.74435 * 10 9 7 34 34 H 1.09002 * 109.47277 * 58.54691 * 10 9 7 35 35 H 1.09002 * 109.58720 * 294.71670 * 11 10 9 36 36 H 1.08996 * 109.58651 * 174.43567 * 11 10 9 37 37 H 1.09003 * 109.46873 * 300.00082 * 15 13 12 38 38 H 1.09001 * 109.46886 * 59.99494 * 15 13 12 39 39 H 1.09003 * 109.47495 * 299.99939 * 16 15 13 40 40 H 1.09001 * 109.47444 * 60.00075 * 16 15 13 41 41 H 0.96990 * 120.00250 * 179.97438 * 20 19 17 42 42 H 1.08994 * 109.58580 * 173.39910 * 25 12 11 43 43 H 1.09006 * 109.57831 * 293.67403 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2773 1.1018 0.0000 4 6 3.5460 0.6505 0.0006 5 7 3.5095 -0.6903 0.0060 6 6 2.2663 -1.0870 0.0007 7 6 1.8018 -2.5206 0.0019 8 1 0.7123 -2.5500 0.0009 9 6 2.3331 -3.2314 -1.2449 10 6 1.8339 -4.6812 -1.2628 11 6 2.3640 -5.4106 -0.0243 12 7 1.9799 -4.6531 1.1746 13 6 1.3173 -5.2534 2.1831 14 8 1.0054 -4.6171 3.1674 15 6 0.9641 -6.7153 2.0878 16 6 0.2215 -7.1442 3.3549 17 6 -0.1312 -8.6063 3.2598 18 1 0.1461 -9.1728 2.3832 19 6 -0.8080 -9.2207 4.2921 20 7 -1.1462 -8.5308 5.3594 21 14 -1.2458 -11.0328 4.1739 22 1 -0.0035 -11.8339 4.0325 23 1 -1.9664 -11.4492 5.4038 24 1 -2.1159 -11.2559 2.9914 25 6 2.3312 -3.2286 1.2529 26 1 -0.3634 0.0006 1.0277 27 1 -0.3634 0.8897 -0.5143 28 1 -0.3633 -0.8903 -0.5134 29 1 1.9612 2.1345 -0.0010 30 1 4.4368 1.2612 0.0003 31 1 1.9778 -2.7148 -2.1365 32 1 3.4230 -3.2235 -1.2307 33 1 2.1932 -5.1822 -2.1617 34 1 0.7440 -4.6904 -1.2517 35 1 3.4503 -5.4817 -0.0791 36 1 1.9343 -6.4111 0.0224 37 1 0.3261 -6.8791 1.2193 38 1 1.8760 -7.3035 1.9848 39 1 0.8598 -6.9805 4.2232 40 1 -0.6904 -6.5561 3.4583 41 1 -1.6226 -8.9629 6.0854 42 1 1.8778 -2.7888 2.1412 43 1 3.4148 -3.1219 1.3049 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360465107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:13:59 Heat of formation + Delta-G solvation = -10.536935 kcal Electronic energy + Delta-G solvation = -23248.004753 eV Core-core repulsion = 19906.684627 eV Total energy + Delta-G solvation = -3341.320125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.11567 -41.14517 -38.51693 -35.60260 -34.95177 -34.50811 -32.98507 -32.54043 -29.60685 -28.06517 -27.76052 -26.17077 -24.77390 -23.38498 -22.60810 -21.85122 -20.33886 -19.75730 -18.84413 -18.06974 -17.60254 -16.96142 -16.61387 -16.52502 -16.35494 -15.75697 -15.25028 -15.17519 -14.72045 -14.56930 -14.41304 -14.22265 -14.17673 -13.78843 -13.73002 -13.55810 -13.39113 -13.18846 -12.76727 -12.50239 -12.32899 -11.94995 -11.93423 -11.89640 -11.66469 -11.49799 -11.30643 -10.95130 -10.69278 -10.57136 -10.54833 -9.73354 -9.28737 -8.16599 -6.30848 1.04768 1.43255 1.47954 1.55541 1.65752 1.81528 2.04358 2.19194 2.44583 3.16340 3.35336 3.60067 3.67275 3.90597 3.97533 4.03931 4.08076 4.14911 4.21346 4.34205 4.43597 4.50505 4.53616 4.56608 4.62349 4.65921 4.73598 4.80937 4.83883 4.97728 5.02325 5.09770 5.17286 5.33626 5.42365 5.48921 5.57956 5.63308 5.85077 5.86111 6.18343 6.19803 6.40046 6.87486 7.13463 7.24081 7.39473 8.96063 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029617 B = 0.003077 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.176725 B = 9098.324086 C = 9494.849164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.461 5.461 3 C -0.050 4.050 4 C -0.057 4.057 5 N -0.516 5.516 6 C 0.195 3.805 7 C -0.005 4.005 8 H 0.088 0.912 9 C -0.097 4.097 10 C -0.126 4.126 11 C 0.095 3.905 12 N -0.611 5.611 13 C 0.511 3.489 14 O -0.592 6.592 15 C -0.114 4.114 16 C 0.043 3.957 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.262 1.262 23 H -0.289 1.289 24 H -0.260 1.260 25 C 0.131 3.869 26 H 0.077 0.923 27 H 0.115 0.885 28 H 0.093 0.907 29 H 0.209 0.791 30 H 0.185 0.815 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.084 0.916 36 H 0.101 0.899 37 H 0.108 0.892 38 H 0.103 0.897 39 H -0.021 1.021 40 H -0.018 1.018 41 H 0.262 0.738 42 H 0.056 0.944 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.661 16.466 -19.991 26.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 N -0.143 5.143 3 C -0.183 4.183 4 C -0.205 4.205 5 N -0.236 5.236 6 C -0.068 4.068 7 C -0.026 4.026 8 H 0.106 0.894 9 C -0.135 4.135 10 C -0.164 4.164 11 C -0.027 4.027 12 N -0.344 5.344 13 C 0.301 3.699 14 O -0.472 6.472 15 C -0.153 4.153 16 C 0.006 3.994 17 C -0.580 4.580 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.215 1.215 24 H -0.185 1.185 25 C 0.007 3.993 26 H 0.096 0.904 27 H 0.134 0.866 28 H 0.112 0.888 29 H 0.226 0.774 30 H 0.202 0.798 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.120 0.880 37 H 0.126 0.874 38 H 0.121 0.879 39 H -0.003 1.003 40 H 0.000 1.000 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.929 16.286 -19.317 25.953 hybrid contribution -0.969 0.183 0.896 1.333 sum 4.960 16.470 -18.421 25.203 Atomic orbital electron populations 1.22346 0.74762 1.06418 1.04499 1.45567 1.08904 1.06322 1.53467 1.23273 0.90826 0.93698 1.10518 1.22751 0.98025 0.90785 1.08935 1.70131 1.19380 1.13385 1.20658 1.23047 0.86116 0.90950 1.06694 1.19830 1.00395 0.85441 0.96927 0.89383 1.21505 1.01543 0.95331 0.95135 1.21990 1.01571 0.94729 0.98097 1.22135 1.01403 0.96224 0.82909 1.48249 1.56795 1.10137 1.19211 1.21484 0.75925 0.90833 0.81618 1.90637 1.55598 1.67554 1.33457 1.21643 1.02556 0.89736 1.01396 1.18686 0.93610 0.95130 0.92015 1.21686 1.36621 0.95605 1.04087 0.90375 1.26156 0.95701 1.03815 0.94826 1.70177 1.40762 1.38732 1.08241 0.85366 0.78829 0.78367 0.77640 1.18691 1.21488 1.18488 1.21314 1.00065 0.80660 0.97278 0.90397 0.86603 0.88792 0.77447 0.79761 0.90558 0.91044 0.87143 0.91266 0.89739 0.88031 0.87422 0.87871 1.00291 0.99977 0.92892 0.92525 0.90997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 10.83 127.77 1.38 2.10 16 2 N -0.46 -8.71 3.15 -537.61 -1.69 -10.41 16 3 C -0.05 -0.84 11.58 83.08 0.96 0.12 16 4 C -0.06 -1.22 11.87 83.52 0.99 -0.23 16 5 N -0.52 -13.76 11.25 -188.13 -2.12 -15.88 16 6 C 0.19 4.64 6.42 138.13 0.89 5.52 16 7 C 0.00 -0.11 2.67 -11.47 -0.03 -0.14 16 8 H 0.09 1.89 6.73 -2.39 -0.02 1.87 16 9 C -0.10 -1.70 5.15 30.72 0.16 -1.54 16 10 C -0.13 -1.91 6.11 30.78 0.19 -1.72 16 11 C 0.09 1.92 6.33 86.36 0.55 2.47 16 12 N -0.61 -18.38 2.97 -818.90 -2.44 -20.81 16 13 C 0.51 20.81 7.70 87.66 0.67 21.48 16 14 O -0.59 -30.45 15.39 -3.03 -0.05 -30.49 16 15 C -0.11 -4.63 3.98 29.85 0.12 -4.51 16 16 C 0.04 2.44 4.26 29.85 0.13 2.56 16 17 C -0.54 -30.84 9.11 25.60 0.23 -30.61 16 18 H 0.08 3.99 7.74 -2.91 -0.02 3.97 16 19 C -0.01 -0.45 5.46 84.66 0.46 0.02 16 20 N -0.94 -60.00 13.29 21.45 0.28 -59.72 16 21 Si 0.97 44.17 29.54 68.60 2.03 46.20 16 22 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 25 C 0.13 3.84 5.70 86.36 0.49 4.34 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.12 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.09 0.99 7.05 -2.38 -0.02 0.97 16 29 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 30 H 0.19 2.97 8.06 -2.91 -0.02 2.95 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.10 1.94 5.93 -2.39 -0.01 1.93 16 37 H 0.11 3.76 7.69 -2.39 -0.02 3.74 16 38 H 0.10 3.71 7.94 -2.39 -0.02 3.69 16 39 H -0.02 -1.37 8.10 -2.39 -0.02 -1.39 16 40 H -0.02 -1.16 8.10 -2.39 -0.02 -1.18 16 41 H 0.26 15.73 8.31 -92.72 -0.77 14.96 16 42 H 0.06 2.03 7.00 -2.39 -0.02 2.01 16 43 H 0.07 2.15 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -83.50 349.93 4.20 -79.30 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.99 Total: 11.95 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 7.19 Total: -0.14 kcal Atomic # 7 Polarization: -100.85 SS G_CDS: -5.96 Total: -106.81 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -0.05 Total: -30.49 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -83.50 4.20 -79.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360465107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.767 kcal (2) G-P(sol) polarization free energy of solvation -83.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds