Wall clock time and date at job start Tue Mar 31 2020 07:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40087 * 126.03732 * 2 1 4 4 C 1.30836 * 108.20236 * 180.23728 * 3 2 1 5 5 C 1.39872 * 108.20582 * 359.77177 * 4 3 2 6 6 C 1.34947 * 126.03602 * 179.84181 * 2 1 3 7 7 C 1.50698 * 126.12554 * 0.03851 * 6 2 1 8 8 H 1.09000 * 109.52680 * 334.63044 * 7 6 2 9 9 C 1.53043 * 109.49722 * 214.54631 * 7 6 2 10 10 C 1.53037 * 109.53919 * 178.68474 * 9 7 6 11 11 C 1.53191 * 109.31499 * 61.36673 * 10 9 7 12 12 N 1.46925 * 108.77423 * 305.36620 * 11 10 9 13 13 C 1.34779 * 120.63076 * 233.58539 * 12 11 10 14 14 O 1.21283 * 119.99759 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00151 * 0.02562 * 13 12 11 16 16 C 1.53000 * 109.47281 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.46759 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99612 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00159 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47109 * 89.99922 * 21 19 17 23 23 H 1.48498 * 109.47535 * 209.99902 * 21 19 17 24 24 H 1.48499 * 109.46990 * 330.00329 * 21 19 17 25 25 C 1.46926 * 118.73914 * 53.60547 * 12 11 10 26 26 H 1.09007 * 109.46595 * 270.15579 * 1 2 3 27 27 H 1.08999 * 109.47041 * 30.15448 * 1 2 3 28 28 H 1.08988 * 109.47366 * 150.15767 * 1 2 3 29 29 H 1.07998 * 125.89760 * 179.74585 * 4 3 2 30 30 H 1.07991 * 126.03980 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.45405 * 58.66267 * 9 7 6 32 32 H 1.09002 * 109.44862 * 298.69889 * 9 7 6 33 33 H 1.08997 * 109.49928 * 301.41588 * 10 9 7 34 34 H 1.09005 * 109.52588 * 181.33557 * 10 9 7 35 35 H 1.08998 * 109.59071 * 185.58119 * 11 10 9 36 36 H 1.09005 * 109.58843 * 65.15147 * 11 10 9 37 37 H 1.09003 * 109.47023 * 300.00663 * 15 13 12 38 38 H 1.09004 * 109.46964 * 59.99901 * 15 13 12 39 39 H 1.08998 * 109.46966 * 299.99967 * 16 15 13 40 40 H 1.08996 * 109.46665 * 60.00205 * 16 15 13 41 41 H 0.96998 * 120.00148 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.58406 * 66.18027 * 25 12 11 43 43 H 1.09002 * 109.59019 * 186.60016 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 -0.0051 5 6 3.5437 -0.6666 -0.0033 6 6 2.2589 -1.0912 0.0030 7 6 1.7973 -2.5258 0.0062 8 1 0.8018 -2.5872 0.4459 9 6 2.7715 -3.3741 0.8268 10 6 2.2859 -4.8250 0.8579 11 6 2.2485 -5.3776 -0.5704 12 7 1.4294 -4.4848 -1.4014 13 6 0.3997 -4.9708 -2.1226 14 8 -0.2687 -4.2235 -2.8051 15 6 0.0788 -6.4426 -2.0809 16 6 -1.1246 -6.7280 -2.9815 17 6 -1.4458 -8.1998 -2.9392 18 1 -0.8513 -8.8650 -2.3305 19 6 -2.4986 -8.6971 -3.6777 20 7 -3.2222 -7.8872 -4.4194 21 14 -2.8964 -10.5215 -3.6260 22 1 -3.8636 -10.7863 -2.5307 23 1 -3.4909 -10.9356 -4.9222 24 1 -1.6508 -11.2930 -3.3836 25 6 1.7544 -3.0523 -1.4318 26 1 -0.3633 0.0028 1.0278 27 1 -0.3633 0.8886 -0.5162 28 1 -0.3633 -0.8913 -0.5113 29 1 4.4054 1.3710 -0.0104 30 1 4.4211 -1.2963 -0.0068 31 1 2.8225 -2.9862 1.8442 32 1 3.7613 -3.3321 0.3721 33 1 1.2859 -4.8648 1.2897 34 1 2.9671 -5.4243 1.4621 35 1 1.8104 -6.3756 -0.5647 36 1 3.2611 -5.4230 -0.9713 37 1 0.9390 -7.0121 -2.4330 38 1 -0.1557 -6.7345 -1.0572 39 1 -1.9848 -6.1585 -2.6298 40 1 -0.8896 -6.4362 -4.0051 41 1 -3.9626 -8.2371 -4.9392 42 1 2.7267 -2.9081 -1.9029 43 1 0.9903 -2.5160 -1.9946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360585520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:35 Heat of formation + Delta-G solvation = 26.660649 kcal Electronic energy + Delta-G solvation = -23268.499836 eV Core-core repulsion = 19928.792719 eV Total energy + Delta-G solvation = -3339.707117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.54186 -39.81297 -37.33868 -33.83676 -33.47590 -33.20536 -31.80474 -30.97107 -28.88682 -26.89114 -26.26838 -24.92150 -23.64828 -22.07065 -21.33954 -20.68361 -19.40055 -18.53515 -17.22793 -16.78638 -15.92084 -15.85765 -15.30523 -15.19693 -14.75525 -14.48336 -14.41035 -14.27301 -13.75855 -13.33680 -13.23607 -13.07528 -12.90059 -12.58979 -12.50966 -12.17016 -12.11606 -11.49610 -11.35645 -11.15872 -11.03952 -10.94542 -10.81292 -10.66415 -10.59098 -9.98993 -9.63852 -9.47490 -9.21156 -9.03348 -8.71430 -8.45688 -8.33379 -5.98145 -4.02716 1.68267 2.34768 2.66952 3.15556 3.20607 3.31593 3.38067 3.40467 4.24851 4.37668 4.44796 4.51783 4.64606 4.83349 4.91915 4.98215 5.00262 5.08567 5.20115 5.28667 5.32006 5.36875 5.46255 5.47588 5.58537 5.65038 5.68580 5.69618 5.80053 5.91150 5.99968 6.14143 6.16820 6.18888 6.49476 6.63577 6.83068 6.86703 7.55583 7.68497 7.72018 7.83321 8.04650 8.35749 8.68196 9.05640 9.60979 11.12795 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029524 B = 0.003125 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.162087 B = 8958.384609 C = 9547.255464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.370 5.370 3 N -0.301 5.301 4 C 0.044 3.956 5 C -0.271 4.271 6 C 0.098 3.902 7 C -0.040 4.040 8 H 0.085 0.915 9 C -0.104 4.104 10 C -0.136 4.136 11 C 0.106 3.894 12 N -0.625 5.625 13 C 0.513 3.487 14 O -0.534 6.534 15 C -0.128 4.128 16 C 0.037 3.963 17 C -0.527 4.527 18 H 0.056 0.944 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.281 1.281 23 H -0.286 1.286 24 H -0.274 1.274 25 C 0.123 3.877 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.182 0.818 30 H 0.146 0.854 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.068 0.932 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.811 11.842 13.040 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.152 5.152 3 N -0.122 5.122 4 C -0.142 4.142 5 C -0.300 4.300 6 C -0.031 4.031 7 C -0.062 4.062 8 H 0.103 0.897 9 C -0.142 4.142 10 C -0.174 4.174 11 C -0.017 4.017 12 N -0.361 5.361 13 C 0.304 3.696 14 O -0.409 6.409 15 C -0.168 4.168 16 C -0.001 4.001 17 C -0.565 4.565 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.212 1.212 24 H -0.199 1.199 25 C 0.000 4.000 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.109 0.891 29 H 0.199 0.801 30 H 0.164 0.836 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.315 13.266 12.514 22.581 hybrid contribution 0.311 -1.577 0.078 1.609 sum 13.626 11.689 12.593 21.929 Atomic orbital electron populations 1.21921 0.74230 1.05008 1.03424 1.48534 1.06628 1.03346 1.56646 1.77365 1.01894 1.07988 1.24948 1.23813 0.95201 0.95114 1.00025 1.21198 0.96194 0.94883 1.17726 1.20943 0.91325 0.89798 1.01005 1.20212 1.00590 0.87334 0.98034 0.89680 1.21512 0.98459 0.94385 0.99860 1.21953 1.02498 0.95885 0.97090 1.21746 0.95645 0.94501 0.89803 1.48295 1.32669 1.07273 1.47814 1.21635 0.77979 0.92363 0.77627 1.90659 1.49347 1.60417 1.40494 1.21888 1.02904 0.88808 1.03169 1.18907 0.90700 0.96082 0.94362 1.21210 1.14418 0.93275 1.27635 0.92605 1.25025 0.96230 0.97763 0.95360 1.69995 1.19334 1.34699 1.28791 0.86594 0.78534 0.85452 0.77384 1.20679 1.21217 1.19866 1.21404 1.02008 0.82346 0.94281 0.90713 0.89084 0.89070 0.80132 0.83580 0.91339 0.90939 0.91194 0.90219 0.88745 0.91495 0.90188 0.90210 0.95900 0.95837 0.92935 0.91372 0.89208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.07 59.85 0.66 1.55 16 2 N -0.37 -4.37 4.01 -63.88 -0.26 -4.63 16 3 N -0.30 -3.84 12.58 30.62 0.39 -3.45 16 4 C 0.04 0.46 12.03 -17.36 -0.21 0.25 16 5 C -0.27 -2.73 9.98 -40.01 -0.40 -3.13 16 6 C 0.10 1.07 5.86 -82.26 -0.48 0.59 16 7 C -0.04 -0.41 2.34 -91.65 -0.21 -0.63 16 8 H 0.08 0.91 7.51 -51.93 -0.39 0.52 16 9 C -0.10 -0.84 4.72 -26.69 -0.13 -0.97 16 10 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 11 C 0.11 1.09 6.34 -3.71 -0.02 1.07 16 12 N -0.62 -8.74 2.97 -172.77 -0.51 -9.25 16 13 C 0.51 9.73 7.70 -10.99 -0.08 9.64 16 14 O -0.53 -12.37 15.40 5.55 0.09 -12.29 16 15 C -0.13 -2.53 3.99 -27.88 -0.11 -2.65 16 16 C 0.04 0.98 4.26 -27.88 -0.12 0.86 16 17 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 18 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 21 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 25 C 0.12 1.56 5.70 -3.71 -0.02 1.53 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.09 0.84 7.55 -51.94 -0.39 0.44 16 29 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.15 1.17 7.40 -52.49 -0.39 0.78 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.53 7.35 -51.93 -0.38 0.15 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.98 5.93 -51.93 -0.31 0.68 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 38 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 39 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.35 7.01 -51.93 -0.36 0.99 16 LS Contribution 349.42 15.07 5.27 5.27 Total: -1.00 -35.25 349.42 -7.82 -43.07 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -6.80 Total: -1.99 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.70 Total: -6.64 kcal Atomic # 7 Polarization: -44.19 SS G_CDS: 0.35 Total: -43.83 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.09 Total: -12.29 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -35.25 -7.82 -43.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360585520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.733 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds