Wall clock time and date at job start Tue Mar 31 2020 07:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40087 * 126.03732 * 2 1 4 4 C 1.30836 * 108.20236 * 180.23728 * 3 2 1 5 5 C 1.39872 * 108.20582 * 359.77177 * 4 3 2 6 6 C 1.34947 * 126.03602 * 179.84181 * 2 1 3 7 7 C 1.50698 * 126.12554 * 0.03851 * 6 2 1 8 8 H 1.09000 * 109.52680 * 334.63044 * 7 6 2 9 9 C 1.53043 * 109.49722 * 214.54631 * 7 6 2 10 10 C 1.53037 * 109.53919 * 178.68474 * 9 7 6 11 11 C 1.53191 * 109.31499 * 61.36673 * 10 9 7 12 12 N 1.46925 * 108.77423 * 305.36620 * 11 10 9 13 13 C 1.34779 * 120.63076 * 233.58539 * 12 11 10 14 14 O 1.21283 * 119.99759 * 180.02562 * 13 12 11 15 15 C 1.50696 * 120.00151 * 0.02562 * 13 12 11 16 16 C 1.53000 * 109.47281 * 180.02562 * 15 13 12 17 17 C 1.50706 * 109.46759 * 180.02562 * 16 15 13 18 18 H 1.08000 * 120.00066 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99612 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00159 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00150 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47109 * 89.99922 * 21 19 17 23 23 H 1.48498 * 109.47535 * 209.99902 * 21 19 17 24 24 H 1.48499 * 109.46990 * 330.00329 * 21 19 17 25 25 C 1.46926 * 118.73914 * 53.60547 * 12 11 10 26 26 H 1.09007 * 109.46595 * 270.15579 * 1 2 3 27 27 H 1.08999 * 109.47041 * 30.15448 * 1 2 3 28 28 H 1.08988 * 109.47366 * 150.15767 * 1 2 3 29 29 H 1.07998 * 125.89760 * 179.74585 * 4 3 2 30 30 H 1.07991 * 126.03980 * 179.97438 * 5 4 3 31 31 H 1.08997 * 109.45405 * 58.66267 * 9 7 6 32 32 H 1.09002 * 109.44862 * 298.69889 * 9 7 6 33 33 H 1.08997 * 109.49928 * 301.41588 * 10 9 7 34 34 H 1.09005 * 109.52588 * 181.33557 * 10 9 7 35 35 H 1.08998 * 109.59071 * 185.58119 * 11 10 9 36 36 H 1.09005 * 109.58843 * 65.15147 * 11 10 9 37 37 H 1.09003 * 109.47023 * 300.00663 * 15 13 12 38 38 H 1.09004 * 109.46964 * 59.99901 * 15 13 12 39 39 H 1.08998 * 109.46966 * 299.99967 * 16 15 13 40 40 H 1.08996 * 109.46665 * 60.00205 * 16 15 13 41 41 H 0.96998 * 120.00148 * 179.97438 * 20 19 17 42 42 H 1.09006 * 109.58406 * 66.18027 * 25 12 11 43 43 H 1.09002 * 109.59019 * 186.60016 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7321 -0.0051 5 6 3.5437 -0.6666 -0.0033 6 6 2.2589 -1.0912 0.0030 7 6 1.7973 -2.5258 0.0062 8 1 0.8018 -2.5872 0.4459 9 6 2.7715 -3.3741 0.8268 10 6 2.2859 -4.8250 0.8579 11 6 2.2485 -5.3776 -0.5704 12 7 1.4294 -4.4848 -1.4014 13 6 0.3997 -4.9708 -2.1226 14 8 -0.2687 -4.2235 -2.8051 15 6 0.0788 -6.4426 -2.0809 16 6 -1.1246 -6.7280 -2.9815 17 6 -1.4458 -8.1998 -2.9392 18 1 -0.8513 -8.8650 -2.3305 19 6 -2.4986 -8.6971 -3.6777 20 7 -3.2222 -7.8872 -4.4194 21 14 -2.8964 -10.5215 -3.6260 22 1 -3.8636 -10.7863 -2.5307 23 1 -3.4909 -10.9356 -4.9222 24 1 -1.6508 -11.2930 -3.3836 25 6 1.7544 -3.0523 -1.4318 26 1 -0.3633 0.0028 1.0278 27 1 -0.3633 0.8886 -0.5162 28 1 -0.3633 -0.8913 -0.5113 29 1 4.4054 1.3710 -0.0104 30 1 4.4211 -1.2963 -0.0068 31 1 2.8225 -2.9862 1.8442 32 1 3.7613 -3.3321 0.3721 33 1 1.2859 -4.8648 1.2897 34 1 2.9671 -5.4243 1.4621 35 1 1.8104 -6.3756 -0.5647 36 1 3.2611 -5.4230 -0.9713 37 1 0.9390 -7.0121 -2.4330 38 1 -0.1557 -6.7345 -1.0572 39 1 -1.9848 -6.1585 -2.6298 40 1 -0.8896 -6.4362 -4.0051 41 1 -3.9626 -8.2371 -4.9392 42 1 2.7267 -2.9081 -1.9029 43 1 0.9903 -2.5160 -1.9946 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360585520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:34 Heat of formation + Delta-G solvation = 3.805339 kcal Electronic energy + Delta-G solvation = -23269.490917 eV Core-core repulsion = 19928.792719 eV Total energy + Delta-G solvation = -3340.698198 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.36668 -41.07727 -38.52291 -35.61077 -34.76205 -34.10055 -32.98285 -32.55064 -29.86747 -27.95058 -27.65811 -26.17401 -24.70632 -23.40107 -22.53724 -21.63896 -20.27435 -19.75352 -18.85059 -17.89100 -17.49585 -16.93517 -16.60404 -16.44691 -16.24069 -15.59549 -15.34334 -15.16816 -14.71269 -14.62635 -14.29611 -14.18161 -14.00780 -13.74197 -13.67393 -13.36081 -13.28159 -13.18964 -12.81392 -12.47702 -12.29203 -12.07006 -11.92329 -11.90420 -11.61898 -11.54032 -11.42927 -11.29596 -10.69360 -10.56535 -10.31729 -9.67070 -9.44457 -8.17556 -6.31679 0.85114 1.42859 1.45523 1.56398 1.57414 1.67262 1.88619 2.06048 2.43745 3.15650 3.45026 3.59793 3.66368 3.81793 3.98465 4.08163 4.16229 4.24724 4.27829 4.30163 4.44146 4.50926 4.53220 4.55360 4.61121 4.70040 4.81634 4.83495 4.88974 4.93127 5.03250 5.15809 5.20501 5.26119 5.45936 5.48671 5.59758 5.62631 5.75842 5.85389 6.04061 6.17627 6.39479 6.75052 6.87008 7.24615 7.38842 8.95190 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029524 B = 0.003125 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.162087 B = 8958.384609 C = 9547.255464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.384 5.384 3 N -0.337 5.337 4 C 0.041 3.959 5 C -0.268 4.268 6 C 0.086 3.914 7 C -0.029 4.029 8 H 0.074 0.926 9 C -0.099 4.099 10 C -0.129 4.129 11 C 0.095 3.905 12 N -0.610 5.610 13 C 0.510 3.490 14 O -0.592 6.592 15 C -0.114 4.114 16 C 0.043 3.957 17 C -0.541 4.541 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.253 1.253 25 C 0.124 3.876 26 H 0.089 0.911 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.211 0.789 30 H 0.172 0.828 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.059 0.941 34 H 0.111 0.889 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.105 0.895 39 H -0.020 1.020 40 H -0.020 1.020 41 H 0.262 0.738 42 H 0.083 0.917 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.649 10.103 15.296 25.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.167 5.167 3 N -0.159 5.159 4 C -0.144 4.144 5 C -0.297 4.297 6 C -0.043 4.043 7 C -0.050 4.050 8 H 0.092 0.908 9 C -0.137 4.137 10 C -0.167 4.167 11 C -0.027 4.027 12 N -0.344 5.344 13 C 0.301 3.699 14 O -0.472 6.472 15 C -0.154 4.154 16 C 0.005 3.995 17 C -0.579 4.579 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.797 3.203 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.177 1.177 25 C 0.001 3.999 26 H 0.108 0.892 27 H 0.112 0.888 28 H 0.103 0.897 29 H 0.228 0.772 30 H 0.189 0.811 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.078 0.922 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.122 0.878 38 H 0.123 0.877 39 H -0.001 1.001 40 H -0.002 1.002 41 H 0.071 0.929 42 H 0.101 0.899 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 16.218 11.523 14.830 24.814 hybrid contribution -0.511 -0.955 -0.620 1.248 sum 15.707 10.568 14.210 23.671 Atomic orbital electron populations 1.21999 0.73719 1.04808 1.04324 1.48760 1.07266 1.03551 1.57099 1.77323 1.03094 1.09003 1.26492 1.24407 0.95347 0.95961 0.98638 1.21548 0.96522 0.95031 1.16615 1.21168 0.91856 0.89794 1.01460 1.20099 1.01040 0.87510 0.96362 0.90761 1.21534 0.98345 0.93687 1.00088 1.21939 1.02861 0.96235 0.95670 1.22162 0.96044 0.93834 0.90610 1.48240 1.31126 1.08522 1.46482 1.21447 0.78852 0.91752 0.77893 1.90641 1.51845 1.61384 1.43369 1.21634 1.00717 0.90136 1.02890 1.18691 0.92140 0.95371 0.93283 1.21713 1.14602 0.94009 1.27544 0.90396 1.26149 0.96088 1.03501 0.94784 1.70183 1.20163 1.37503 1.30053 0.85322 0.79025 0.78561 0.77353 1.19703 1.21364 1.17705 1.21453 1.01391 0.81097 0.95956 0.89248 0.88831 0.89745 0.77226 0.81060 0.90162 0.89207 0.92245 0.87050 0.88563 0.88908 0.87781 0.87707 1.00125 1.00189 0.92910 0.89879 0.92565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.79 11.07 127.77 1.41 3.20 16 2 N -0.38 -9.06 4.01 -356.03 -1.43 -10.48 16 3 N -0.34 -8.44 12.58 -57.02 -0.72 -9.15 16 4 C 0.04 0.79 12.03 85.24 1.02 1.81 16 5 C -0.27 -4.74 9.98 21.99 0.22 -4.52 16 6 C 0.09 1.76 5.86 41.40 0.24 2.01 16 7 C -0.03 -0.55 2.34 -11.46 -0.03 -0.58 16 8 H 0.07 1.57 7.51 -2.39 -0.02 1.55 16 9 C -0.10 -1.23 4.72 30.62 0.14 -1.09 16 10 C -0.13 -1.60 6.08 30.67 0.19 -1.42 16 11 C 0.09 1.62 6.34 86.36 0.55 2.17 16 12 N -0.61 -16.47 2.97 -818.89 -2.43 -18.90 16 13 C 0.51 19.78 7.70 87.66 0.67 20.45 16 14 O -0.59 -29.33 15.40 -3.04 -0.05 -29.37 16 15 C -0.11 -4.51 3.99 29.85 0.12 -4.39 16 16 C 0.04 2.37 4.26 29.85 0.13 2.50 16 17 C -0.54 -30.43 9.11 25.60 0.23 -30.20 16 18 H 0.08 3.95 7.74 -2.91 -0.02 3.92 16 19 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 20 N -0.94 -59.58 13.29 21.45 0.28 -59.29 16 21 Si 0.97 43.84 29.54 68.60 2.03 45.87 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.25 -10.50 7.11 99.48 0.71 -9.80 16 25 C 0.12 3.08 5.70 86.36 0.49 3.57 16 26 H 0.09 1.40 8.14 -2.38 -0.02 1.39 16 27 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.08 1.71 7.55 -2.39 -0.02 1.69 16 29 H 0.21 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.17 2.04 7.40 -2.92 -0.02 2.02 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.09 0.87 7.35 -2.39 -0.02 0.85 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.10 1.66 5.93 -2.39 -0.01 1.64 16 36 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.10 3.59 7.94 -2.39 -0.02 3.57 16 38 H 0.10 3.59 7.69 -2.38 -0.02 3.57 16 39 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 40 H -0.02 -1.29 8.10 -2.39 -0.02 -1.31 16 41 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 42 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 43 H 0.06 1.79 7.01 -2.39 -0.02 1.77 16 Total: -1.00 -81.58 349.42 4.53 -77.04 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: 0.99 Total: 10.76 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 5.86 Total: -6.47 kcal Atomic # 7 Polarization: -93.54 SS G_CDS: -4.29 Total: -97.83 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.37 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -81.58 4.53 -77.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360585520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.849 kcal (2) G-P(sol) polarization free energy of solvation -81.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds