Wall clock time and date at job start Tue Mar 31 2020 07:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40086 * 126.03094 * 2 1 4 4 C 1.30838 * 108.20070 * 180.23169 * 3 2 1 5 5 C 1.39872 * 108.20568 * 359.78594 * 4 3 2 6 6 C 1.34946 * 126.04126 * 179.85000 * 2 1 3 7 7 C 1.50695 * 126.12245 * 0.03313 * 6 2 1 8 8 H 1.08999 * 109.52668 * 24.63462 * 7 6 2 9 9 C 1.53042 * 109.49562 * 144.71554 * 7 6 2 10 10 C 1.53041 * 109.53960 * 181.31319 * 9 7 6 11 11 C 1.53192 * 109.31398 * 298.63476 * 10 9 7 12 12 N 1.46923 * 108.77488 * 54.63654 * 11 10 9 13 13 C 1.34777 * 120.63277 * 126.36543 * 12 11 10 14 14 O 1.21283 * 119.99750 * 179.97438 * 13 12 11 15 15 C 1.50694 * 120.00104 * 0.02562 * 13 12 11 16 16 C 1.53004 * 109.47175 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46843 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00516 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99783 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99707 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99956 * 180.27458 * 19 17 16 22 22 H 1.48497 * 109.47172 * 179.72730 * 21 19 17 23 23 H 1.48506 * 109.47132 * 299.72429 * 21 19 17 24 24 H 1.48501 * 109.47173 * 59.72550 * 21 19 17 25 25 C 1.46929 * 118.73572 * 306.64213 * 12 11 10 26 26 H 1.09003 * 109.47022 * 270.14617 * 1 2 3 27 27 H 1.09002 * 109.47561 * 30.15237 * 1 2 3 28 28 H 1.09003 * 109.46635 * 150.15441 * 1 2 3 29 29 H 1.08000 * 125.89973 * 179.73996 * 4 3 2 30 30 H 1.07995 * 126.04233 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.46026 * 61.29732 * 9 7 6 32 32 H 1.08996 * 109.46226 * 301.33408 * 9 7 6 33 33 H 1.08998 * 109.49643 * 178.68314 * 10 9 7 34 34 H 1.09000 * 109.52502 * 58.60340 * 10 9 7 35 35 H 1.08998 * 109.58850 * 294.84743 * 11 10 9 36 36 H 1.08998 * 109.58605 * 174.42050 * 11 10 9 37 37 H 1.09006 * 109.46887 * 59.99757 * 15 13 12 38 38 H 1.08997 * 109.46876 * 299.99806 * 15 13 12 39 39 H 1.09001 * 109.46361 * 60.00344 * 16 15 13 40 40 H 1.08997 * 109.46991 * 300.00234 * 16 15 13 41 41 H 0.97005 * 119.99656 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58730 * 173.14629 * 25 12 11 43 43 H 1.09001 * 109.58886 * 293.56780 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5346 0.7323 -0.0050 5 6 3.5438 -0.6664 -0.0034 6 6 2.2590 -1.0912 0.0029 7 6 1.7974 -2.5257 0.0059 8 1 0.7971 -2.5874 -0.4226 9 6 2.7624 -3.3745 -0.8251 10 6 2.2766 -4.8255 -0.8497 11 6 2.2553 -5.3771 0.5793 12 7 1.4455 -4.4838 1.4189 13 6 0.4234 -4.9692 2.1512 14 8 -0.2373 -4.2215 2.8406 15 6 0.1023 -6.4411 2.1142 16 6 -1.0917 -6.7257 3.0276 17 6 -1.4124 -8.1977 2.9910 18 1 -0.8238 -8.8636 2.3774 19 6 -2.4580 -8.6943 3.7403 20 7 -3.1757 -7.8832 4.4864 21 14 -2.8507 -10.5201 3.7009 22 1 -4.0065 -10.7971 4.5911 23 1 -3.1874 -10.9242 2.3122 24 1 -1.6702 -11.2905 4.1682 25 6 1.7672 -3.0504 1.4403 26 1 -0.3633 0.0026 1.0277 27 1 -0.3634 0.8886 -0.5162 28 1 -0.3633 -0.8914 -0.5115 29 1 4.4053 1.3712 -0.0103 30 1 4.4211 -1.2961 -0.0069 31 1 3.7573 -3.3322 -0.3817 32 1 2.8020 -2.9875 -1.8432 33 1 2.9515 -5.4248 -1.4609 34 1 1.2719 -4.8662 -1.2704 35 1 3.2723 -5.4222 0.9688 36 1 1.8173 -6.3751 0.5793 37 1 0.9661 -7.0101 2.4579 38 1 -0.1429 -6.7339 1.0933 39 1 -1.9556 -6.1566 2.6841 40 1 -0.8462 -6.4329 4.0484 41 1 -3.9115 -8.2326 5.0132 42 1 1.0072 -2.5137 2.0082 43 1 2.7436 -2.9018 1.9014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360585521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:39 Heat of formation + Delta-G solvation = 27.054737 kcal Electronic energy + Delta-G solvation = -23266.310501 eV Core-core repulsion = 19926.620473 eV Total energy + Delta-G solvation = -3339.690028 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.54677 -39.81492 -37.34492 -33.84214 -33.47675 -33.20256 -31.81221 -30.96884 -28.89391 -26.89331 -26.26543 -24.92406 -23.65142 -22.06896 -21.34364 -20.68452 -19.39084 -18.53817 -17.23172 -16.79049 -15.91987 -15.87933 -15.29142 -15.17335 -14.75550 -14.48524 -14.41761 -14.27376 -13.75684 -13.37159 -13.23840 -13.07965 -12.87205 -12.60448 -12.51424 -12.16686 -12.11216 -11.48284 -11.34831 -11.16112 -11.03689 -10.92787 -10.80385 -10.67546 -10.60547 -9.98304 -9.63554 -9.47837 -9.21415 -9.03582 -8.71082 -8.45440 -8.32941 -5.97837 -4.02464 1.68674 2.34298 2.66908 3.15963 3.20955 3.32828 3.37898 3.39420 4.24908 4.37364 4.44896 4.49613 4.63617 4.84281 4.90239 4.97534 5.01730 5.09693 5.19122 5.29116 5.32701 5.37049 5.46725 5.47767 5.58057 5.65527 5.68742 5.69788 5.80002 5.91320 6.00291 6.14228 6.17038 6.19122 6.49345 6.63918 6.82879 6.86937 7.55454 7.68987 7.71959 7.83604 8.04942 8.36018 8.68709 9.05708 9.61104 11.13071 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.003123 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.665272 B = 8963.618630 C = 9549.084952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.369 5.369 3 N -0.301 5.301 4 C 0.044 3.956 5 C -0.271 4.271 6 C 0.098 3.902 7 C -0.040 4.040 8 H 0.084 0.916 9 C -0.104 4.104 10 C -0.136 4.136 11 C 0.106 3.894 12 N -0.625 5.625 13 C 0.513 3.487 14 O -0.534 6.534 15 C -0.128 4.128 16 C 0.037 3.963 17 C -0.528 4.528 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.893 3.107 22 H -0.287 1.287 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.124 3.876 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.182 0.818 30 H 0.146 0.854 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.023 0.977 40 H 0.023 0.977 41 H 0.262 0.738 42 H 0.090 0.910 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.641 11.848 -13.362 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.151 5.151 3 N -0.122 5.122 4 C -0.141 4.141 5 C -0.300 4.300 6 C -0.031 4.031 7 C -0.061 4.061 8 H 0.103 0.897 9 C -0.143 4.143 10 C -0.174 4.174 11 C -0.017 4.017 12 N -0.360 5.360 13 C 0.304 3.696 14 O -0.409 6.409 15 C -0.168 4.168 16 C 0.000 4.000 17 C -0.566 4.566 18 H 0.073 0.927 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.721 3.279 22 H -0.213 1.213 23 H -0.203 1.203 24 H -0.202 1.202 25 C 0.000 4.000 26 H 0.097 0.903 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.199 0.801 30 H 0.164 0.836 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.041 0.959 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.147 13.275 -12.823 22.661 hybrid contribution 0.324 -1.589 -0.055 1.623 sum 13.472 11.686 -12.878 21.998 Atomic orbital electron populations 1.21914 0.74240 1.04397 1.03968 1.48533 1.06635 1.03363 1.56598 1.77368 1.01893 1.07947 1.24990 1.23812 0.95200 0.95114 1.00019 1.21196 0.96183 0.94878 1.17752 1.20928 0.91331 0.89786 1.01034 1.20133 1.00570 0.87373 0.98066 0.89737 1.21520 0.98565 0.94388 0.99786 1.21954 1.02496 0.95892 0.97094 1.21744 0.95805 0.94501 0.89653 1.48291 1.33424 1.07190 1.47127 1.21632 0.77888 0.92366 0.77726 1.90660 1.49447 1.60391 1.40382 1.21887 1.02880 0.88813 1.03187 1.18901 0.90819 0.96057 0.94234 1.21176 1.15016 0.93243 1.27196 0.92655 1.25026 0.96197 0.97757 0.95377 1.69988 1.19764 1.34749 1.28322 0.86652 0.77860 0.85508 0.77908 1.21284 1.20252 1.20221 1.21300 1.02029 0.82344 0.94326 0.90266 0.89235 0.89410 0.80125 0.83580 0.90926 0.91341 0.90220 0.91203 0.91489 0.88750 0.90189 0.90218 0.95897 0.95851 0.92876 0.89191 0.91424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.88 11.27 59.85 0.67 1.56 16 2 N -0.37 -4.36 4.01 -63.88 -0.26 -4.62 16 3 N -0.30 -3.84 12.58 30.63 0.39 -3.45 16 4 C 0.04 0.46 12.03 -17.36 -0.21 0.25 16 5 C -0.27 -2.74 9.98 -40.01 -0.40 -3.13 16 6 C 0.10 1.07 5.86 -82.27 -0.48 0.59 16 7 C -0.04 -0.41 2.52 -91.87 -0.23 -0.64 16 8 H 0.08 0.90 6.94 -51.93 -0.36 0.54 16 9 C -0.10 -0.84 4.73 -26.69 -0.13 -0.97 16 10 C -0.14 -1.11 6.08 -26.61 -0.16 -1.27 16 11 C 0.11 1.09 6.34 -3.71 -0.02 1.07 16 12 N -0.62 -8.77 2.98 -173.03 -0.52 -9.29 16 13 C 0.51 9.76 7.70 -10.99 -0.08 9.68 16 14 O -0.53 -12.41 15.40 5.55 0.09 -12.33 16 15 C -0.13 -2.54 3.99 -27.88 -0.11 -2.65 16 16 C 0.04 0.99 4.26 -27.88 -0.12 0.88 16 17 C -0.53 -14.79 9.11 -34.44 -0.31 -15.10 16 18 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 21 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.12 1.57 5.67 -3.93 -0.02 1.55 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 0.70 6.97 -51.93 -0.36 0.33 16 29 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 30 H 0.15 1.17 7.41 -52.49 -0.39 0.78 16 31 H 0.07 0.53 7.35 -51.93 -0.38 0.15 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.99 5.93 -51.93 -0.31 0.68 16 37 H 0.08 1.45 7.94 -51.93 -0.41 1.04 16 38 H 0.08 1.43 7.69 -51.93 -0.40 1.03 16 39 H 0.02 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 41 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.09 1.37 7.01 -51.93 -0.36 1.00 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 348.64 15.07 5.25 5.25 Total: -1.00 -35.32 348.64 -7.78 -43.10 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.74 Total: -1.94 kcal Atomic # 6 Polarization: -4.91 SS G_CDS: -1.71 Total: -6.62 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: 0.35 Total: -43.89 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.32 -7.78 -43.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360585521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.150 kcal (2) G-P(sol) polarization free energy of solvation -35.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds