Wall clock time and date at job start Tue Mar 31 2020 07:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.40086 * 126.03094 * 2 1 4 4 C 1.30838 * 108.20070 * 180.23169 * 3 2 1 5 5 C 1.39872 * 108.20568 * 359.78594 * 4 3 2 6 6 C 1.34946 * 126.04126 * 179.85000 * 2 1 3 7 7 C 1.50695 * 126.12245 * 0.03313 * 6 2 1 8 8 H 1.08999 * 109.52668 * 24.63462 * 7 6 2 9 9 C 1.53042 * 109.49562 * 144.71554 * 7 6 2 10 10 C 1.53041 * 109.53960 * 181.31319 * 9 7 6 11 11 C 1.53192 * 109.31398 * 298.63476 * 10 9 7 12 12 N 1.46923 * 108.77488 * 54.63654 * 11 10 9 13 13 C 1.34777 * 120.63277 * 126.36543 * 12 11 10 14 14 O 1.21283 * 119.99750 * 179.97438 * 13 12 11 15 15 C 1.50694 * 120.00104 * 0.02562 * 13 12 11 16 16 C 1.53004 * 109.47175 * 179.97438 * 15 13 12 17 17 C 1.50699 * 109.46843 * 180.02562 * 16 15 13 18 18 H 1.08002 * 120.00516 * 359.97438 * 17 16 15 19 19 C 1.37884 * 119.99783 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99707 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99956 * 180.27458 * 19 17 16 22 22 H 1.48497 * 109.47172 * 179.72730 * 21 19 17 23 23 H 1.48506 * 109.47132 * 299.72429 * 21 19 17 24 24 H 1.48501 * 109.47173 * 59.72550 * 21 19 17 25 25 C 1.46929 * 118.73572 * 306.64213 * 12 11 10 26 26 H 1.09003 * 109.47022 * 270.14617 * 1 2 3 27 27 H 1.09002 * 109.47561 * 30.15237 * 1 2 3 28 28 H 1.09003 * 109.46635 * 150.15441 * 1 2 3 29 29 H 1.08000 * 125.89973 * 179.73996 * 4 3 2 30 30 H 1.07995 * 126.04233 * 179.97438 * 5 4 3 31 31 H 1.09004 * 109.46026 * 61.29732 * 9 7 6 32 32 H 1.08996 * 109.46226 * 301.33408 * 9 7 6 33 33 H 1.08998 * 109.49643 * 178.68314 * 10 9 7 34 34 H 1.09000 * 109.52502 * 58.60340 * 10 9 7 35 35 H 1.08998 * 109.58850 * 294.84743 * 11 10 9 36 36 H 1.08998 * 109.58605 * 174.42050 * 11 10 9 37 37 H 1.09006 * 109.46887 * 59.99757 * 15 13 12 38 38 H 1.08997 * 109.46876 * 299.99806 * 15 13 12 39 39 H 1.09001 * 109.46361 * 60.00344 * 16 15 13 40 40 H 1.08997 * 109.46991 * 300.00234 * 16 15 13 41 41 H 0.97005 * 119.99656 * 179.97438 * 20 19 17 42 42 H 1.09003 * 109.58730 * 173.14629 * 25 12 11 43 43 H 1.09001 * 109.58886 * 293.56780 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5346 0.7323 -0.0050 5 6 3.5438 -0.6664 -0.0034 6 6 2.2590 -1.0912 0.0029 7 6 1.7974 -2.5257 0.0059 8 1 0.7971 -2.5874 -0.4226 9 6 2.7624 -3.3745 -0.8251 10 6 2.2766 -4.8255 -0.8497 11 6 2.2553 -5.3771 0.5793 12 7 1.4455 -4.4838 1.4189 13 6 0.4234 -4.9692 2.1512 14 8 -0.2373 -4.2215 2.8406 15 6 0.1023 -6.4411 2.1142 16 6 -1.0917 -6.7257 3.0276 17 6 -1.4124 -8.1977 2.9910 18 1 -0.8238 -8.8636 2.3774 19 6 -2.4580 -8.6943 3.7403 20 7 -3.1757 -7.8832 4.4864 21 14 -2.8507 -10.5201 3.7009 22 1 -4.0065 -10.7971 4.5911 23 1 -3.1874 -10.9242 2.3122 24 1 -1.6702 -11.2905 4.1682 25 6 1.7672 -3.0504 1.4403 26 1 -0.3633 0.0026 1.0277 27 1 -0.3634 0.8886 -0.5162 28 1 -0.3633 -0.8914 -0.5115 29 1 4.4053 1.3712 -0.0103 30 1 4.4211 -1.2961 -0.0069 31 1 3.7573 -3.3322 -0.3817 32 1 2.8020 -2.9875 -1.8432 33 1 2.9515 -5.4248 -1.4609 34 1 1.2719 -4.8662 -1.2704 35 1 3.2723 -5.4222 0.9688 36 1 1.8173 -6.3751 0.5793 37 1 0.9661 -7.0101 2.4579 38 1 -0.1429 -6.7339 1.0933 39 1 -1.9556 -6.1566 2.6841 40 1 -0.8462 -6.4329 4.0484 41 1 -3.9115 -8.2326 5.0132 42 1 1.0072 -2.5137 2.0082 43 1 2.7436 -2.9018 1.9014 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360585521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:11:38 Heat of formation + Delta-G solvation = 4.093708 kcal Electronic energy + Delta-G solvation = -23267.306166 eV Core-core repulsion = 19926.620473 eV Total energy + Delta-G solvation = -3340.685693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.37135 -41.08072 -38.53313 -35.61007 -34.77130 -34.09778 -32.98334 -32.55896 -29.87500 -27.94931 -27.65793 -26.17600 -24.71146 -23.40062 -22.54140 -21.63932 -20.26914 -19.75441 -18.85126 -17.89838 -17.49421 -16.95559 -16.60631 -16.44906 -16.23550 -15.58289 -15.33058 -15.17524 -14.70915 -14.63041 -14.32378 -14.17810 -14.01086 -13.74587 -13.67670 -13.37422 -13.25550 -13.19575 -12.77223 -12.51433 -12.27639 -12.06516 -11.91523 -11.90449 -11.61107 -11.54335 -11.43508 -11.31247 -10.69365 -10.55582 -10.32319 -9.67373 -9.44375 -8.17404 -6.31641 0.85329 1.42797 1.47312 1.54949 1.57118 1.67360 1.88602 2.05946 2.43890 3.15654 3.44915 3.60327 3.68033 3.79288 3.98780 4.08318 4.14920 4.22778 4.29596 4.31561 4.42818 4.50260 4.53991 4.55426 4.61522 4.70065 4.81792 4.83844 4.89280 4.93149 5.03268 5.15862 5.20514 5.26211 5.45964 5.48476 5.59764 5.62622 5.75723 5.85324 6.03980 6.17642 6.39616 6.74980 6.86863 7.24745 7.38828 8.95146 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.029539 B = 0.003123 C = 0.002932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.665272 B = 8963.618630 C = 9549.084952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.384 5.384 3 N -0.338 5.338 4 C 0.041 3.959 5 C -0.268 4.268 6 C 0.086 3.914 7 C -0.029 4.029 8 H 0.075 0.925 9 C -0.099 4.099 10 C -0.129 4.129 11 C 0.095 3.905 12 N -0.610 5.610 13 C 0.510 3.490 14 O -0.592 6.592 15 C -0.114 4.114 16 C 0.043 3.957 17 C -0.542 4.542 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.974 3.026 22 H -0.289 1.289 23 H -0.261 1.261 24 H -0.261 1.261 25 C 0.125 3.875 26 H 0.070 0.930 27 H 0.100 0.900 28 H 0.097 0.903 29 H 0.211 0.789 30 H 0.172 0.828 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.111 0.889 34 H 0.059 0.941 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.105 0.895 39 H -0.020 1.020 40 H -0.021 1.021 41 H 0.262 0.738 42 H 0.055 0.945 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.442 10.054 -15.678 25.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.166 5.166 3 N -0.159 5.159 4 C -0.143 4.143 5 C -0.297 4.297 6 C -0.043 4.043 7 C -0.050 4.050 8 H 0.093 0.907 9 C -0.137 4.137 10 C -0.167 4.167 11 C -0.027 4.027 12 N -0.343 5.343 13 C 0.300 3.700 14 O -0.472 6.472 15 C -0.154 4.154 16 C 0.006 3.994 17 C -0.580 4.580 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.797 3.203 22 H -0.215 1.215 23 H -0.186 1.186 24 H -0.186 1.186 25 C 0.001 3.999 26 H 0.089 0.911 27 H 0.118 0.882 28 H 0.115 0.885 29 H 0.228 0.772 30 H 0.189 0.811 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.130 0.870 34 H 0.078 0.922 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.122 0.878 38 H 0.123 0.877 39 H -0.001 1.001 40 H -0.002 1.002 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.014 11.475 -15.200 24.883 hybrid contribution -0.483 -0.950 0.664 1.256 sum 15.531 10.525 -14.536 23.734 Atomic orbital electron populations 1.22012 0.73716 1.05411 1.03761 1.48757 1.07278 1.03545 1.57054 1.77325 1.03101 1.09005 1.26509 1.24407 0.95348 0.95963 0.98626 1.21547 0.96519 0.95027 1.16641 1.21157 0.91865 0.89792 1.01460 1.20025 1.01075 0.87535 0.96386 0.90703 1.21540 0.98459 0.93682 1.00001 1.21941 1.02866 0.96243 0.95665 1.22162 0.96228 0.93833 0.90442 1.48236 1.31849 1.08438 1.45826 1.21449 0.78744 0.91761 0.78000 1.90642 1.51969 1.61368 1.43260 1.21634 1.00763 0.90124 1.02844 1.18685 0.92177 0.95357 0.93229 1.21688 1.15196 0.93985 1.27143 0.90388 1.26154 0.96039 1.03521 0.94787 1.70181 1.20585 1.37550 1.29581 0.85374 0.77824 0.78508 0.78550 1.21524 1.18552 1.18606 1.21345 1.01389 0.81103 0.96014 0.91111 0.88163 0.88488 0.77227 0.81065 0.89226 0.90118 0.87049 0.92211 0.88919 0.88558 0.87776 0.87696 1.00124 1.00225 0.92902 0.92625 0.89964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.77 11.27 127.77 1.44 3.21 16 2 N -0.38 -9.04 4.01 -356.02 -1.43 -10.47 16 3 N -0.34 -8.45 12.58 -57.02 -0.72 -9.16 16 4 C 0.04 0.79 12.03 85.24 1.02 1.82 16 5 C -0.27 -4.75 9.98 21.99 0.22 -4.53 16 6 C 0.09 1.76 5.86 41.40 0.24 2.01 16 7 C -0.03 -0.55 2.52 -11.61 -0.03 -0.58 16 8 H 0.07 1.56 6.94 -2.39 -0.02 1.54 16 9 C -0.10 -1.23 4.73 30.62 0.14 -1.08 16 10 C -0.13 -1.60 6.08 30.67 0.19 -1.41 16 11 C 0.09 1.62 6.34 86.36 0.55 2.17 16 12 N -0.61 -16.51 2.98 -819.74 -2.44 -18.95 16 13 C 0.51 19.82 7.70 87.66 0.67 20.50 16 14 O -0.59 -29.43 15.40 -3.04 -0.05 -29.47 16 15 C -0.11 -4.51 3.99 29.85 0.12 -4.39 16 16 C 0.04 2.40 4.26 29.85 0.13 2.53 16 17 C -0.54 -30.54 9.11 25.60 0.23 -30.31 16 18 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 19 C -0.01 -0.44 5.46 84.66 0.46 0.02 16 20 N -0.94 -59.64 13.29 21.45 0.28 -59.36 16 21 Si 0.97 43.83 29.54 68.60 2.03 45.86 16 22 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.26 -11.01 7.11 99.48 0.71 -10.31 16 24 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 25 C 0.12 3.11 5.67 86.22 0.49 3.60 16 26 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.10 1.62 6.97 -2.39 -0.02 1.60 16 29 H 0.21 2.43 8.06 -2.91 -0.02 2.41 16 30 H 0.17 2.04 7.41 -2.91 -0.02 2.02 16 31 H 0.09 0.86 7.35 -2.39 -0.02 0.84 16 32 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 1.66 5.93 -2.39 -0.01 1.64 16 37 H 0.10 3.60 7.94 -2.38 -0.02 3.58 16 38 H 0.10 3.60 7.69 -2.39 -0.02 3.58 16 39 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 40 H -0.02 -1.31 8.10 -2.39 -0.02 -1.33 16 41 H 0.26 15.65 8.31 -92.70 -0.77 14.87 16 42 H 0.06 1.79 7.01 -2.39 -0.02 1.77 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -81.81 348.64 4.55 -77.26 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: 0.99 Total: 10.75 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: 5.88 Total: -6.46 kcal Atomic # 7 Polarization: -93.63 SS G_CDS: -4.30 Total: -97.94 kcal Atomic # 8 Polarization: -29.43 SS G_CDS: -0.05 Total: -29.47 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -81.81 4.55 -77.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360585521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.352 kcal (2) G-P(sol) polarization free energy of solvation -81.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds