Wall clock time and date at job start Tue Mar 31 2020 06:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46910 * 2 1 4 4 C 1.46501 * 119.99437 * 262.13787 * 3 2 1 5 5 C 1.50697 * 109.47086 * 90.00478 * 4 3 2 6 6 H 1.07998 * 119.99938 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00256 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99758 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00119 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46853 * 60.00397 * 9 7 5 11 11 H 1.48502 * 109.46904 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46942 * 300.00135 * 9 7 5 13 13 C 1.34769 * 120.00391 * 82.14181 * 3 2 1 14 14 O 1.21629 * 120.00110 * 182.08873 * 13 3 2 15 15 C 1.47167 * 119.99886 * 2.09147 * 13 3 2 16 16 C 1.38400 * 126.88177 * 350.01301 * 15 13 3 17 17 C 1.39676 * 105.35944 * 179.97438 * 16 15 13 18 18 N 1.30868 * 107.86009 * 0.35217 * 17 16 15 19 19 N 1.28440 * 110.92624 * 359.77501 * 18 17 16 20 20 C 1.46504 * 125.18923 * 179.97438 * 19 18 17 21 21 C 1.54263 * 110.03024 * 62.78405 * 20 19 18 22 22 C 1.54971 * 104.15539 * 217.13516 * 21 20 19 23 23 C 1.54886 * 102.77878 * 37.89091 * 22 21 20 24 24 C 1.53866 * 110.03188 * 305.56381 * 20 19 18 25 25 H 1.08998 * 109.46910 * 296.29758 * 1 2 3 26 26 H 1.08997 * 109.47092 * 56.30306 * 1 2 3 27 27 H 1.09000 * 109.46778 * 176.30322 * 1 2 3 28 28 H 1.09004 * 109.47147 * 119.99422 * 2 1 3 29 29 H 1.08995 * 109.47292 * 239.99632 * 2 1 3 30 30 H 1.09001 * 109.47002 * 209.99974 * 4 3 2 31 31 H 1.08999 * 109.47706 * 330.00233 * 4 3 2 32 32 H 0.97003 * 119.99916 * 179.97438 * 8 7 5 33 33 H 1.08003 * 127.32677 * 0.03371 * 16 15 13 34 34 H 1.08002 * 126.07233 * 180.09257 * 17 16 15 35 35 H 1.09002 * 110.01006 * 184.17560 * 20 19 18 36 36 H 1.09000 * 110.48805 * 335.78275 * 21 20 19 37 37 H 1.09001 * 110.48672 * 98.42903 * 21 20 19 38 38 H 1.09000 * 110.72007 * 279.57518 * 22 21 20 39 39 H 1.09002 * 110.75989 * 156.22677 * 22 21 20 40 40 H 1.08996 * 110.48817 * 203.40946 * 23 22 21 41 41 H 1.08994 * 110.59905 * 80.81372 * 23 22 21 42 42 H 1.08998 * 110.03669 * 238.57270 * 24 20 19 43 43 H 1.09002 * 110.03284 * 359.95445 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4261 2.0139 -1.2569 5 6 1.2389 2.7000 -1.8821 6 1 0.2769 2.6677 -1.3925 7 6 1.3810 3.3691 -3.0793 8 7 2.5524 3.4080 -3.6758 9 14 -0.0908 4.2190 -3.8547 10 1 -0.6113 5.2535 -2.9251 11 1 0.3226 4.8604 -5.1287 12 1 -1.1535 3.2182 -4.1269 13 6 2.0925 2.0698 1.1561 14 8 2.4618 3.2287 1.1512 15 6 1.7267 1.4195 2.4246 16 6 1.1129 0.1889 2.5804 17 6 0.9790 0.0142 3.9597 18 7 1.4738 1.0731 4.5483 19 7 1.9185 1.9127 3.6840 20 6 2.5364 3.2028 4.0004 21 6 3.8329 2.9839 4.8072 22 6 3.8480 4.1526 5.8248 23 6 2.3545 4.2890 6.2119 24 6 1.5969 4.0325 4.8928 25 1 -0.3633 0.4553 0.9213 26 1 -0.3633 0.5701 -0.8550 27 1 -0.3633 -1.0255 -0.0663 28 1 1.8934 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.2066 2.7482 -1.0576 31 1 2.8075 1.2542 -1.9391 32 1 2.6522 3.8784 -4.5183 33 1 0.8039 -0.4921 1.8012 34 1 0.5408 -0.8409 4.4528 35 1 2.7557 3.7468 3.0816 36 1 3.8018 2.0262 5.3268 37 1 4.7029 3.0358 4.1526 38 1 4.2106 5.0674 5.3561 39 1 4.4513 3.8984 6.6963 40 1 2.1465 5.2929 6.5822 41 1 2.0824 3.5437 6.9592 42 1 1.3608 4.9796 4.4076 43 1 0.6807 3.4757 5.0897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361994850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:04 Heat of formation + Delta-G solvation = 58.021295 kcal Electronic energy + Delta-G solvation = -24223.227951 eV Core-core repulsion = 20884.880734 eV Total energy + Delta-G solvation = -3338.347217 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.39196 -38.85515 -37.94585 -35.65838 -33.00159 -32.03906 -30.95928 -29.82615 -28.85365 -27.57442 -27.14134 -23.82479 -22.82326 -22.06167 -21.69427 -20.82337 -20.03813 -18.58164 -16.93962 -16.50758 -16.11799 -15.83365 -15.44264 -15.18180 -14.75953 -14.33440 -14.24432 -13.85754 -13.56566 -13.42439 -12.83594 -12.39693 -12.19028 -12.17224 -11.71270 -11.56511 -11.50992 -11.27600 -11.26017 -11.22071 -11.01056 -10.92117 -10.79438 -10.68601 -10.60319 -10.26273 -10.05304 -9.64672 -9.13214 -8.90124 -8.61834 -8.45121 -7.76704 -6.07204 -4.11570 1.68924 2.64807 2.86522 3.30465 3.34900 3.37967 3.77461 3.87524 4.38373 4.42523 4.47394 4.81546 4.88481 4.93015 5.27336 5.29458 5.33383 5.38683 5.41526 5.42737 5.50325 5.54829 5.70092 5.72946 5.76180 5.78245 5.84444 5.91418 5.95037 6.06981 6.13948 6.19814 6.24766 6.31268 6.72976 6.77478 6.98499 7.05521 7.35367 7.46152 7.88537 8.18283 8.23594 8.37629 8.80915 8.96884 9.53125 11.00970 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.004804 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.733613 B = 5826.678871 C = 6645.355246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.088 3.912 3 N -0.575 5.575 4 C 0.247 3.753 5 C -0.525 4.525 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.576 3.424 14 O -0.543 6.543 15 C -0.021 4.021 16 C -0.223 4.223 17 C -0.015 4.015 18 N -0.286 5.286 19 N -0.252 5.252 20 C 0.129 3.871 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.119 4.119 24 C -0.128 4.128 25 H 0.062 0.938 26 H 0.075 0.925 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.045 0.955 31 H 0.036 0.964 32 H 0.264 0.736 33 H 0.186 0.814 34 H 0.180 0.820 35 H 0.141 0.859 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.623 -5.675 15.994 16.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.035 4.035 3 N -0.305 5.305 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.362 3.638 14 O -0.422 6.422 15 C -0.150 4.150 16 C -0.251 4.251 17 C -0.192 4.192 18 N -0.118 5.118 19 N -0.040 5.040 20 C 0.029 3.971 21 C -0.168 4.168 22 C -0.159 4.159 23 C -0.157 4.157 24 C -0.167 4.167 25 H 0.081 0.919 26 H 0.094 0.906 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.074 0.926 33 H 0.203 0.797 34 H 0.197 0.803 35 H 0.159 0.841 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.096 0.904 43 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.060 -4.376 16.846 17.405 hybrid contribution -1.107 -0.011 -1.385 1.773 sum -1.167 -4.387 15.461 16.114 Atomic orbital electron populations 1.22462 0.96154 1.01749 1.03810 1.22067 0.94705 0.83802 1.02968 1.47996 1.61583 1.12944 1.07958 1.19398 0.96439 0.93538 0.77744 1.21375 0.95748 1.33541 1.05674 0.92293 1.24918 0.96054 0.96085 0.96927 1.69917 1.22792 1.42967 1.17710 0.86572 0.82632 0.79872 0.78440 1.20218 1.21169 1.20207 1.16891 0.79156 0.85607 0.82189 1.90684 1.48977 1.16251 1.86304 1.21832 1.08196 0.96893 0.88051 1.23380 1.06251 0.97531 0.97977 1.23547 1.05018 0.97974 0.92622 1.73016 1.15307 1.01575 1.21897 1.45883 1.41005 1.15045 1.02019 1.22834 0.92444 0.79232 1.02632 1.22746 0.96199 1.00102 0.97802 1.22472 0.96716 0.98164 0.98509 1.22318 0.94820 1.01624 0.96930 1.22445 0.98697 1.00030 0.95496 0.91937 0.90557 0.92155 0.89871 0.90184 0.93722 0.94560 0.92637 0.79730 0.80309 0.84128 0.90342 0.90646 0.90911 0.91060 0.91350 0.91227 0.90366 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.74 8.81 37.16 0.33 -2.42 16 2 C 0.09 1.42 5.68 -4.04 -0.02 1.39 16 3 N -0.57 -12.14 2.48 -176.43 -0.44 -12.58 16 4 C 0.25 6.32 5.18 -5.19 -0.03 6.29 16 5 C -0.52 -14.51 9.25 -34.44 -0.32 -14.83 16 6 H 0.06 1.63 7.30 -52.49 -0.38 1.25 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 10 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 C 0.58 12.41 7.57 -12.64 -0.10 12.31 16 14 O -0.54 -13.38 14.04 5.25 0.07 -13.31 16 15 C -0.02 -0.38 6.76 -82.06 -0.55 -0.93 16 16 C -0.22 -3.30 7.37 -38.99 -0.29 -3.58 16 17 C -0.02 -0.21 12.03 -17.43 -0.21 -0.42 16 18 N -0.29 -4.43 11.05 30.59 0.34 -4.09 16 19 N -0.25 -4.20 3.06 -49.62 -0.15 -4.35 16 20 C 0.13 1.96 3.60 -66.82 -0.24 1.72 16 21 C -0.13 -1.65 6.51 -25.03 -0.16 -1.82 16 22 C -0.12 -1.22 6.91 -24.70 -0.17 -1.39 16 23 C -0.12 -1.23 6.83 -25.07 -0.17 -1.40 16 24 C -0.13 -1.67 6.47 -25.61 -0.17 -1.84 16 25 H 0.06 0.95 5.98 -51.93 -0.31 0.64 16 26 H 0.08 1.36 7.49 -51.93 -0.39 0.97 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.08 1.15 4.81 -51.93 -0.25 0.90 16 29 H 0.08 1.24 7.81 -51.93 -0.41 0.83 16 30 H 0.04 1.28 7.45 -51.93 -0.39 0.89 16 31 H 0.04 0.93 7.85 -51.93 -0.41 0.52 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.19 2.34 3.40 -52.48 -0.18 2.16 16 34 H 0.18 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.14 2.51 5.40 -51.93 -0.28 2.23 16 36 H 0.08 1.04 7.78 -51.93 -0.40 0.63 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 43 H 0.08 1.07 7.61 -51.93 -0.40 0.67 16 LS Contribution 339.45 15.07 5.12 5.12 Total: -1.00 -31.89 339.45 -7.85 -39.74 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -6.31 Total: 3.53 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: -2.20 Total: -5.26 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: 0.49 Total: -46.41 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.07 Total: -13.31 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -31.89 -7.85 -39.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361994850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.760 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds