Wall clock time and date at job start Tue Mar 31 2020 06:52:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46501 * 109.46910 * 2 1 4 4 C 1.46501 * 119.99437 * 262.13787 * 3 2 1 5 5 C 1.50697 * 109.47086 * 90.00478 * 4 3 2 6 6 H 1.07998 * 119.99938 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00256 * 179.97438 * 5 4 3 8 8 N 1.31514 * 119.99758 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00119 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.46853 * 60.00397 * 9 7 5 11 11 H 1.48502 * 109.46904 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.46942 * 300.00135 * 9 7 5 13 13 C 1.34769 * 120.00391 * 82.14181 * 3 2 1 14 14 O 1.21629 * 120.00110 * 182.08873 * 13 3 2 15 15 C 1.47167 * 119.99886 * 2.09147 * 13 3 2 16 16 C 1.38400 * 126.88177 * 350.01301 * 15 13 3 17 17 C 1.39676 * 105.35944 * 179.97438 * 16 15 13 18 18 N 1.30868 * 107.86009 * 0.35217 * 17 16 15 19 19 N 1.28440 * 110.92624 * 359.77501 * 18 17 16 20 20 C 1.46504 * 125.18923 * 179.97438 * 19 18 17 21 21 C 1.54263 * 110.03024 * 62.78405 * 20 19 18 22 22 C 1.54971 * 104.15539 * 217.13516 * 21 20 19 23 23 C 1.54886 * 102.77878 * 37.89091 * 22 21 20 24 24 C 1.53866 * 110.03188 * 305.56381 * 20 19 18 25 25 H 1.08998 * 109.46910 * 296.29758 * 1 2 3 26 26 H 1.08997 * 109.47092 * 56.30306 * 1 2 3 27 27 H 1.09000 * 109.46778 * 176.30322 * 1 2 3 28 28 H 1.09004 * 109.47147 * 119.99422 * 2 1 3 29 29 H 1.08995 * 109.47292 * 239.99632 * 2 1 3 30 30 H 1.09001 * 109.47002 * 209.99974 * 4 3 2 31 31 H 1.08999 * 109.47706 * 330.00233 * 4 3 2 32 32 H 0.97003 * 119.99916 * 179.97438 * 8 7 5 33 33 H 1.08003 * 127.32677 * 0.03371 * 16 15 13 34 34 H 1.08002 * 126.07233 * 180.09257 * 17 16 15 35 35 H 1.09002 * 110.01006 * 184.17560 * 20 19 18 36 36 H 1.09000 * 110.48805 * 335.78275 * 21 20 19 37 37 H 1.09001 * 110.48672 * 98.42903 * 21 20 19 38 38 H 1.09000 * 110.72007 * 279.57518 * 22 21 20 39 39 H 1.09002 * 110.75989 * 156.22677 * 22 21 20 40 40 H 1.08996 * 110.48817 * 203.40946 * 23 22 21 41 41 H 1.08994 * 110.59905 * 80.81372 * 23 22 21 42 42 H 1.08998 * 110.03669 * 238.57270 * 24 20 19 43 43 H 1.09002 * 110.03284 * 359.95445 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4261 2.0139 -1.2569 5 6 1.2389 2.7000 -1.8821 6 1 0.2769 2.6677 -1.3925 7 6 1.3810 3.3691 -3.0793 8 7 2.5524 3.4080 -3.6758 9 14 -0.0908 4.2190 -3.8547 10 1 -0.6113 5.2535 -2.9251 11 1 0.3226 4.8604 -5.1287 12 1 -1.1535 3.2182 -4.1269 13 6 2.0925 2.0698 1.1561 14 8 2.4618 3.2287 1.1512 15 6 1.7267 1.4195 2.4246 16 6 1.1129 0.1889 2.5804 17 6 0.9790 0.0142 3.9597 18 7 1.4738 1.0731 4.5483 19 7 1.9185 1.9127 3.6840 20 6 2.5364 3.2028 4.0004 21 6 3.8329 2.9839 4.8072 22 6 3.8480 4.1526 5.8248 23 6 2.3545 4.2890 6.2119 24 6 1.5969 4.0325 4.8928 25 1 -0.3633 0.4553 0.9213 26 1 -0.3633 0.5701 -0.8550 27 1 -0.3633 -1.0255 -0.0663 28 1 1.8934 -0.5138 0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 3.2066 2.7482 -1.0576 31 1 2.8075 1.2542 -1.9391 32 1 2.6522 3.8784 -4.5183 33 1 0.8039 -0.4921 1.8012 34 1 0.5408 -0.8409 4.4528 35 1 2.7557 3.7468 3.0816 36 1 3.8018 2.0262 5.3268 37 1 4.7029 3.0358 4.1526 38 1 4.2106 5.0674 5.3561 39 1 4.4513 3.8984 6.6963 40 1 2.1465 5.2929 6.5822 41 1 2.0824 3.5437 6.9592 42 1 1.3608 4.9796 4.4076 43 1 0.6807 3.4757 5.0897 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361994850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:03 Heat of formation + Delta-G solvation = 39.065875 kcal Electronic energy + Delta-G solvation = -24224.049920 eV Core-core repulsion = 20884.880734 eV Total energy + Delta-G solvation = -3339.169186 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.62792 -40.50073 -38.97900 -37.27586 -35.04009 -33.22347 -32.51599 -31.18687 -29.83443 -29.19827 -28.52558 -25.60459 -24.36765 -23.22824 -23.06813 -21.70808 -21.44754 -19.86227 -18.73383 -18.24654 -17.57055 -16.99020 -16.91193 -16.66217 -16.12447 -15.83260 -15.70887 -15.25752 -14.91079 -14.42346 -14.26777 -14.09717 -13.78100 -13.47404 -13.33172 -13.03763 -12.84028 -12.71088 -12.64009 -12.57062 -12.22715 -12.17491 -12.10640 -12.04209 -11.90531 -11.70938 -11.55764 -11.41301 -10.78896 -10.63771 -10.17243 -9.84677 -9.52514 -8.22819 -6.36045 0.31391 1.35969 1.39260 1.40324 1.47342 1.73177 2.19785 2.30582 2.41745 3.07271 3.34236 3.46441 3.48220 3.81836 3.92877 4.10954 4.20707 4.29692 4.36735 4.38146 4.39970 4.43855 4.58730 4.63181 4.67121 4.73861 4.81478 4.92148 4.94874 5.00944 5.05086 5.06550 5.11295 5.13674 5.19400 5.35969 5.49883 5.57282 5.62829 5.79836 5.84877 6.04109 6.57583 6.71340 7.12357 7.21187 7.36435 8.84452 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018040 B = 0.004804 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.733613 B = 5826.678871 C = 6645.355246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.080 3.920 3 N -0.580 5.580 4 C 0.263 3.737 5 C -0.536 4.536 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.927 5.927 9 Si 0.963 3.037 10 H -0.281 1.281 11 H -0.278 1.278 12 H -0.260 1.260 13 C 0.568 3.432 14 O -0.591 6.591 15 C -0.058 4.058 16 C -0.202 4.202 17 C -0.007 4.007 18 N -0.289 5.289 19 N -0.258 5.258 20 C 0.119 3.881 21 C -0.125 4.125 22 C -0.114 4.114 23 C -0.110 4.110 24 C -0.125 4.125 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.086 0.914 30 H 0.001 0.999 31 H 0.032 0.968 32 H 0.267 0.733 33 H 0.209 0.791 34 H 0.225 0.775 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -7.412 17.820 19.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.041 4.041 3 N -0.309 5.309 4 C 0.142 3.858 5 C -0.575 4.575 6 H 0.071 0.929 7 C -0.188 4.188 8 N -0.567 5.567 9 Si 0.787 3.213 10 H -0.207 1.207 11 H -0.203 1.203 12 H -0.185 1.185 13 C 0.356 3.644 14 O -0.473 6.473 15 C -0.185 4.185 16 C -0.230 4.230 17 C -0.182 4.182 18 N -0.121 5.121 19 N -0.046 5.046 20 C 0.018 3.982 21 C -0.164 4.164 22 C -0.151 4.151 23 C -0.148 4.148 24 C -0.164 4.164 25 H 0.079 0.921 26 H 0.061 0.939 27 H 0.124 0.876 28 H 0.131 0.869 29 H 0.104 0.896 30 H 0.019 0.981 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.225 0.775 34 H 0.241 0.759 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.665 -6.156 18.682 19.740 hybrid contribution -0.597 0.463 -1.922 2.065 sum -2.263 -5.693 16.760 17.844 Atomic orbital electron populations 1.22394 0.94803 1.03981 1.02165 1.22445 0.95762 0.81122 1.04766 1.47966 1.61701 1.14782 1.06493 1.18882 0.94807 0.92554 0.79556 1.21604 0.95959 1.33953 1.05977 0.92861 1.25780 0.98888 0.96653 0.97470 1.70032 1.24750 1.43740 1.18159 0.85542 0.79439 0.78819 0.77467 1.20653 1.20281 1.18461 1.17421 0.78261 0.85233 0.83475 1.90655 1.50988 1.18443 1.87215 1.21505 1.11329 0.98591 0.87122 1.23667 1.04042 0.95987 0.99320 1.24290 1.03585 0.98304 0.92036 1.73037 1.15244 1.02005 1.21816 1.46001 1.41368 1.15542 1.01661 1.22872 0.94312 0.79220 1.01776 1.22716 0.94490 1.01212 0.97932 1.22486 0.97078 0.97105 0.98450 1.22299 0.94226 1.02969 0.95262 1.22434 0.98137 0.99161 0.96638 0.92097 0.93882 0.87612 0.86854 0.89561 0.98120 0.95018 0.92395 0.77515 0.75877 0.87673 0.90526 0.91540 0.90547 0.88774 0.89355 0.90631 0.90799 0.91642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.89 8.81 71.98 0.63 -4.25 16 2 C 0.08 2.50 5.68 86.38 0.49 2.99 16 3 N -0.58 -25.33 2.48 -830.34 -2.06 -27.38 16 4 C 0.26 14.14 5.18 85.63 0.44 14.59 16 5 C -0.54 -30.72 9.25 25.60 0.24 -30.48 16 6 H 0.05 3.04 7.30 -2.91 -0.02 3.02 16 7 C 0.01 0.64 5.46 84.66 0.46 1.11 16 8 N -0.93 -55.65 13.29 21.45 0.28 -55.36 16 9 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.26 -11.38 7.11 99.48 0.71 -10.68 16 13 C 0.57 25.62 7.57 86.59 0.66 26.27 16 14 O -0.59 -31.39 14.04 -4.12 -0.06 -31.45 16 15 C -0.06 -2.07 6.76 40.79 0.28 -1.80 16 16 C -0.20 -5.44 7.37 22.66 0.17 -5.27 16 17 C -0.01 -0.16 12.03 85.18 1.02 0.87 16 18 N -0.29 -8.38 11.05 -57.13 -0.63 -9.01 16 19 N -0.26 -8.58 3.06 -310.89 -0.95 -9.53 16 20 C 0.12 3.74 3.60 45.71 0.16 3.91 16 21 C -0.13 -3.19 6.51 31.70 0.21 -2.98 16 22 C -0.11 -2.13 6.91 31.91 0.22 -1.91 16 23 C -0.11 -2.08 6.83 31.67 0.22 -1.86 16 24 C -0.13 -3.28 6.47 31.32 0.20 -3.08 16 25 H 0.06 1.71 5.98 -2.39 -0.01 1.70 16 26 H 0.04 1.50 7.49 -2.39 -0.02 1.48 16 27 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.11 2.84 4.81 -2.39 -0.01 2.83 16 29 H 0.09 2.57 7.81 -2.39 -0.02 2.55 16 30 H 0.00 0.04 7.45 -2.39 -0.02 0.03 16 31 H 0.03 1.71 7.85 -2.39 -0.02 1.69 16 32 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 33 H 0.21 4.45 3.40 -2.91 -0.01 4.44 16 34 H 0.22 3.13 8.06 -2.91 -0.02 3.10 16 35 H 0.11 4.09 5.40 -2.39 -0.01 4.08 16 36 H 0.08 1.96 7.78 -2.39 -0.02 1.95 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 1.36 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.93 8.14 -2.39 -0.02 1.92 16 43 H 0.06 1.83 7.61 -2.39 -0.02 1.81 16 Total: -1.00 -73.69 339.45 5.03 -68.67 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: 1.01 Total: 19.04 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 5.40 Total: -1.91 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -3.35 Total: -101.29 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.06 Total: -31.45 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -73.69 5.03 -68.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361994850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.733 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds