Wall clock time and date at job start Tue Mar 31 2020 07:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 119.99834 * 2 1 4 4 C 1.50701 * 109.47267 * 270.00111 * 3 2 1 5 5 C 1.34852 * 125.96413 * 95.00062 * 4 3 2 6 6 N 1.36319 * 106.68751 * 180.02562 * 5 4 3 7 7 C 1.35425 * 107.39870 * 0.03949 * 6 5 4 8 8 N 1.30096 * 108.62682 * 359.94451 * 7 6 5 9 9 C 1.51039 * 123.98330 * 179.97438 * 7 6 5 10 10 C 1.53403 * 108.24410 * 344.01707 * 9 7 6 11 11 C 1.53220 * 109.20304 * 48.79332 * 10 9 7 12 12 C 1.46468 * 127.77524 * 180.02562 * 6 5 4 13 13 C 1.34777 * 120.00023 * 179.97438 * 2 1 3 14 14 O 1.21273 * 119.99667 * 180.02562 * 13 2 1 15 15 C 1.50698 * 119.99794 * 0.02562 * 13 2 1 16 16 C 1.53004 * 109.46942 * 179.97438 * 15 13 2 17 17 C 1.50698 * 109.46942 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00503 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99655 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99913 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47064 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46841 * 120.00082 * 21 19 17 24 24 H 1.48490 * 109.47152 * 240.00382 * 21 19 17 25 25 H 1.08996 * 109.46832 * 89.99966 * 1 2 3 26 26 H 1.08996 * 109.46989 * 209.99920 * 1 2 3 27 27 H 1.08996 * 109.47215 * 330.00139 * 1 2 3 28 28 H 1.09005 * 109.47177 * 149.99862 * 3 2 1 29 29 H 1.09008 * 109.47121 * 30.00101 * 3 2 1 30 30 H 1.07992 * 126.65972 * 0.02562 * 5 4 3 31 31 H 1.09002 * 109.71592 * 103.71935 * 9 7 6 32 32 H 1.09001 * 109.71479 * 224.31837 * 9 7 6 33 33 H 1.09004 * 109.50552 * 168.76588 * 10 9 7 34 34 H 1.08994 * 109.51016 * 288.90422 * 10 9 7 35 35 H 1.08997 * 109.45505 * 170.53651 * 11 10 9 36 36 H 1.09001 * 109.44849 * 50.56772 * 11 10 9 37 37 H 1.08998 * 109.58157 * 282.60169 * 12 6 5 38 38 H 1.08992 * 109.58559 * 43.01857 * 12 6 5 39 39 H 1.08993 * 109.47251 * 299.99430 * 15 13 2 40 40 H 1.08999 * 109.47463 * 59.99855 * 15 13 2 41 41 H 1.09006 * 109.46638 * 300.00190 * 16 15 13 42 42 H 1.08999 * 109.47009 * 59.99762 * 16 15 13 43 43 H 0.97003 * 119.99902 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 1.6838 2.5538 -2.1357 6 7 2.2677 2.6686 -3.3622 7 6 3.3718 1.8844 -3.3601 8 7 3.4728 1.3121 -2.1961 9 6 4.3020 1.7329 -4.5404 10 6 3.5831 2.2596 -5.7891 11 6 2.9827 3.6354 -5.4822 12 6 1.8182 3.4772 -4.4977 13 6 2.1390 -1.1672 0.0005 14 8 3.3517 -1.1671 0.0010 15 6 1.3854 -2.4723 0.0005 16 6 2.3797 -3.6352 0.0005 17 6 1.6262 -4.9403 0.0012 18 1 0.5462 -4.9403 0.0011 19 6 2.3156 -6.1344 0.0007 20 7 3.6308 -6.1343 0.0003 21 14 1.3817 -7.7521 0.0022 22 1 -0.0784 -7.4807 0.0032 23 1 1.7391 -8.5311 -1.2105 24 1 1.7417 -8.5303 1.2145 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.1500 1.1384 0.5139 29 1 1.6084 2.0284 0.5139 30 1 0.7835 3.0476 -1.8016 31 1 5.2109 2.3096 -4.3686 32 1 4.5541 0.6814 -4.6773 33 1 4.2955 2.3469 -6.6095 34 1 2.7872 1.5696 -6.0691 35 1 2.6188 4.0868 -6.4052 36 1 3.7475 4.2752 -5.0419 37 1 0.9845 2.9796 -4.9931 38 1 1.5029 4.4591 -4.1450 39 1 0.7585 -2.5298 0.8903 40 1 0.7591 -2.5302 -0.8896 41 1 3.0064 -3.5774 -0.8895 42 1 3.0064 -3.5774 0.8905 43 1 4.1158 -6.9743 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362175606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:33 Heat of formation + Delta-G solvation = 13.450789 kcal Electronic energy + Delta-G solvation = -23120.595157 eV Core-core repulsion = 19780.315217 eV Total energy + Delta-G solvation = -3340.279940 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.30632 -39.08276 -36.88835 -34.99705 -33.38634 -33.29062 -31.30350 -30.26449 -28.86472 -27.25926 -26.18099 -24.94452 -23.81797 -22.41575 -21.48253 -20.16560 -19.17517 -18.28407 -16.99835 -16.72411 -16.19816 -15.63761 -15.34630 -15.30408 -14.61440 -14.41274 -14.34782 -14.14662 -13.86082 -13.77642 -13.22957 -12.75530 -12.49176 -12.22747 -12.14699 -11.98013 -11.87656 -11.72885 -11.48226 -11.33919 -11.26768 -10.96946 -10.87659 -10.49857 -9.82087 -9.72087 -9.52279 -9.47925 -9.01921 -8.83206 -8.30441 -8.22667 -8.12298 -5.86932 -3.90849 2.01074 2.68919 3.03808 3.37914 3.44479 3.48121 3.51690 3.82183 4.08825 4.24084 4.30497 4.37851 4.54497 4.76633 4.90299 4.97543 5.04253 5.17898 5.25934 5.29698 5.35299 5.38582 5.47543 5.52279 5.62291 5.64600 5.72815 5.81643 5.83238 5.88705 6.14550 6.31782 6.37555 6.39854 6.80014 6.95507 7.05805 7.19511 7.85230 7.96793 8.00596 8.19369 8.29553 8.49924 9.01438 9.19041 9.71851 11.24068 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.003361 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.081299 B = 8328.918990 C = 8999.677970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.627 5.627 3 C 0.199 3.801 4 C -0.007 4.007 5 C -0.051 4.051 6 N -0.460 5.460 7 C 0.203 3.797 8 N -0.456 5.456 9 C -0.034 4.034 10 C -0.125 4.125 11 C -0.134 4.134 12 C 0.105 3.895 13 C 0.509 3.491 14 O -0.515 6.515 15 C -0.126 4.126 16 C 0.037 3.963 17 C -0.524 4.524 18 H 0.055 0.945 19 C 0.057 3.943 20 N -0.889 5.889 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.284 1.284 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.171 0.829 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.087 0.913 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.023 0.977 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.823 24.585 -10.070 27.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.363 5.363 3 C 0.075 3.925 4 C -0.138 4.138 5 C -0.184 4.184 6 N -0.145 5.145 7 C -0.060 4.060 8 N -0.174 5.174 9 C -0.073 4.073 10 C -0.163 4.163 11 C -0.172 4.172 12 C -0.018 4.018 13 C 0.299 3.701 14 O -0.389 6.389 15 C -0.166 4.166 16 C 0.000 4.000 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.111 0.889 29 H 0.100 0.900 30 H 0.188 0.812 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.042 0.958 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.443 23.993 -9.920 26.528 hybrid contribution -1.426 -0.247 -0.339 1.486 sum -6.869 23.747 -10.259 26.764 Atomic orbital electron populations 1.21679 0.80246 1.02732 1.01154 1.48075 1.06376 1.05720 1.76123 1.19465 0.98361 0.85152 0.89506 1.21216 0.94214 1.00016 0.98335 1.22233 1.02520 1.07619 0.86074 1.45357 1.21700 1.35831 1.11564 1.23367 0.90687 0.95233 0.96667 1.70127 1.23545 1.22766 1.00999 1.20180 0.95399 1.03864 0.87882 1.21691 1.00820 0.96081 0.97743 1.21909 0.97502 0.98645 0.99118 1.21930 0.98208 0.95498 0.86144 1.21490 0.88566 0.85336 0.74743 1.90686 1.14152 1.86955 1.47059 1.21854 1.00600 0.92270 1.01880 1.18899 0.93206 0.89345 0.98595 1.21276 0.92893 0.91097 1.50968 0.92673 1.25033 0.94811 0.99144 0.95474 1.70023 1.06009 1.26307 1.50447 0.86556 0.79998 0.84001 0.77520 1.19798 1.21086 1.21052 0.93571 0.90591 0.91871 0.88916 0.90036 0.81211 0.89428 0.88519 0.89974 0.91115 0.89459 0.90647 0.90011 0.89506 0.90517 0.90757 0.95860 0.95843 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.03 10.29 59.85 0.62 1.65 16 2 N -0.63 -10.43 2.86 -182.95 -0.52 -10.96 16 3 C 0.20 3.01 5.99 -5.19 -0.03 2.98 16 4 C -0.01 -0.11 6.68 -82.72 -0.55 -0.66 16 5 C -0.05 -0.62 11.55 -16.76 -0.19 -0.81 16 6 N -0.46 -5.30 3.13 -113.74 -0.36 -5.65 16 7 C 0.20 2.91 7.65 -155.23 -1.19 1.72 16 8 N -0.46 -8.41 11.24 -6.88 -0.08 -8.49 16 9 C -0.03 -0.36 6.33 -27.51 -0.17 -0.54 16 10 C -0.13 -0.88 5.97 -26.41 -0.16 -1.04 16 11 C -0.13 -0.75 5.94 -26.46 -0.16 -0.90 16 12 C 0.10 0.72 6.98 -3.90 -0.03 0.69 16 13 C 0.51 11.13 7.67 -10.99 -0.08 11.04 16 14 O -0.52 -13.55 15.56 5.56 0.09 -13.46 16 15 C -0.13 -2.82 4.19 -27.88 -0.12 -2.93 16 16 C 0.04 1.06 4.26 -27.88 -0.12 0.94 16 17 C -0.52 -15.51 9.11 -34.44 -0.31 -15.83 16 18 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 20 N -0.89 -28.37 13.29 55.43 0.74 -27.63 16 21 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 24 H -0.28 -7.03 7.11 56.52 0.40 -6.62 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.91 6.44 -51.93 -0.33 0.58 16 27 H 0.06 0.56 7.89 -51.93 -0.41 0.15 16 28 H 0.09 1.63 7.42 -51.93 -0.39 1.25 16 29 H 0.08 0.88 7.89 -51.92 -0.41 0.47 16 30 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 35 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.08 1.55 7.40 -51.93 -0.38 1.16 16 40 H 0.07 1.56 8.11 -51.93 -0.42 1.14 16 41 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 42 H 0.02 0.73 8.10 -51.93 -0.42 0.30 16 43 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -39.54 353.70 -9.37 -48.91 By element: Atomic # 1 Polarization: 3.70 SS G_CDS: -6.95 Total: -3.25 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -2.60 Total: -2.08 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.22 Total: -52.73 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.09 Total: -13.46 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -39.54 -9.37 -48.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362175606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.362 kcal (2) G-P(sol) polarization free energy of solvation -39.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds