Wall clock time and date at job start Tue Mar 31 2020 07:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46497 * 119.99834 * 2 1 4 4 C 1.50701 * 109.47267 * 270.00111 * 3 2 1 5 5 C 1.34852 * 125.96413 * 95.00062 * 4 3 2 6 6 N 1.36319 * 106.68751 * 180.02562 * 5 4 3 7 7 C 1.35425 * 107.39870 * 0.03949 * 6 5 4 8 8 N 1.30096 * 108.62682 * 359.94451 * 7 6 5 9 9 C 1.51039 * 123.98330 * 179.97438 * 7 6 5 10 10 C 1.53403 * 108.24410 * 344.01707 * 9 7 6 11 11 C 1.53220 * 109.20304 * 48.79332 * 10 9 7 12 12 C 1.46468 * 127.77524 * 180.02562 * 6 5 4 13 13 C 1.34777 * 120.00023 * 179.97438 * 2 1 3 14 14 O 1.21273 * 119.99667 * 180.02562 * 13 2 1 15 15 C 1.50698 * 119.99794 * 0.02562 * 13 2 1 16 16 C 1.53004 * 109.46942 * 179.97438 * 15 13 2 17 17 C 1.50698 * 109.46942 * 179.97438 * 16 15 13 18 18 H 1.07994 * 120.00503 * 0.02562 * 17 16 15 19 19 C 1.37885 * 119.99655 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99849 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99913 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.47064 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46841 * 120.00082 * 21 19 17 24 24 H 1.48490 * 109.47152 * 240.00382 * 21 19 17 25 25 H 1.08996 * 109.46832 * 89.99966 * 1 2 3 26 26 H 1.08996 * 109.46989 * 209.99920 * 1 2 3 27 27 H 1.08996 * 109.47215 * 330.00139 * 1 2 3 28 28 H 1.09005 * 109.47177 * 149.99862 * 3 2 1 29 29 H 1.09008 * 109.47121 * 30.00101 * 3 2 1 30 30 H 1.07992 * 126.65972 * 0.02562 * 5 4 3 31 31 H 1.09002 * 109.71592 * 103.71935 * 9 7 6 32 32 H 1.09001 * 109.71479 * 224.31837 * 9 7 6 33 33 H 1.09004 * 109.50552 * 168.76588 * 10 9 7 34 34 H 1.08994 * 109.51016 * 288.90422 * 10 9 7 35 35 H 1.08997 * 109.45505 * 170.53651 * 11 10 9 36 36 H 1.09001 * 109.44849 * 50.56772 * 11 10 9 37 37 H 1.08998 * 109.58157 * 282.60169 * 12 6 5 38 38 H 1.08992 * 109.58559 * 43.01857 * 12 6 5 39 39 H 1.08993 * 109.47251 * 299.99430 * 15 13 2 40 40 H 1.08999 * 109.47463 * 59.99855 * 15 13 2 41 41 H 1.09006 * 109.46638 * 300.00190 * 16 15 13 42 42 H 1.08999 * 109.47009 * 59.99762 * 16 15 13 43 43 H 0.97003 * 119.99902 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 6 1.6838 2.5538 -2.1357 6 7 2.2677 2.6686 -3.3622 7 6 3.3718 1.8844 -3.3601 8 7 3.4728 1.3121 -2.1961 9 6 4.3020 1.7329 -4.5404 10 6 3.5831 2.2596 -5.7891 11 6 2.9827 3.6354 -5.4822 12 6 1.8182 3.4772 -4.4977 13 6 2.1390 -1.1672 0.0005 14 8 3.3517 -1.1671 0.0010 15 6 1.3854 -2.4723 0.0005 16 6 2.3797 -3.6352 0.0005 17 6 1.6262 -4.9403 0.0012 18 1 0.5462 -4.9403 0.0011 19 6 2.3156 -6.1344 0.0007 20 7 3.6308 -6.1343 0.0003 21 14 1.3817 -7.7521 0.0022 22 1 -0.0784 -7.4807 0.0032 23 1 1.7391 -8.5311 -1.2105 24 1 1.7417 -8.5303 1.2145 25 1 -0.3633 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 3.1500 1.1384 0.5139 29 1 1.6084 2.0284 0.5139 30 1 0.7835 3.0476 -1.8016 31 1 5.2109 2.3096 -4.3686 32 1 4.5541 0.6814 -4.6773 33 1 4.2955 2.3469 -6.6095 34 1 2.7872 1.5696 -6.0691 35 1 2.6188 4.0868 -6.4052 36 1 3.7475 4.2752 -5.0419 37 1 0.9845 2.9796 -4.9931 38 1 1.5029 4.4591 -4.1450 39 1 0.7585 -2.5298 0.8903 40 1 0.7591 -2.5302 -0.8896 41 1 3.0064 -3.5774 -0.8895 42 1 3.0064 -3.5774 0.8905 43 1 4.1158 -6.9743 -0.0004 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362175606.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:18:32 Heat of formation + Delta-G solvation = -13.594041 kcal Electronic energy + Delta-G solvation = -23121.767909 eV Core-core repulsion = 19780.315217 eV Total energy + Delta-G solvation = -3341.452691 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.25798 -40.68561 -37.67918 -36.39867 -35.58763 -34.16699 -33.16285 -31.52368 -29.76030 -28.38145 -27.82548 -26.40958 -24.75632 -23.39027 -23.13554 -21.38316 -19.96320 -19.84534 -18.75236 -17.82082 -17.47184 -17.14196 -16.67950 -16.62172 -16.38582 -15.52113 -15.21670 -15.07521 -14.90458 -14.51079 -14.46049 -14.36467 -14.12282 -13.68687 -13.45213 -13.27615 -13.15753 -12.84698 -12.81911 -12.70683 -12.40887 -12.08428 -11.96703 -11.93464 -11.88746 -11.57926 -11.28648 -10.79054 -10.66991 -10.58895 -10.41716 -9.62522 -9.17691 -8.18117 -6.33388 1.06451 1.40592 1.43476 1.56783 1.75019 1.92267 1.94206 2.40997 2.57864 3.14030 3.36684 3.61816 3.71010 3.78937 3.87551 4.10679 4.26424 4.31353 4.35571 4.39758 4.41435 4.47183 4.51814 4.54107 4.63758 4.80263 4.81163 4.83750 4.92658 4.94946 4.97880 5.06055 5.12104 5.24920 5.39724 5.47142 5.60787 5.71051 5.83561 5.85128 6.16550 6.31488 6.50315 6.85212 7.29528 7.36289 7.40800 8.95180 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.019994 B = 0.003361 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.081299 B = 8328.918990 C = 8999.677970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.200 3.800 4 C -0.053 4.053 5 C -0.022 4.022 6 N -0.454 5.454 7 C 0.184 3.816 8 N -0.530 5.530 9 C -0.039 4.039 10 C -0.118 4.118 11 C -0.129 4.129 12 C 0.095 3.905 13 C 0.502 3.498 14 O -0.579 6.579 15 C -0.112 4.112 16 C 0.046 3.954 17 C -0.542 4.542 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.939 5.939 21 Si 0.979 3.021 22 H -0.251 1.251 23 H -0.280 1.280 24 H -0.278 1.278 25 H 0.055 0.945 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.051 0.949 29 H 0.134 0.866 30 H 0.217 0.783 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.115 0.885 39 H 0.105 0.895 40 H 0.092 0.908 41 H -0.027 1.027 42 H -0.020 1.020 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 26.547 -11.230 30.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.347 5.347 3 C 0.076 3.924 4 C -0.183 4.183 5 C -0.157 4.157 6 N -0.137 5.137 7 C -0.079 4.079 8 N -0.250 5.250 9 C -0.078 4.078 10 C -0.156 4.156 11 C -0.166 4.166 12 C -0.025 4.025 13 C 0.292 3.708 14 O -0.458 6.458 15 C -0.152 4.152 16 C 0.008 3.992 17 C -0.580 4.580 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.802 3.198 22 H -0.174 1.174 23 H -0.206 1.206 24 H -0.204 1.204 25 H 0.074 0.926 26 H 0.096 0.904 27 H 0.126 0.874 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.233 0.767 31 H 0.111 0.889 32 H 0.091 0.909 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.138 0.862 36 H 0.092 0.908 37 H 0.114 0.886 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.110 0.890 41 H -0.009 1.009 42 H -0.001 1.001 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -9.767 26.025 -11.104 29.933 hybrid contribution -0.089 -0.750 -0.004 0.755 sum -9.856 25.275 -11.108 29.315 Atomic orbital electron populations 1.22043 0.76769 1.05158 1.02519 1.48040 1.08458 1.04662 1.73524 1.19638 0.97375 0.85233 0.90104 1.21363 0.95435 1.02644 0.98814 1.22780 1.02347 1.05211 0.85406 1.45673 1.20421 1.35057 1.12537 1.23783 0.92161 0.95551 0.96403 1.70026 1.26130 1.25404 1.03409 1.20318 0.95801 1.02811 0.88836 1.21681 1.00820 0.96908 0.96208 1.21936 0.97054 0.97374 1.00236 1.22382 0.98971 0.96183 0.84972 1.21399 0.87797 0.86897 0.74715 1.90662 1.16737 1.87969 1.50415 1.21603 0.99145 0.90462 1.03967 1.18658 0.93610 0.92736 0.94188 1.21729 0.93964 0.91469 1.50844 0.90501 1.26228 0.95770 1.04199 0.94525 1.70218 1.08483 1.27777 1.51440 0.85199 0.79281 0.77664 0.77626 1.17389 1.20574 1.20396 0.92595 0.90384 0.87351 0.93027 0.84811 0.76680 0.88897 0.90937 0.87897 0.91780 0.86174 0.90835 0.88634 0.86685 0.87659 0.88995 1.00883 1.00130 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.58 10.29 127.77 1.31 2.90 16 2 N -0.61 -20.12 2.86 -851.13 -2.43 -22.56 16 3 C 0.20 6.02 5.99 85.63 0.51 6.53 16 4 C -0.05 -1.67 6.68 41.41 0.28 -1.40 16 5 C -0.02 -0.48 11.55 83.22 0.96 0.49 16 6 N -0.45 -9.54 3.13 -513.76 -1.61 -11.15 16 7 C 0.18 5.43 7.65 138.23 1.06 6.48 16 8 N -0.53 -20.76 11.24 -175.69 -1.98 -22.74 16 9 C -0.04 -0.86 6.33 30.09 0.19 -0.67 16 10 C -0.12 -1.50 5.97 30.80 0.18 -1.32 16 11 C -0.13 -1.01 5.94 30.77 0.18 -0.83 16 12 C 0.10 0.94 6.98 86.49 0.60 1.55 16 13 C 0.50 23.00 7.67 87.66 0.67 23.67 16 14 O -0.58 -33.26 15.56 -3.01 -0.05 -33.31 16 15 C -0.11 -5.12 4.19 29.85 0.13 -4.99 16 16 C 0.05 2.79 4.26 29.85 0.13 2.91 16 17 C -0.54 -32.73 9.11 25.60 0.23 -32.49 16 18 H 0.08 4.21 7.74 -2.91 -0.02 4.19 16 19 C -0.01 -0.62 5.46 84.66 0.46 -0.16 16 20 N -0.94 -62.54 13.29 21.45 0.28 -62.26 16 21 Si 0.98 46.04 29.54 68.60 2.03 48.06 16 22 H -0.25 -10.79 7.11 99.48 0.71 -10.08 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.08 1.61 6.44 -2.39 -0.02 1.60 16 27 H 0.11 1.32 7.89 -2.39 -0.02 1.30 16 28 H 0.05 1.96 7.42 -2.38 -0.02 1.94 16 29 H 0.13 2.49 7.89 -2.38 -0.02 2.47 16 30 H 0.22 2.44 8.06 -2.91 -0.02 2.42 16 31 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.06 0.91 8.12 -2.39 -0.02 0.89 16 35 H 0.12 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.07 0.65 8.12 -2.39 -0.02 0.63 16 37 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.11 4.16 7.40 -2.39 -0.02 4.14 16 40 H 0.09 3.84 8.11 -2.39 -0.02 3.82 16 41 H -0.03 -1.90 8.10 -2.38 -0.02 -1.92 16 42 H -0.02 -1.35 8.10 -2.39 -0.02 -1.37 16 43 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -96.96 353.70 4.13 -92.83 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.98 Total: 8.46 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: 6.90 Total: 2.67 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -5.73 Total: -118.71 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.05 Total: -33.31 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.06 kcal Total: -96.96 4.13 -92.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362175606.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.237 kcal (2) G-P(sol) polarization free energy of solvation -96.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds