Wall clock time and date at job start Tue Mar 31 2020 07:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35204 * 126.00393 * 2 1 4 4 C 1.34569 * 107.61660 * 179.97438 * 3 2 1 5 5 C 1.40489 * 108.03820 * 0.08304 * 4 3 2 6 6 N 1.30124 * 108.23003 * 359.61300 * 5 4 3 7 7 C 1.50954 * 123.48374 * 179.80500 * 5 4 3 8 8 C 1.53374 * 108.20447 * 343.40721 * 7 5 4 9 9 C 1.53022 * 109.74872 * 50.64959 * 8 7 5 10 10 C 1.50885 * 128.32650 * 180.27076 * 4 3 2 11 11 H 1.08999 * 109.71455 * 282.94660 * 10 4 3 12 12 C 1.50699 * 109.71652 * 43.59324 * 10 4 3 13 13 O 1.21281 * 120.00020 * 120.00243 * 12 10 4 14 14 N 1.34774 * 120.00244 * 300.00472 * 12 10 4 15 15 C 1.46502 * 119.99953 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47189 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47242 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47228 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99892 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00408 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99846 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00418 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47155 * 60.00150 * 22 20 18 24 24 H 1.48506 * 109.47436 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46982 * 299.99946 * 22 20 18 26 26 H 1.09002 * 109.47391 * 89.99390 * 1 2 3 27 27 H 1.09001 * 109.46813 * 329.99447 * 1 2 3 28 28 H 1.09004 * 109.47041 * 209.99574 * 1 2 3 29 29 H 1.08000 * 126.18997 * 0.02562 * 3 2 1 30 30 H 1.09000 * 109.71758 * 103.08232 * 7 5 4 31 31 H 1.08996 * 109.71710 * 223.68509 * 7 5 4 32 32 H 1.08997 * 109.42104 * 170.73395 * 8 7 5 33 33 H 1.08997 * 109.42505 * 290.61373 * 8 7 5 34 34 H 1.09000 * 109.43445 * 48.34450 * 9 8 7 35 35 H 1.09002 * 109.42605 * 168.24876 * 9 8 7 36 36 H 0.96994 * 119.99971 * 0.02562 * 14 12 10 37 37 H 1.09009 * 109.47072 * 299.99298 * 15 14 12 38 38 H 1.09000 * 109.47653 * 59.99329 * 15 14 12 39 39 H 1.08995 * 109.46775 * 299.99750 * 16 15 14 40 40 H 1.08998 * 109.47049 * 59.99696 * 16 15 14 41 41 H 1.09009 * 109.47291 * 299.99585 * 17 16 15 42 42 H 1.08998 * 109.47101 * 60.00029 * 17 16 15 43 43 H 0.97004 * 120.00303 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0938 0.0000 4 6 3.5368 0.6693 0.0006 5 6 3.5282 -0.7356 -0.0010 6 7 2.2898 -1.1351 0.0059 7 6 4.7821 -1.5760 -0.0052 8 6 5.9565 -0.6825 -0.4233 9 6 5.9636 0.5919 0.4237 10 6 4.7981 1.4974 0.0064 11 1 4.9811 1.8955 -0.9916 12 6 4.6574 2.6311 0.9891 13 8 5.4277 2.7249 1.9212 14 7 3.6755 3.5409 0.8324 15 6 3.5391 4.6434 1.7874 16 6 2.3560 5.5253 1.3829 17 6 2.2132 6.6763 2.3807 18 6 1.0476 7.5445 1.9826 19 1 0.4670 7.3000 1.1053 20 6 0.7230 8.6515 2.7375 21 7 1.4303 8.9496 3.8055 22 14 -0.7215 9.7282 2.2436 23 1 -1.9656 8.9173 2.2425 24 1 -0.8602 10.8453 3.2122 25 1 -0.4873 10.2774 0.8840 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 0.8900 0.5139 28 1 -0.3633 -0.8901 0.5138 29 1 1.9295 2.1220 0.0004 30 1 4.9609 -1.9749 0.9934 31 1 4.6726 -2.3963 -0.7145 32 1 6.8924 -1.2213 -0.2755 33 1 5.8534 -0.4170 -1.4754 34 1 5.8591 0.3284 1.4762 35 1 6.9046 1.1213 0.2742 36 1 3.0591 3.4658 0.0872 37 1 3.3675 4.2403 2.7856 38 1 4.4521 5.2388 1.7880 39 1 2.5280 5.9283 0.3849 40 1 1.4429 4.9302 1.3820 41 1 2.0410 6.2729 3.3786 42 1 3.1263 7.2715 2.3819 43 1 1.2017 9.7282 4.3370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373961756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:29 Heat of formation + Delta-G solvation = 14.900188 kcal Electronic energy + Delta-G solvation = -22990.813271 eV Core-core repulsion = 19650.596182 eV Total energy + Delta-G solvation = -3340.217089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.78771 -39.47597 -36.71427 -35.36654 -33.44773 -32.90008 -32.21559 -30.93801 -28.85046 -27.50296 -26.64488 -24.20377 -22.95261 -21.97304 -21.18302 -20.78346 -19.85545 -18.96313 -17.00602 -16.74273 -16.39577 -15.77513 -15.46302 -15.29887 -14.97773 -14.79783 -14.48160 -14.19673 -13.50846 -13.46773 -13.06968 -13.05098 -12.88433 -12.55392 -12.30306 -11.96009 -11.85746 -11.66173 -11.37895 -11.14213 -11.00741 -10.91426 -10.76628 -10.65754 -10.56110 -9.90398 -9.86928 -9.43839 -9.37570 -9.15845 -8.76971 -8.45421 -8.40146 -6.04714 -4.08282 1.69852 2.26880 2.49157 2.89768 3.29013 3.34190 3.35294 3.44383 4.11321 4.41095 4.52684 4.60483 4.72226 4.78439 4.80600 4.93384 5.11864 5.19259 5.23648 5.30648 5.30896 5.32943 5.46113 5.60892 5.68977 5.74370 5.75458 5.87566 5.95276 6.00258 6.13034 6.24434 6.45113 6.49480 6.56085 6.79293 6.80664 6.97029 7.53658 7.59831 7.70113 7.72727 7.93641 8.33896 8.42257 8.98193 9.56001 11.06494 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.003229 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.930466 B = 8668.822077 C = 9774.608748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.380 5.380 3 C 0.067 3.933 4 C -0.234 4.234 5 C 0.087 3.913 6 N -0.291 5.291 7 C -0.039 4.039 8 C -0.114 4.114 9 C -0.099 4.099 10 C -0.026 4.026 11 H 0.101 0.899 12 C 0.518 3.482 13 O -0.540 6.540 14 N -0.728 5.728 15 C 0.115 3.885 16 C -0.120 4.120 17 C 0.024 3.976 18 C -0.524 4.524 19 H 0.054 0.946 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.088 0.912 29 H 0.173 0.827 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.067 0.933 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.393 0.607 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.054 0.946 40 H 0.052 0.948 41 H 0.019 0.981 42 H 0.019 0.981 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.830 -20.463 -11.188 23.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.161 5.161 3 C -0.078 4.078 4 C -0.246 4.246 5 C -0.081 4.081 6 N -0.112 5.112 7 C -0.078 4.078 8 C -0.152 4.152 9 C -0.137 4.137 10 C -0.048 4.048 11 H 0.119 0.881 12 C 0.303 3.697 13 O -0.417 6.417 14 N -0.380 5.380 15 C -0.008 4.008 16 C -0.158 4.158 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.144 4.144 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.190 0.810 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.228 0.772 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.037 0.963 42 H 0.038 0.962 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.410 -21.235 -10.339 23.863 hybrid contribution -0.928 1.560 -0.537 1.893 sum 2.482 -19.675 -10.876 22.617 Atomic orbital electron populations 1.21891 0.73874 1.04782 1.03398 1.48481 1.06554 1.03266 1.57819 1.22134 0.90707 0.93518 1.01465 1.19620 0.93348 0.93780 1.17804 1.22289 0.93403 0.93398 0.98994 1.77026 1.01127 1.08114 1.24979 1.20154 0.88404 0.96352 1.02871 1.21582 0.97530 0.95877 1.00253 1.21390 0.96740 0.94644 1.00905 1.19745 0.93104 0.92909 0.99077 0.88129 1.20513 0.80476 0.82642 0.86055 1.90690 1.43084 1.75409 1.32482 1.46360 1.32668 1.28249 1.30767 1.21651 1.00141 0.86917 0.92049 1.21887 0.94859 0.97826 1.01275 1.19019 0.97262 0.91401 0.93655 1.21157 1.14027 1.09975 1.11090 0.92738 1.25028 0.96723 0.97655 0.95008 1.69954 1.39643 1.27374 1.16238 0.86647 0.82869 0.80080 0.78318 1.20274 1.21242 1.20222 0.90700 0.89113 0.89316 0.80958 0.89742 0.90010 0.90600 0.91415 0.90578 0.90758 0.77216 0.91826 0.91684 0.92709 0.92973 0.96307 0.96234 0.92828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.47 59.85 0.69 1.44 16 2 N -0.38 -4.31 4.02 -68.29 -0.27 -4.58 16 3 C 0.07 0.75 10.49 -17.36 -0.18 0.57 16 4 C -0.23 -2.76 5.41 -104.98 -0.57 -3.32 16 5 C 0.09 1.04 7.10 -82.34 -0.58 0.46 16 6 N -0.29 -3.80 12.56 33.75 0.42 -3.37 16 7 C -0.04 -0.34 6.31 -27.57 -0.17 -0.52 16 8 C -0.11 -0.89 5.86 -26.53 -0.16 -1.04 16 9 C -0.10 -1.02 4.61 -26.52 -0.12 -1.15 16 10 C -0.03 -0.29 2.90 -92.64 -0.27 -0.56 16 11 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 12 C 0.52 7.67 7.09 -10.99 -0.08 7.59 16 13 O -0.54 -10.11 15.86 5.56 0.09 -10.03 16 14 N -0.73 -10.21 4.96 -60.29 -0.30 -10.51 16 15 C 0.12 1.99 5.67 -4.04 -0.02 1.97 16 16 C -0.12 -2.28 5.27 -26.73 -0.14 -2.42 16 17 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 18 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 19 H 0.05 1.43 7.74 -52.48 -0.41 1.02 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 22 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.17 1.61 5.93 -52.49 -0.31 1.30 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 34 H 0.08 0.93 7.77 -51.93 -0.40 0.53 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.39 4.41 6.14 -40.82 -0.25 4.16 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.02 0.50 8.14 -51.92 -0.42 0.08 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 351.26 15.07 5.29 5.29 Total: -1.00 -34.40 351.26 -8.06 -42.46 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -6.85 Total: 0.14 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -2.16 Total: -9.72 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.59 Total: -44.34 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.09 Total: -10.03 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.40 -8.06 -42.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373961756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.363 kcal (2) G-P(sol) polarization free energy of solvation -34.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds