Wall clock time and date at job start Tue Mar 31 2020 07:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35204 * 126.00393 * 2 1 4 4 C 1.34569 * 107.61660 * 179.97438 * 3 2 1 5 5 C 1.40489 * 108.03820 * 0.08304 * 4 3 2 6 6 N 1.30124 * 108.23003 * 359.61300 * 5 4 3 7 7 C 1.50954 * 123.48374 * 179.80500 * 5 4 3 8 8 C 1.53374 * 108.20447 * 343.40721 * 7 5 4 9 9 C 1.53022 * 109.74872 * 50.64959 * 8 7 5 10 10 C 1.50885 * 128.32650 * 180.27076 * 4 3 2 11 11 H 1.08999 * 109.71455 * 282.94660 * 10 4 3 12 12 C 1.50699 * 109.71652 * 43.59324 * 10 4 3 13 13 O 1.21281 * 120.00020 * 120.00243 * 12 10 4 14 14 N 1.34774 * 120.00244 * 300.00472 * 12 10 4 15 15 C 1.46502 * 119.99953 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.47189 * 179.97438 * 15 14 12 17 17 C 1.52998 * 109.47242 * 179.97438 * 16 15 14 18 18 C 1.50695 * 109.47228 * 180.02562 * 17 16 15 19 19 H 1.08004 * 119.99892 * 359.97438 * 18 17 16 20 20 C 1.37872 * 120.00408 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99846 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00418 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47155 * 60.00150 * 22 20 18 24 24 H 1.48506 * 109.47436 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46982 * 299.99946 * 22 20 18 26 26 H 1.09002 * 109.47391 * 89.99390 * 1 2 3 27 27 H 1.09001 * 109.46813 * 329.99447 * 1 2 3 28 28 H 1.09004 * 109.47041 * 209.99574 * 1 2 3 29 29 H 1.08000 * 126.18997 * 0.02562 * 3 2 1 30 30 H 1.09000 * 109.71758 * 103.08232 * 7 5 4 31 31 H 1.08996 * 109.71710 * 223.68509 * 7 5 4 32 32 H 1.08997 * 109.42104 * 170.73395 * 8 7 5 33 33 H 1.08997 * 109.42505 * 290.61373 * 8 7 5 34 34 H 1.09000 * 109.43445 * 48.34450 * 9 8 7 35 35 H 1.09002 * 109.42605 * 168.24876 * 9 8 7 36 36 H 0.96994 * 119.99971 * 0.02562 * 14 12 10 37 37 H 1.09009 * 109.47072 * 299.99298 * 15 14 12 38 38 H 1.09000 * 109.47653 * 59.99329 * 15 14 12 39 39 H 1.08995 * 109.46775 * 299.99750 * 16 15 14 40 40 H 1.08998 * 109.47049 * 59.99696 * 16 15 14 41 41 H 1.09009 * 109.47291 * 299.99585 * 17 16 15 42 42 H 1.08998 * 109.47101 * 60.00029 * 17 16 15 43 43 H 0.97004 * 120.00303 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2598 1.0938 0.0000 4 6 3.5368 0.6693 0.0006 5 6 3.5282 -0.7356 -0.0010 6 7 2.2898 -1.1351 0.0059 7 6 4.7821 -1.5760 -0.0052 8 6 5.9565 -0.6825 -0.4233 9 6 5.9636 0.5919 0.4237 10 6 4.7981 1.4974 0.0064 11 1 4.9811 1.8955 -0.9916 12 6 4.6574 2.6311 0.9891 13 8 5.4277 2.7249 1.9212 14 7 3.6755 3.5409 0.8324 15 6 3.5391 4.6434 1.7874 16 6 2.3560 5.5253 1.3829 17 6 2.2132 6.6763 2.3807 18 6 1.0476 7.5445 1.9826 19 1 0.4670 7.3000 1.1053 20 6 0.7230 8.6515 2.7375 21 7 1.4303 8.9496 3.8055 22 14 -0.7215 9.7282 2.2436 23 1 -1.9656 8.9173 2.2425 24 1 -0.8602 10.8453 3.2122 25 1 -0.4873 10.2774 0.8840 26 1 -0.3634 0.0001 -1.0277 27 1 -0.3633 0.8900 0.5139 28 1 -0.3633 -0.8901 0.5138 29 1 1.9295 2.1220 0.0004 30 1 4.9609 -1.9749 0.9934 31 1 4.6726 -2.3963 -0.7145 32 1 6.8924 -1.2213 -0.2755 33 1 5.8534 -0.4170 -1.4754 34 1 5.8591 0.3284 1.4762 35 1 6.9046 1.1213 0.2742 36 1 3.0591 3.4658 0.0872 37 1 3.3675 4.2403 2.7856 38 1 4.4521 5.2388 1.7880 39 1 2.5280 5.9283 0.3849 40 1 1.4429 4.9302 1.3820 41 1 2.0410 6.2729 3.3786 42 1 3.1263 7.2715 2.3819 43 1 1.2017 9.7282 4.3370 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373961756.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:03:28 Heat of formation + Delta-G solvation = -7.246250 kcal Electronic energy + Delta-G solvation = -22991.773612 eV Core-core repulsion = 19650.596182 eV Total energy + Delta-G solvation = -3341.177430 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.63950 -40.66376 -37.60328 -36.82433 -35.23494 -33.83892 -33.29868 -32.38360 -29.71479 -28.72938 -27.89905 -25.49799 -24.28429 -22.77281 -22.46704 -22.00202 -21.14108 -19.76908 -18.53898 -18.01906 -17.61637 -16.86093 -16.63559 -16.47478 -16.35871 -15.86855 -15.77192 -15.17915 -14.72145 -14.44341 -14.20600 -13.94476 -13.80900 -13.68979 -13.54157 -13.49996 -13.21931 -12.71844 -12.67207 -12.55641 -12.41268 -12.15618 -11.93616 -11.71969 -11.66730 -11.60387 -11.38844 -11.24376 -10.77444 -10.54729 -10.25514 -10.08241 -9.31136 -8.19213 -6.30974 0.85951 1.41879 1.44721 1.45604 1.52576 1.63983 1.78799 2.26357 2.43180 3.14644 3.34671 3.72890 3.74276 3.90344 4.05764 4.16330 4.19336 4.21769 4.33721 4.42942 4.45133 4.52348 4.55027 4.64206 4.68606 4.72089 4.87625 4.94522 5.00821 5.03976 5.16780 5.17479 5.22369 5.26072 5.42663 5.50126 5.53562 5.66779 5.70752 5.84221 6.04766 6.21911 6.55535 6.69721 6.86839 7.25444 7.38872 8.92723 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.003229 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.930466 B = 8668.822077 C = 9774.608748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.063 3.937 4 C -0.250 4.250 5 C 0.078 3.922 6 N -0.322 5.322 7 C -0.040 4.040 8 C -0.104 4.104 9 C -0.099 4.099 10 C -0.016 4.016 11 H 0.127 0.873 12 C 0.516 3.484 13 O -0.584 6.584 14 N -0.715 5.715 15 C 0.129 3.871 16 C -0.101 4.101 17 C 0.024 3.976 18 C -0.541 4.541 19 H 0.068 0.932 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.288 1.288 25 H -0.265 1.265 26 H 0.092 0.908 27 H 0.105 0.895 28 H 0.091 0.909 29 H 0.190 0.810 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.410 0.590 37 H 0.045 0.955 38 H 0.050 0.950 39 H 0.070 0.930 40 H 0.069 0.931 41 H -0.010 1.010 42 H -0.009 1.009 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 -21.145 -13.535 25.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.166 5.166 3 C -0.083 4.083 4 C -0.262 4.262 5 C -0.090 4.090 6 N -0.144 5.144 7 C -0.079 4.079 8 C -0.142 4.142 9 C -0.137 4.137 10 C -0.038 4.038 11 H 0.145 0.855 12 C 0.303 3.697 13 O -0.463 6.463 14 N -0.368 5.368 15 C 0.005 3.995 16 C -0.139 4.139 17 C -0.014 4.014 18 C -0.579 4.579 19 H 0.087 0.913 20 C -0.201 4.201 21 N -0.576 5.576 22 Si 0.791 3.209 23 H -0.189 1.189 24 H -0.214 1.214 25 H -0.190 1.190 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.109 0.891 29 H 0.206 0.794 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.098 0.902 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.248 0.752 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.008 0.992 42 H 0.009 0.991 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.317 -21.948 -12.731 25.478 hybrid contribution -0.606 1.759 0.235 1.875 sum 1.711 -20.189 -12.495 23.804 Atomic orbital electron populations 1.22187 0.72039 1.05666 1.04820 1.48813 1.07726 1.02872 1.57171 1.22445 0.90766 0.94256 1.00847 1.19745 0.93644 0.93961 1.18809 1.22773 0.93961 0.93910 0.98322 1.76975 1.01855 1.09346 1.26216 1.20295 0.87579 0.96660 1.03388 1.21545 0.98058 0.94402 1.00155 1.21405 0.96443 0.95856 1.00016 1.19747 0.93498 0.91518 0.98995 0.85514 1.21215 0.79486 0.83026 0.85962 1.90674 1.44713 1.76476 1.34483 1.46135 1.33027 1.27118 1.30534 1.21238 0.98807 0.87449 0.92041 1.21600 0.96228 0.96071 1.00004 1.18936 0.95482 0.92992 0.93992 1.21660 1.14553 1.10282 1.11383 0.91333 1.26028 0.99788 0.99402 0.94904 1.70111 1.41728 1.28128 1.17667 0.85479 0.79287 0.77942 0.78207 1.18934 1.21358 1.18953 0.88992 0.87662 0.89054 0.79364 0.89744 0.88539 0.88450 0.90235 0.93033 0.90487 0.75195 0.93639 0.93183 0.91140 0.91193 0.99165 0.99063 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.20 11.47 127.77 1.47 2.67 16 2 N -0.38 -8.13 4.02 -369.97 -1.49 -9.62 16 3 C 0.06 1.30 10.49 83.33 0.87 2.17 16 4 C -0.25 -5.50 5.41 -20.10 -0.11 -5.61 16 5 C 0.08 1.76 7.10 43.44 0.31 2.07 16 6 N -0.32 -8.05 12.56 -47.13 -0.59 -8.65 16 7 C -0.04 -0.64 6.31 30.05 0.19 -0.45 16 8 C -0.10 -1.37 5.86 30.73 0.18 -1.19 16 9 C -0.10 -1.94 4.61 30.73 0.14 -1.80 16 10 C -0.02 -0.33 2.90 -12.10 -0.04 -0.36 16 11 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 12 C 0.52 14.93 7.09 87.66 0.62 15.55 16 13 O -0.58 -22.21 15.86 -3.03 -0.05 -22.26 16 14 N -0.72 -19.17 4.96 -463.05 -2.30 -21.47 16 15 C 0.13 4.46 5.67 86.38 0.49 4.95 16 16 C -0.10 -3.74 5.27 30.59 0.16 -3.57 16 17 C 0.02 1.21 4.97 29.85 0.15 1.36 16 18 C -0.54 -29.56 9.11 25.60 0.23 -29.33 16 19 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 20 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 21 N -0.94 -56.86 13.29 21.45 0.28 -56.58 16 22 Si 0.97 43.04 29.54 68.60 2.03 45.07 16 23 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 24 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 26 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 29 H 0.19 3.04 5.93 -2.91 -0.02 3.02 16 30 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.08 0.90 8.10 -2.39 -0.02 0.88 16 34 H 0.05 1.26 7.77 -2.39 -0.02 1.24 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.41 8.19 6.14 -92.71 -0.57 7.62 16 37 H 0.05 1.74 8.14 -2.38 -0.02 1.73 16 38 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 41 H -0.01 -0.57 8.14 -2.38 -0.02 -0.58 16 42 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 43 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -75.74 351.26 3.45 -72.29 By element: Atomic # 1 Polarization: 14.07 SS G_CDS: 0.43 Total: 14.50 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: 5.13 Total: -13.28 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -4.09 Total: -96.32 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: -0.05 Total: -22.26 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.74 3.45 -72.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373961756.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.043 kcal (2) G-P(sol) polarization free energy of solvation -75.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds