Wall clock time and date at job start Tue Mar 31 2020 07:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35701 * 116.99922 * 2 1 4 4 C 1.39268 * 120.13798 * 180.28100 * 3 2 1 5 5 C 1.38634 * 117.91809 * 180.26558 * 4 3 2 6 6 C 1.38763 * 118.01845 * 359.46144 * 5 4 3 7 7 C 1.50698 * 120.01297 * 180.29714 * 6 5 4 8 8 N 1.46910 * 109.47101 * 95.00291 * 7 6 5 9 9 C 1.46840 * 110.99761 * 294.21381 * 8 7 6 10 10 C 1.53040 * 109.52176 * 174.16116 * 9 8 7 11 11 C 1.53119 * 109.27968 * 59.17532 * 10 9 8 12 12 C 1.53000 * 109.52149 * 182.44364 * 11 10 9 13 13 C 1.50705 * 109.47090 * 294.68084 * 12 11 10 14 14 H 1.08004 * 119.99799 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99942 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00399 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46959 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47024 * 120.00255 * 17 15 13 20 20 H 1.48496 * 109.47327 * 240.00431 * 17 15 13 21 21 C 1.53112 * 109.16036 * 302.34694 * 11 10 9 22 22 C 1.46847 * 110.99846 * 169.99967 * 8 7 6 23 23 N 1.31817 * 119.97620 * 0.27979 * 6 5 4 24 24 N 1.28347 * 122.25792 * 359.97438 * 23 6 5 25 25 H 1.08990 * 109.46972 * 300.00209 * 1 2 3 26 26 H 1.09002 * 109.46616 * 59.99973 * 1 2 3 27 27 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.08000 * 121.03994 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.99348 * 179.74347 * 5 4 3 30 30 H 1.09002 * 109.47578 * 215.00003 * 7 6 5 31 31 H 1.09001 * 109.47364 * 335.00900 * 7 6 5 32 32 H 1.09005 * 109.46505 * 294.17239 * 9 8 7 33 33 H 1.09003 * 109.46926 * 54.14160 * 9 8 7 34 34 H 1.08999 * 109.50066 * 299.23142 * 10 9 8 35 35 H 1.09001 * 109.53704 * 179.13743 * 10 9 8 36 36 H 1.08995 * 109.57223 * 62.28579 * 11 10 9 37 37 H 1.09000 * 109.47364 * 54.67817 * 12 11 10 38 38 H 1.08999 * 109.47106 * 174.68281 * 12 11 10 39 39 H 0.96999 * 120.00720 * 179.97438 * 16 15 13 40 40 H 1.09008 * 109.50742 * 297.71358 * 21 11 10 41 41 H 1.08997 * 109.53868 * 177.61616 * 21 11 10 42 42 H 1.08996 * 109.46627 * 305.85439 * 22 8 7 43 43 H 1.09000 * 109.46000 * 65.84098 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4357 1.2854 -0.0059 5 6 4.0167 2.5440 0.0000 6 6 3.1778 3.6493 0.0000 7 6 3.7614 5.0387 -0.0005 8 7 3.8394 5.5367 -1.3804 9 6 4.7952 4.7501 -2.1704 10 6 4.7435 5.2006 -3.6321 11 6 5.0882 6.6902 -3.7146 12 6 4.9787 7.1606 -5.1663 13 6 6.0278 6.4695 -5.9988 14 1 6.7046 5.7648 -5.5385 15 6 6.1228 6.7360 -7.3482 16 7 5.2984 7.5936 -7.9088 17 14 7.4227 5.8787 -8.3803 18 1 8.2177 4.9677 -7.5182 19 1 6.7633 5.0932 -9.4542 20 1 8.3200 6.8934 -8.9889 21 6 4.1078 7.4818 -2.8448 22 6 4.1780 6.9653 -1.4059 23 7 1.8701 3.4836 0.0000 24 7 1.3270 2.3207 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0424 0.3919 -0.0110 29 1 5.0904 2.6609 0.0000 30 1 3.1262 5.6999 0.5890 31 1 4.7610 5.0131 0.4335 32 1 5.8013 4.9016 -1.7791 33 1 4.5363 3.6932 -2.1066 34 1 3.7413 5.0364 -4.0281 35 1 5.4638 4.6275 -4.2158 36 1 6.1048 6.8501 -3.3555 37 1 3.9893 6.9174 -5.5535 38 1 5.1315 8.2389 -5.2113 39 1 5.3655 7.7814 -8.8581 40 1 3.0955 7.3537 -3.2285 41 1 4.3736 8.5387 -2.8654 42 1 3.4707 7.5174 -0.7870 43 1 5.1870 7.1064 -1.0185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399425903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:07 Heat of formation + Delta-G solvation = 11.294142 kcal Electronic energy + Delta-G solvation = -23013.658101 eV Core-core repulsion = 19673.284643 eV Total energy + Delta-G solvation = -3340.373459 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.44372 -39.08741 -38.38032 -34.97083 -33.41770 -32.67471 -31.56153 -30.37047 -28.46847 -27.76496 -26.09852 -24.40304 -23.72960 -22.82086 -22.15058 -20.63269 -18.97426 -18.77909 -17.88653 -16.56166 -16.26494 -16.13899 -15.68964 -14.97671 -14.58875 -14.49463 -14.35520 -14.18558 -14.08530 -13.47866 -13.25242 -12.86046 -12.48884 -12.30390 -12.09603 -11.94135 -11.75949 -11.68046 -11.30796 -11.08859 -10.81033 -10.65655 -10.60462 -10.44529 -10.27248 -9.93519 -9.75686 -9.52958 -9.23370 -9.04788 -8.85431 -8.31838 -8.14769 -5.96190 -3.97674 0.57183 0.79170 2.64354 3.29027 3.31878 3.39575 3.42637 3.84652 4.08396 4.21428 4.42659 4.48116 4.61035 4.79110 4.94423 5.01902 5.09736 5.21844 5.32497 5.33266 5.38377 5.40952 5.49165 5.56010 5.68198 5.76677 5.86486 5.90127 5.94140 6.11657 6.23156 6.43733 6.57536 6.66919 6.74737 6.98294 7.09468 7.20504 7.26631 7.33403 7.72406 7.89219 8.04861 8.47611 8.54063 9.09185 9.65761 11.15187 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.003288 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.093586 B = 8514.598142 C = 9293.758086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.304 6.304 3 C 0.256 3.744 4 C -0.135 4.135 5 C -0.079 4.079 6 C 0.055 3.945 7 C 0.111 3.889 8 N -0.529 5.529 9 C 0.052 3.948 10 C -0.099 4.099 11 C -0.081 4.081 12 C 0.027 3.973 13 C -0.513 4.513 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.895 5.895 17 Si 0.888 3.112 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.112 4.112 22 C 0.062 3.938 23 N -0.184 5.184 24 N -0.300 5.300 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.100 0.900 28 H 0.155 0.845 29 H 0.155 0.845 30 H 0.095 0.905 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.052 0.948 37 H 0.016 0.984 38 H 0.014 0.986 39 H 0.259 0.741 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.069 0.931 43 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 -11.533 19.606 23.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.208 6.208 3 C 0.071 3.929 4 C -0.164 4.164 5 C -0.108 4.108 6 C -0.093 4.093 7 C -0.018 4.018 8 N -0.254 5.254 9 C -0.075 4.075 10 C -0.137 4.137 11 C -0.099 4.099 12 C -0.010 4.010 13 C -0.552 4.552 14 H 0.073 0.927 15 C -0.145 4.145 16 N -0.535 5.535 17 Si 0.716 3.284 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.150 4.150 22 C -0.065 4.065 23 N -0.028 5.028 24 N -0.155 5.155 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.118 0.882 28 H 0.173 0.827 29 H 0.173 0.827 30 H 0.113 0.887 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.070 0.930 37 H 0.035 0.965 38 H 0.033 0.967 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.088 0.912 43 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -6.310 -11.161 19.225 23.108 hybrid contribution 2.676 -1.042 -0.423 2.902 sum -3.634 -12.202 18.802 22.707 Atomic orbital electron populations 1.22994 0.76576 1.03423 1.03002 1.86221 1.23398 1.23513 1.87663 1.21511 0.90972 0.87249 0.93207 1.21509 0.92403 0.99820 1.02714 1.22253 1.02289 0.91373 0.94836 1.22605 0.91397 0.97119 0.98203 1.20794 0.98936 0.90243 0.91857 1.61883 1.50743 1.03594 1.09208 1.22291 0.92568 0.96743 0.95902 1.21537 1.02296 0.97430 0.92423 1.21229 0.96716 0.93546 0.98443 1.19122 0.97115 0.96214 0.88510 1.21289 1.16262 1.24413 0.93221 0.92699 1.25020 0.96017 0.95358 0.98132 1.69971 1.37467 1.34608 1.11471 0.86607 0.81836 0.79514 0.80465 1.19823 1.21102 1.21112 1.21700 1.01221 0.99050 0.93046 1.22118 0.98485 0.86961 0.98954 1.72733 1.10930 1.12982 1.06141 1.73095 1.31901 0.94261 1.16278 0.91948 0.91755 0.88200 0.82684 0.82740 0.88688 0.92983 0.95129 0.92085 0.91926 0.90895 0.92992 0.96515 0.96717 0.93150 0.91480 0.91937 0.91213 0.95129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.40 101.05 1.05 1.33 16 2 O -0.30 -3.27 10.49 -18.81 -0.20 -3.47 16 3 C 0.26 3.09 7.57 -16.95 -0.13 2.96 16 4 C -0.13 -1.33 10.16 -39.05 -0.40 -1.73 16 5 C -0.08 -0.77 8.36 -39.24 -0.33 -1.10 16 6 C 0.05 0.67 5.71 -82.41 -0.47 0.20 16 7 C 0.11 1.27 5.31 -4.97 -0.03 1.24 16 8 N -0.53 -7.55 4.65 -236.10 -1.10 -8.65 16 9 C 0.05 0.78 5.21 -3.84 -0.02 0.76 16 10 C -0.10 -1.86 5.15 -26.65 -0.14 -2.00 16 11 C -0.08 -1.63 2.20 -90.50 -0.20 -1.82 16 12 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 13 C -0.51 -14.30 8.45 -34.44 -0.29 -14.59 16 14 H 0.05 1.48 7.08 -52.48 -0.37 1.11 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 C -0.11 -1.93 5.38 -26.65 -0.14 -2.07 16 22 C 0.06 0.87 5.46 -3.83 -0.02 0.85 16 23 N -0.18 -2.69 11.42 33.61 0.38 -2.31 16 24 N -0.30 -4.21 10.41 30.50 0.32 -3.90 16 25 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 26 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.16 1.09 8.06 -52.49 -0.42 0.66 16 29 H 0.15 1.08 8.06 -52.49 -0.42 0.65 16 30 H 0.09 1.02 7.99 -51.93 -0.41 0.61 16 31 H 0.05 0.49 8.04 -51.93 -0.42 0.07 16 32 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.86 6.06 -51.93 -0.31 0.54 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.07 1.45 7.05 -51.93 -0.37 1.08 16 36 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 1.23 8.14 -51.92 -0.42 0.80 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.07 0.86 8.01 -51.93 -0.42 0.45 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 348.53 15.07 5.25 5.25 Total: -1.00 -32.45 348.53 -7.89 -40.33 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -6.93 Total: -3.68 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -1.33 Total: -13.90 kcal Atomic # 7 Polarization: -41.51 SS G_CDS: 0.34 Total: -41.17 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: -0.20 Total: -3.47 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.45 -7.89 -40.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399425903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.626 kcal (2) G-P(sol) polarization free energy of solvation -32.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds