Wall clock time and date at job start Tue Mar 31 2020 07:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35701 * 116.99922 * 2 1 4 4 C 1.39268 * 120.13798 * 180.28100 * 3 2 1 5 5 C 1.38634 * 117.91809 * 180.26558 * 4 3 2 6 6 C 1.38763 * 118.01845 * 359.46144 * 5 4 3 7 7 C 1.50698 * 120.01297 * 180.29714 * 6 5 4 8 8 N 1.46910 * 109.47101 * 95.00291 * 7 6 5 9 9 C 1.46840 * 110.99761 * 294.21381 * 8 7 6 10 10 C 1.53040 * 109.52176 * 174.16116 * 9 8 7 11 11 C 1.53119 * 109.27968 * 59.17532 * 10 9 8 12 12 C 1.53000 * 109.52149 * 182.44364 * 11 10 9 13 13 C 1.50705 * 109.47090 * 294.68084 * 12 11 10 14 14 H 1.08004 * 119.99799 * 0.02562 * 13 12 11 15 15 C 1.37871 * 119.99942 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00399 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 120.00043 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.46959 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47024 * 120.00255 * 17 15 13 20 20 H 1.48496 * 109.47327 * 240.00431 * 17 15 13 21 21 C 1.53112 * 109.16036 * 302.34694 * 11 10 9 22 22 C 1.46847 * 110.99846 * 169.99967 * 8 7 6 23 23 N 1.31817 * 119.97620 * 0.27979 * 6 5 4 24 24 N 1.28347 * 122.25792 * 359.97438 * 23 6 5 25 25 H 1.08990 * 109.46972 * 300.00209 * 1 2 3 26 26 H 1.09002 * 109.46616 * 59.99973 * 1 2 3 27 27 H 1.08998 * 109.46898 * 179.97438 * 1 2 3 28 28 H 1.08000 * 121.03994 * 0.02562 * 4 3 2 29 29 H 1.08002 * 120.99348 * 179.74347 * 5 4 3 30 30 H 1.09002 * 109.47578 * 215.00003 * 7 6 5 31 31 H 1.09001 * 109.47364 * 335.00900 * 7 6 5 32 32 H 1.09005 * 109.46505 * 294.17239 * 9 8 7 33 33 H 1.09003 * 109.46926 * 54.14160 * 9 8 7 34 34 H 1.08999 * 109.50066 * 299.23142 * 10 9 8 35 35 H 1.09001 * 109.53704 * 179.13743 * 10 9 8 36 36 H 1.08995 * 109.57223 * 62.28579 * 11 10 9 37 37 H 1.09000 * 109.47364 * 54.67817 * 12 11 10 38 38 H 1.08999 * 109.47106 * 174.68281 * 12 11 10 39 39 H 0.96999 * 120.00720 * 179.97438 * 16 15 13 40 40 H 1.09008 * 109.50742 * 297.71358 * 21 11 10 41 41 H 1.08997 * 109.53868 * 177.61616 * 21 11 10 42 42 H 1.08996 * 109.46627 * 305.85439 * 22 8 7 43 43 H 1.09000 * 109.46000 * 65.84098 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2091 0.0000 4 6 3.4357 1.2854 -0.0059 5 6 4.0167 2.5440 0.0000 6 6 3.1778 3.6493 0.0000 7 6 3.7614 5.0387 -0.0005 8 7 3.8394 5.5367 -1.3804 9 6 4.7952 4.7501 -2.1704 10 6 4.7435 5.2006 -3.6321 11 6 5.0882 6.6902 -3.7146 12 6 4.9787 7.1606 -5.1663 13 6 6.0278 6.4695 -5.9988 14 1 6.7046 5.7648 -5.5385 15 6 6.1228 6.7360 -7.3482 16 7 5.2984 7.5936 -7.9088 17 14 7.4227 5.8787 -8.3803 18 1 8.2177 4.9677 -7.5182 19 1 6.7633 5.0932 -9.4542 20 1 8.3200 6.8934 -8.9889 21 6 4.1078 7.4818 -2.8448 22 6 4.1780 6.9653 -1.4059 23 7 1.8701 3.4836 0.0000 24 7 1.3270 2.3207 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 4.0424 0.3919 -0.0110 29 1 5.0904 2.6609 0.0000 30 1 3.1262 5.6999 0.5890 31 1 4.7610 5.0131 0.4335 32 1 5.8013 4.9016 -1.7791 33 1 4.5363 3.6932 -2.1066 34 1 3.7413 5.0364 -4.0281 35 1 5.4638 4.6275 -4.2158 36 1 6.1048 6.8501 -3.3555 37 1 3.9893 6.9174 -5.5535 38 1 5.1315 8.2389 -5.2113 39 1 5.3655 7.7814 -8.8581 40 1 3.0955 7.3537 -3.2285 41 1 4.3736 8.5387 -2.8654 42 1 3.4707 7.5174 -0.7870 43 1 5.1870 7.1064 -1.0185 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399425903.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:27:06 Heat of formation + Delta-G solvation = -12.153883 kcal Electronic energy + Delta-G solvation = -23014.674884 eV Core-core repulsion = 19673.284643 eV Total energy + Delta-G solvation = -3341.390241 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.29007 -40.16176 -39.35902 -36.42506 -34.67847 -34.04967 -32.82583 -31.65855 -29.98032 -28.56867 -27.43056 -25.53834 -25.02965 -24.03078 -23.35302 -22.10336 -20.42908 -19.61168 -18.71191 -18.42542 -17.41580 -17.09594 -16.72384 -16.46694 -15.82896 -15.51482 -15.26438 -15.15820 -15.06893 -14.93164 -14.66800 -14.14887 -14.04483 -13.52179 -13.30572 -13.09396 -12.94825 -12.88714 -12.64583 -12.49023 -12.45130 -12.19306 -12.10592 -11.98659 -11.63048 -11.28539 -11.19931 -10.85592 -10.69194 -10.59824 -10.51975 -10.09611 -9.17986 -8.16583 -6.26363 -0.21155 -0.04579 1.39644 1.40055 1.52816 1.90480 2.40833 2.42092 3.00454 3.13209 3.17075 3.38515 3.66764 3.91306 3.97714 4.05161 4.09579 4.14850 4.33260 4.36315 4.38564 4.46934 4.52685 4.62344 4.66542 4.70658 4.74172 4.80913 4.85375 4.97386 4.97546 5.10555 5.14845 5.18106 5.40395 5.43617 5.46397 5.59250 5.82503 5.90754 5.96474 6.18012 6.19953 6.31165 6.90688 7.42204 7.66769 8.95702 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.003288 C = 0.003012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.093586 B = 8514.598142 C = 9293.758086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.309 6.309 3 C 0.242 3.758 4 C -0.131 4.131 5 C -0.072 4.072 6 C 0.046 3.954 7 C 0.115 3.885 8 N -0.550 5.550 9 C 0.065 3.935 10 C -0.095 4.095 11 C -0.072 4.072 12 C 0.032 3.968 13 C -0.526 4.526 14 H 0.063 0.937 15 C -0.005 4.005 16 N -0.938 5.938 17 Si 0.961 3.039 18 H -0.258 1.258 19 H -0.282 1.282 20 H -0.280 1.280 21 C -0.109 4.109 22 C 0.071 3.929 23 N -0.224 5.224 24 N -0.331 5.331 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.131 0.869 28 H 0.187 0.813 29 H 0.191 0.809 30 H 0.099 0.901 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.058 0.942 36 H 0.057 0.943 37 H -0.019 1.019 38 H -0.014 1.014 39 H 0.261 0.739 40 H 0.045 0.955 41 H 0.065 0.935 42 H 0.090 0.910 43 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 -13.221 21.435 25.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.213 6.213 3 C 0.056 3.944 4 C -0.160 4.160 5 C -0.101 4.101 6 C -0.103 4.103 7 C -0.014 4.014 8 N -0.276 5.276 9 C -0.062 4.062 10 C -0.133 4.133 11 C -0.091 4.091 12 C -0.005 4.005 13 C -0.564 4.564 14 H 0.082 0.918 15 C -0.202 4.202 16 N -0.579 5.579 17 Si 0.786 3.214 18 H -0.182 1.182 19 H -0.208 1.208 20 H -0.205 1.205 21 C -0.147 4.147 22 C -0.056 4.056 23 N -0.067 5.067 24 N -0.186 5.186 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.149 0.851 28 H 0.204 0.796 29 H 0.208 0.792 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.075 0.925 37 H -0.001 1.001 38 H 0.005 0.995 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.108 0.892 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.172 -12.855 21.080 25.041 hybrid contribution 1.943 -0.519 -1.010 2.250 sum -2.230 -13.374 20.070 24.221 Atomic orbital electron populations 1.23176 0.75529 1.05256 1.02346 1.86223 1.24525 1.23013 1.87563 1.21860 0.92149 0.87156 0.93194 1.21932 0.91661 1.01204 1.01198 1.22636 1.03736 0.90414 0.93283 1.22874 0.91083 0.98327 0.98062 1.20866 1.00718 0.89799 0.89986 1.61749 1.50928 1.03609 1.11313 1.22093 0.93985 0.97231 0.92920 1.21407 1.00069 0.96162 0.95627 1.21070 0.97902 0.94989 0.95143 1.19026 0.94728 0.94428 0.92318 1.21697 1.16541 1.24357 0.93834 0.91842 1.25994 0.98393 0.96105 0.99730 1.70120 1.39507 1.36316 1.11921 0.85453 0.78899 0.78493 0.78553 1.18179 1.20824 1.20542 1.21614 0.98965 0.99030 0.95083 1.22013 1.00222 0.87067 0.96290 1.72634 1.12605 1.13552 1.07886 1.72971 1.33001 0.94815 1.17786 0.92142 0.92901 0.85103 0.79618 0.79193 0.88243 0.89683 0.92997 0.90998 0.94665 0.92369 0.92461 1.00072 0.99529 0.93023 0.93582 0.91653 0.89210 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 10.40 113.37 1.18 1.67 16 2 O -0.31 -6.32 10.49 -90.21 -0.95 -7.27 16 3 C 0.24 5.59 7.57 84.86 0.64 6.23 16 4 C -0.13 -2.22 10.16 22.61 0.23 -1.99 16 5 C -0.07 -1.16 8.36 22.49 0.19 -0.98 16 6 C 0.05 1.01 5.71 42.69 0.24 1.26 16 7 C 0.11 2.23 5.31 85.55 0.45 2.69 16 8 N -0.55 -14.36 4.65 -900.90 -4.19 -18.55 16 9 C 0.07 1.77 5.21 86.33 0.45 2.22 16 10 C -0.09 -3.55 5.15 30.65 0.16 -3.39 16 11 C -0.07 -2.94 2.20 -10.72 -0.02 -2.96 16 12 C 0.03 1.72 4.45 29.85 0.13 1.85 16 13 C -0.53 -29.82 8.45 25.60 0.22 -29.61 16 14 H 0.06 3.41 7.08 -2.91 -0.02 3.39 16 15 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 16 N -0.94 -58.32 13.29 21.44 0.28 -58.03 16 17 Si 0.96 44.58 29.54 68.60 2.03 46.61 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 21 C -0.11 -3.73 5.38 30.65 0.16 -3.56 16 22 C 0.07 1.81 5.46 86.33 0.47 2.28 16 23 N -0.22 -6.42 11.42 -47.59 -0.54 -6.97 16 24 N -0.33 -9.27 10.41 -170.22 -1.77 -11.04 16 25 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 26 H 0.05 0.94 8.11 -2.39 -0.02 0.92 16 27 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.19 1.88 8.06 -2.91 -0.02 1.85 16 29 H 0.19 1.61 8.06 -2.91 -0.02 1.59 16 30 H 0.10 1.86 7.99 -2.39 -0.02 1.84 16 31 H 0.09 1.13 8.04 -2.39 -0.02 1.11 16 32 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.81 6.06 -2.39 -0.01 1.79 16 34 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.06 2.30 7.05 -2.39 -0.02 2.29 16 36 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 37 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 38 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 40 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.09 1.96 8.01 -2.39 -0.02 1.94 16 43 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -73.75 348.53 0.81 -72.93 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 0.98 Total: 6.46 kcal Atomic # 6 Polarization: -29.10 SS G_CDS: 4.97 Total: -24.13 kcal Atomic # 7 Polarization: -88.37 SS G_CDS: -6.22 Total: -94.59 kcal Atomic # 8 Polarization: -6.32 SS G_CDS: -0.95 Total: -7.27 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -73.75 0.81 -72.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399425903.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.780 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds