Wall clock time and date at job start Tue Mar 31 2020 06:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.34777 * 119.99665 * 180.27868 * 3 2 1 5 5 O 1.21593 * 120.00264 * 359.72086 * 4 3 2 6 6 C 1.47541 * 119.99728 * 179.72391 * 4 3 2 7 7 C 1.40351 * 120.47387 * 179.97438 * 6 4 3 8 8 C 1.36860 * 118.49132 * 180.02562 * 7 6 4 9 9 C 1.39395 * 119.37949 * 359.97438 * 8 7 6 10 10 N 1.38455 * 119.54044 * 179.97438 * 9 8 7 11 11 C 1.46503 * 119.99831 * 359.97438 * 10 9 8 12 12 C 1.52996 * 109.46955 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47026 * 299.99705 * 12 11 10 14 14 C 1.52998 * 109.47711 * 59.99905 * 12 11 10 15 15 C 1.50703 * 109.47028 * 179.97438 * 12 11 10 16 16 H 1.08002 * 119.99893 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00225 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99765 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00271 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47257 * 89.99821 * 19 17 15 21 21 H 1.48503 * 109.47148 * 210.00369 * 19 17 15 22 22 H 1.48499 * 109.46736 * 329.99910 * 19 17 15 23 23 N 1.32608 * 120.92090 * 0.02562 * 9 8 7 24 24 C 1.31672 * 121.63729 * 359.70030 * 23 9 8 25 25 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46638 * 300.00121 * 1 2 3 27 27 H 1.09006 * 109.47139 * 60.00254 * 1 2 3 28 28 H 1.09009 * 109.46730 * 239.99787 * 2 1 3 29 29 H 1.08998 * 109.46846 * 120.00332 * 2 1 3 30 30 H 0.97001 * 119.99790 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.75443 * 359.97438 * 7 6 4 32 32 H 1.07994 * 120.30807 * 179.97438 * 8 7 6 33 33 H 0.96997 * 120.00182 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47062 * 300.00053 * 11 10 9 35 35 H 1.08997 * 109.46930 * 59.99807 * 11 10 9 36 36 H 1.08993 * 109.46876 * 60.00780 * 13 12 11 37 37 H 1.09005 * 109.46673 * 180.02562 * 13 12 11 38 38 H 1.08998 * 109.47017 * 300.00108 * 13 12 11 39 39 H 1.09002 * 109.47009 * 59.99850 * 14 12 11 40 40 H 1.08998 * 109.47797 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.47071 * 300.00625 * 14 12 11 42 42 H 0.97006 * 119.99879 * 180.02562 * 18 17 15 43 43 H 1.08005 * 119.74440 * 180.29020 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0057 5 8 4.1336 0.7032 -0.0057 6 6 3.8353 3.0184 -0.0118 7 6 5.2130 3.2862 -0.0172 8 6 5.6243 4.5916 -0.0223 9 6 4.6713 5.6089 -0.0225 10 7 5.0837 6.9306 -0.0271 11 6 6.5130 7.2519 -0.0311 12 6 6.6942 8.7711 -0.0351 13 6 6.0356 9.3599 -1.2843 14 6 6.0413 9.3660 1.2141 15 6 8.1645 9.1016 -0.0386 16 1 8.8965 8.3075 -0.0376 17 6 8.5752 10.4178 -0.0431 18 7 7.6839 11.3848 -0.0438 19 14 10.3977 10.8275 -0.0481 20 1 10.8777 10.9323 -1.4495 21 1 10.6162 12.1210 0.6480 22 1 11.1481 9.7550 0.6532 23 7 3.3752 5.3284 -0.0174 24 6 2.9373 4.0866 -0.0177 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 5.9322 2.4806 -0.0165 32 1 6.6773 4.8312 -0.0261 33 1 4.4263 7.6437 -0.0269 34 1 6.9822 6.8327 0.8590 35 1 6.9782 6.8277 -0.9209 36 1 4.9722 9.1209 -1.2813 37 1 6.1650 10.4422 -1.2873 38 1 6.5008 8.9362 -2.1743 39 1 6.5105 8.9464 2.1041 40 1 6.1707 10.4482 1.2116 41 1 4.9779 9.1268 1.2172 42 1 7.9728 12.3108 -0.0473 43 1 1.8747 3.8932 -0.0182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413399826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:18 Heat of formation + Delta-G solvation = -9.569560 kcal Electronic energy + Delta-G solvation = -22579.708651 eV Core-core repulsion = 19238.430474 eV Total energy + Delta-G solvation = -3341.278177 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.50051 -39.13317 -37.06396 -35.44996 -34.19580 -32.36658 -31.62196 -30.85151 -28.90551 -25.91493 -25.79777 -25.14964 -23.77903 -23.18959 -22.37976 -20.64332 -18.85651 -18.09960 -17.27657 -16.73640 -15.86971 -15.69676 -15.66504 -14.92237 -14.62941 -14.58955 -13.96422 -13.95792 -13.81571 -13.07040 -13.04500 -12.86664 -12.81947 -12.51761 -12.17126 -12.08440 -11.80900 -11.56987 -11.27355 -11.00671 -10.76144 -10.54309 -10.26367 -10.13089 -10.02535 -9.77829 -9.52428 -9.48845 -9.27429 -9.24509 -8.88730 -8.46670 -7.44175 -6.09929 -4.21333 1.03385 1.50280 3.00816 3.07277 3.22798 3.30423 3.32188 3.49644 4.10610 4.32755 4.53946 4.69434 4.78626 4.88014 4.99643 5.02686 5.16965 5.20315 5.35792 5.49976 5.60340 5.71950 5.80038 5.91839 6.07365 6.10409 6.25383 6.31075 6.36469 6.56772 6.66348 6.77349 6.86998 6.91905 7.15611 7.32561 7.38577 7.47118 7.60789 7.86700 7.92228 8.04150 8.17982 8.26069 8.34326 8.78712 9.45129 10.91398 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.041420 B = 0.002676 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.840616 B =10460.298999 C =10934.470400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.735 5.735 4 C 0.575 3.425 5 O -0.550 6.550 6 C -0.282 4.282 7 C 0.027 3.973 8 C -0.249 4.249 9 C 0.432 3.568 10 N -0.692 5.692 11 C 0.129 3.871 12 C 0.058 3.942 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.509 4.509 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.883 5.883 19 Si 0.894 3.106 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 N -0.558 5.558 24 C 0.194 3.806 25 H 0.073 0.927 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.398 0.602 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.407 0.593 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.008 0.992 37 H 0.086 0.914 38 H 0.027 0.973 39 H 0.027 0.973 40 H 0.086 0.914 41 H 0.008 0.992 42 H 0.261 0.739 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.341 -15.187 0.050 19.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.388 5.388 4 C 0.365 3.635 5 O -0.429 6.429 6 C -0.291 4.291 7 C 0.001 3.999 8 C -0.274 4.274 9 C 0.193 3.807 10 N -0.318 5.318 11 C 0.007 3.993 12 C 0.058 3.942 13 C -0.190 4.190 14 C -0.190 4.190 15 C -0.548 4.548 16 H 0.076 0.924 17 C -0.135 4.135 18 N -0.521 5.521 19 Si 0.722 3.278 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 N -0.277 5.277 24 C 0.031 3.969 25 H 0.092 0.908 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.234 0.766 31 H 0.157 0.843 32 H 0.157 0.843 33 H 0.244 0.756 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.027 0.973 37 H 0.105 0.895 38 H 0.046 0.954 39 H 0.046 0.954 40 H 0.105 0.895 41 H 0.027 0.973 42 H 0.071 0.929 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.098 -14.850 0.060 19.154 hybrid contribution 0.959 0.232 -0.016 0.987 sum -11.138 -14.618 0.044 18.378 Atomic orbital electron populations 1.22016 0.94516 1.03183 1.02620 1.21263 0.94087 0.83069 1.02371 1.45943 1.07130 1.08778 1.76974 1.18041 0.81798 0.88557 0.75154 1.90745 1.55394 1.46009 1.50744 1.20316 0.95377 0.93271 1.20177 1.21046 0.94369 0.96318 0.88167 1.21199 1.00830 0.92199 1.13207 1.18760 0.88607 0.86798 0.86570 1.45248 1.09718 1.02798 1.74005 1.21974 0.76977 1.00278 1.00117 1.18337 0.96274 0.86544 0.93086 1.21842 0.94973 1.04808 0.97394 1.21840 0.94974 1.04806 0.97384 1.20927 0.90241 0.92143 1.51488 0.92398 1.24887 0.97613 0.96333 0.94660 1.69804 1.32738 0.99532 1.50073 0.86555 0.85236 0.77839 0.78144 1.20670 1.21218 1.19893 1.67269 1.14960 1.22440 1.23007 1.22449 0.98698 0.86508 0.89222 0.90846 0.91901 0.91911 0.91569 0.91561 0.76644 0.84328 0.84278 0.75550 0.92458 0.92452 0.97299 0.89497 0.95398 0.95395 0.89498 0.97306 0.92877 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.81 10.03 37.16 0.37 -0.44 16 2 C 0.12 0.92 6.39 -4.04 -0.03 0.89 16 3 N -0.73 -6.85 5.51 -61.34 -0.34 -7.19 16 4 C 0.58 7.59 7.77 -12.47 -0.10 7.49 16 5 O -0.55 -9.11 16.41 5.28 0.09 -9.02 16 6 C -0.28 -3.77 5.89 -104.82 -0.62 -4.39 16 7 C 0.03 0.38 9.65 -39.29 -0.38 0.00 16 8 C -0.25 -3.75 9.25 -39.65 -0.37 -4.11 16 9 C 0.43 7.04 7.64 -155.28 -1.19 5.85 16 10 N -0.69 -11.90 5.11 -60.45 -0.31 -12.21 16 11 C 0.13 2.43 3.70 -4.04 -0.01 2.42 16 12 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 13 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 14 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 15 C -0.51 -12.64 8.01 -34.44 -0.28 -12.92 16 16 H 0.06 1.42 7.74 -52.49 -0.41 1.02 16 17 C 0.07 1.70 5.15 -17.82 -0.09 1.61 16 18 N -0.88 -23.01 9.35 55.43 0.52 -22.49 16 19 Si 0.89 20.06 29.54 -169.99 -5.02 15.04 16 20 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 23 N -0.56 -8.57 10.38 -12.14 -0.13 -8.70 16 24 C 0.19 2.43 10.71 -17.13 -0.18 2.24 16 25 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.40 2.68 6.52 -40.82 -0.27 2.41 16 31 H 0.14 1.85 7.73 -52.49 -0.41 1.44 16 32 H 0.14 2.00 6.66 -52.49 -0.35 1.65 16 33 H 0.41 7.10 6.28 -40.82 -0.26 6.85 16 34 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 35 H 0.06 1.07 7.91 -51.93 -0.41 0.66 16 36 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 37 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 38 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.09 2.13 6.07 -51.93 -0.32 1.82 16 41 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 42 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 43 H 0.15 1.27 6.41 -52.48 -0.34 0.93 16 LS Contribution 346.80 15.07 5.23 5.23 Total: -1.00 -28.46 346.80 -8.58 -37.04 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.28 Total: 7.68 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: -2.34 Total: -5.38 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: -0.25 Total: -50.58 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.46 -8.58 -37.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413399826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.473 kcal (2) G-P(sol) polarization free energy of solvation -28.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds