Wall clock time and date at job start Tue Mar 31 2020 06:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47198 * 2 1 4 4 C 1.34777 * 119.99665 * 180.27868 * 3 2 1 5 5 O 1.21593 * 120.00264 * 359.72086 * 4 3 2 6 6 C 1.47541 * 119.99728 * 179.72391 * 4 3 2 7 7 C 1.40351 * 120.47387 * 179.97438 * 6 4 3 8 8 C 1.36860 * 118.49132 * 180.02562 * 7 6 4 9 9 C 1.39395 * 119.37949 * 359.97438 * 8 7 6 10 10 N 1.38455 * 119.54044 * 179.97438 * 9 8 7 11 11 C 1.46503 * 119.99831 * 359.97438 * 10 9 8 12 12 C 1.52996 * 109.46955 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47026 * 299.99705 * 12 11 10 14 14 C 1.52998 * 109.47711 * 59.99905 * 12 11 10 15 15 C 1.50703 * 109.47028 * 179.97438 * 12 11 10 16 16 H 1.08002 * 119.99893 * 359.97438 * 15 12 11 17 17 C 1.37878 * 120.00225 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99765 * 0.02562 * 17 15 12 19 19 Si 1.86800 * 120.00271 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.47257 * 89.99821 * 19 17 15 21 21 H 1.48503 * 109.47148 * 210.00369 * 19 17 15 22 22 H 1.48499 * 109.46736 * 329.99910 * 19 17 15 23 23 N 1.32608 * 120.92090 * 0.02562 * 9 8 7 24 24 C 1.31672 * 121.63729 * 359.70030 * 23 9 8 25 25 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46638 * 300.00121 * 1 2 3 27 27 H 1.09006 * 109.47139 * 60.00254 * 1 2 3 28 28 H 1.09009 * 109.46730 * 239.99787 * 2 1 3 29 29 H 1.08998 * 109.46846 * 120.00332 * 2 1 3 30 30 H 0.97001 * 119.99790 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.75443 * 359.97438 * 7 6 4 32 32 H 1.07994 * 120.30807 * 179.97438 * 8 7 6 33 33 H 0.96997 * 120.00182 * 180.02562 * 10 9 8 34 34 H 1.09002 * 109.47062 * 300.00053 * 11 10 9 35 35 H 1.08997 * 109.46930 * 59.99807 * 11 10 9 36 36 H 1.08993 * 109.46876 * 60.00780 * 13 12 11 37 37 H 1.09005 * 109.46673 * 180.02562 * 13 12 11 38 38 H 1.08998 * 109.47017 * 300.00108 * 13 12 11 39 39 H 1.09002 * 109.47009 * 59.99850 * 14 12 11 40 40 H 1.08998 * 109.47797 * 179.97438 * 14 12 11 41 41 H 1.08997 * 109.47071 * 300.00625 * 14 12 11 42 42 H 0.97006 * 119.99879 * 180.02562 * 18 17 15 43 43 H 1.08005 * 119.74440 * 180.29020 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 -0.0057 5 8 4.1336 0.7032 -0.0057 6 6 3.8353 3.0184 -0.0118 7 6 5.2130 3.2862 -0.0172 8 6 5.6243 4.5916 -0.0223 9 6 4.6713 5.6089 -0.0225 10 7 5.0837 6.9306 -0.0271 11 6 6.5130 7.2519 -0.0311 12 6 6.6942 8.7711 -0.0351 13 6 6.0356 9.3599 -1.2843 14 6 6.0413 9.3660 1.2141 15 6 8.1645 9.1016 -0.0386 16 1 8.8965 8.3075 -0.0376 17 6 8.5752 10.4178 -0.0431 18 7 7.6839 11.3848 -0.0438 19 14 10.3977 10.8275 -0.0481 20 1 10.8777 10.9323 -1.4495 21 1 10.6162 12.1210 0.6480 22 1 11.1481 9.7550 0.6532 23 7 3.3752 5.3284 -0.0174 24 6 2.9373 4.0866 -0.0177 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 5.9322 2.4806 -0.0165 32 1 6.6773 4.8312 -0.0261 33 1 4.4263 7.6437 -0.0269 34 1 6.9822 6.8327 0.8590 35 1 6.9782 6.8277 -0.9209 36 1 4.9722 9.1209 -1.2813 37 1 6.1650 10.4422 -1.2873 38 1 6.5008 8.9362 -2.1743 39 1 6.5105 8.9464 2.1041 40 1 6.1707 10.4482 1.2116 41 1 4.9779 9.1268 1.2172 42 1 7.9728 12.3108 -0.0473 43 1 1.8747 3.8932 -0.0182 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413399826.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:59:17 Heat of formation + Delta-G solvation = -26.591925 kcal Electronic energy + Delta-G solvation = -22580.446796 eV Core-core repulsion = 19238.430474 eV Total energy + Delta-G solvation = -3342.016322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.60688 -40.22483 -38.59864 -36.30500 -35.70038 -33.56241 -33.11977 -31.88835 -29.96511 -27.58505 -27.54168 -26.80015 -24.72047 -24.37986 -23.24831 -21.70158 -20.52335 -19.24469 -18.44932 -17.87872 -17.62777 -16.76876 -16.51854 -16.49291 -15.81186 -15.78916 -15.30687 -15.08851 -14.94239 -14.54831 -14.37632 -14.11727 -13.99576 -13.52698 -13.27240 -13.22979 -13.08960 -12.76073 -12.62880 -12.57609 -12.34938 -12.30620 -12.11940 -11.58524 -11.26478 -11.17379 -11.13824 -10.82026 -10.71496 -10.41087 -10.38096 -10.10150 -8.67756 -8.01742 -6.17960 -0.08047 0.38867 1.43881 1.47358 1.54412 1.93129 2.18509 2.24574 2.48640 2.99123 3.22681 3.55475 3.86078 3.91167 4.05109 4.16209 4.24675 4.27883 4.39932 4.50497 4.56948 4.67943 4.75128 4.90943 4.96688 4.97626 5.04728 5.10930 5.12200 5.18226 5.20656 5.32967 5.40915 5.47902 5.53294 5.64868 5.67850 5.95531 6.11478 6.20774 6.41509 6.55910 6.60562 6.87834 7.10458 7.24686 7.50358 8.97347 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.041420 B = 0.002676 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 675.840616 B =10460.298999 C =10934.470400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 N -0.717 5.717 4 C 0.573 3.427 5 O -0.589 6.589 6 C -0.280 4.280 7 C 0.022 3.978 8 C -0.256 4.256 9 C 0.419 3.581 10 N -0.697 5.697 11 C 0.147 3.853 12 C 0.051 3.949 13 C -0.122 4.122 14 C -0.122 4.122 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.024 3.976 18 N -0.902 5.902 19 Si 0.946 3.054 20 H -0.280 1.280 21 H -0.288 1.288 22 H -0.271 1.271 23 N -0.570 5.570 24 C 0.200 3.800 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.413 0.587 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.405 0.595 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.028 0.972 37 H 0.059 0.941 38 H 0.022 0.978 39 H 0.022 0.978 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.259 0.741 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.986 -16.559 0.057 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.012 4.012 3 N -0.370 5.370 4 C 0.362 3.638 5 O -0.471 6.471 6 C -0.289 4.289 7 C -0.004 4.004 8 C -0.281 4.281 9 C 0.180 3.820 10 N -0.324 5.324 11 C 0.024 3.976 12 C 0.051 3.949 13 C -0.180 4.180 14 C -0.180 4.180 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.176 4.176 18 N -0.541 5.541 19 Si 0.773 3.227 20 H -0.206 1.206 21 H -0.214 1.214 22 H -0.196 1.196 23 N -0.288 5.288 24 C 0.039 3.961 25 H 0.103 0.897 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.251 0.749 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.242 0.758 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.078 0.922 38 H 0.041 0.959 39 H 0.041 0.959 40 H 0.078 0.922 41 H 0.047 0.953 42 H 0.068 0.932 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.799 -16.242 0.067 21.312 hybrid contribution 1.370 0.531 -0.018 1.469 sum -12.429 -15.711 0.048 20.033 Atomic orbital electron populations 1.21974 0.91726 1.04299 1.03429 1.21412 0.96289 0.81931 1.01594 1.45872 1.06045 1.10136 1.74943 1.18052 0.82785 0.87893 0.75036 1.90732 1.56672 1.46894 1.52825 1.20483 0.95285 0.93896 1.19264 1.21192 0.95214 0.96107 0.87847 1.21233 1.00869 0.92336 1.13659 1.18859 0.89365 0.86402 0.87338 1.44975 1.08651 1.03291 1.75509 1.21566 0.78218 0.97759 1.00079 1.18339 0.94871 0.88796 0.92932 1.21681 0.96237 1.02840 0.97218 1.21679 0.96236 1.02841 0.97208 1.21270 0.91853 0.92107 1.50895 0.92679 1.25508 1.00662 0.96530 0.94850 1.69935 1.33875 0.99495 1.50806 0.85739 0.81658 0.77384 0.77897 1.20634 1.21402 1.19575 1.67314 1.14461 1.23718 1.23322 1.23048 1.00480 0.85185 0.87430 0.89650 0.91054 0.91061 0.92414 0.92402 0.74888 0.83944 0.84135 0.75795 0.92556 0.92521 0.95308 0.92176 0.95889 0.95881 0.92177 0.95317 0.93188 0.79119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 10.03 71.98 0.72 -0.32 16 2 C 0.11 1.54 6.39 86.38 0.55 2.09 16 3 N -0.72 -11.51 5.51 -466.25 -2.57 -14.08 16 4 C 0.57 14.14 7.77 86.70 0.67 14.81 16 5 O -0.59 -19.10 16.41 -4.01 -0.07 -19.17 16 6 C -0.28 -6.97 5.89 -19.99 -0.12 -7.08 16 7 C 0.02 0.61 9.65 22.46 0.22 0.82 16 8 C -0.26 -7.47 9.25 22.23 0.21 -7.27 16 9 C 0.42 13.09 7.64 133.25 1.02 14.11 16 10 N -0.70 -23.26 5.11 -345.17 -1.76 -25.03 16 11 C 0.15 5.46 3.70 86.38 0.32 5.78 16 12 C 0.05 2.25 0.50 -52.93 -0.03 2.23 16 13 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 14 C -0.12 -5.36 8.08 71.98 0.58 -4.78 16 15 C -0.52 -26.01 8.01 25.60 0.21 -25.81 16 16 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 17 C 0.02 1.23 5.15 84.66 0.44 1.67 16 18 N -0.90 -47.66 9.35 21.45 0.20 -47.46 16 19 Si 0.95 41.32 29.54 68.60 2.03 43.35 16 20 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 21 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 N -0.57 -16.27 10.38 -192.33 -2.00 -18.26 16 24 C 0.20 4.45 10.71 85.04 0.91 5.36 16 25 H 0.08 0.41 8.14 -2.39 -0.02 0.40 16 26 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.07 0.39 8.14 -2.38 -0.02 0.37 16 28 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.41 4.03 6.52 -92.71 -0.60 3.42 16 31 H 0.14 3.74 7.73 -2.91 -0.02 3.71 16 32 H 0.14 3.98 6.66 -2.91 -0.02 3.96 16 33 H 0.40 13.63 6.28 -92.71 -0.58 13.05 16 34 H 0.06 2.08 7.91 -2.39 -0.02 2.06 16 35 H 0.06 2.08 7.91 -2.39 -0.02 2.07 16 36 H 0.03 1.11 6.86 -2.39 -0.02 1.09 16 37 H 0.06 2.98 6.07 -2.38 -0.01 2.96 16 38 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.06 2.98 6.07 -2.39 -0.01 2.96 16 41 H 0.03 1.10 6.86 -2.39 -0.02 1.09 16 42 H 0.26 13.25 8.31 -92.70 -0.77 12.48 16 43 H 0.19 2.43 6.41 -2.91 -0.02 2.41 16 Total: -1.00 -61.14 346.80 1.95 -59.19 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.16 Total: 24.63 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: 6.28 Total: -3.18 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -6.13 Total: -104.82 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.07 Total: -19.17 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 2.03 Total: 43.35 kcal Total: -61.14 1.95 -59.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413399826.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.596 kcal (2) G-P(sol) polarization free energy of solvation -61.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds