Wall clock time and date at job start Tue Mar 31 2020 06:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.46971 * 2 1 4 4 C 1.46902 * 111.00137 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47542 * 180.02562 * 4 3 2 6 6 C 1.38311 * 119.96570 * 270.27837 * 5 4 3 7 7 C 1.38254 * 120.14001 * 180.27756 * 6 5 4 8 8 C 1.38136 * 120.07005 * 359.43724 * 7 6 5 9 9 C 1.38841 * 119.93088 * 0.28473 * 8 7 6 10 10 N 1.39940 * 120.07073 * 179.97438 * 9 8 7 11 11 C 1.34784 * 120.00205 * 144.91153 * 10 9 8 12 12 O 1.21588 * 119.99524 * 4.58997 * 11 10 9 13 13 N 1.34770 * 120.00154 * 184.58581 * 11 10 9 14 14 C 1.46506 * 120.00238 * 0.02562 * 13 11 10 15 15 C 1.46503 * 120.00145 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46677 * 90.00647 * 15 13 11 17 17 H 1.08002 * 120.00096 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99702 * 180.02562 * 16 15 13 19 19 N 1.31512 * 119.99725 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00228 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47314 * 90.00000 * 20 18 16 22 22 H 1.48498 * 109.47000 * 210.00063 * 20 18 16 23 23 H 1.48501 * 109.47008 * 329.99961 * 20 18 16 24 24 C 1.38090 * 119.96938 * 89.99817 * 5 4 3 25 25 H 1.08995 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46922 * 300.00242 * 1 2 3 27 27 H 1.08999 * 109.47272 * 60.00214 * 1 2 3 28 28 H 1.09002 * 109.47635 * 240.00331 * 2 1 3 29 29 H 1.08999 * 109.47272 * 119.99786 * 2 1 3 30 30 H 1.00905 * 111.00576 * 303.95332 * 3 2 1 31 31 H 1.09001 * 109.47381 * 60.00224 * 4 3 2 32 32 H 1.09002 * 109.47355 * 300.00021 * 4 3 2 33 33 H 1.08001 * 119.92939 * 0.02562 * 6 5 4 34 34 H 1.07998 * 119.96483 * 179.72665 * 7 6 5 35 35 H 1.07997 * 120.03424 * 180.25369 * 8 7 6 36 36 H 0.97000 * 119.99860 * 324.90871 * 10 9 8 37 37 H 1.09004 * 109.47209 * 89.98907 * 14 13 11 38 38 H 1.08993 * 109.47210 * 209.99769 * 14 13 11 39 39 H 1.09004 * 109.46830 * 329.99608 * 14 13 11 40 40 H 1.09002 * 109.47414 * 210.00603 * 15 13 11 41 41 H 1.09002 * 109.47028 * 330.00659 * 15 13 11 42 42 H 0.97003 * 120.00135 * 179.97438 * 19 18 16 43 43 H 1.08003 * 120.02881 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 6 3.9524 2.8579 0.0000 6 6 4.1591 3.5177 -1.1979 7 6 4.5906 4.8312 -1.2015 8 6 4.8053 5.4925 -0.0079 9 6 4.5931 4.8348 1.1964 10 7 4.8103 5.5018 2.4073 11 6 4.0221 5.2436 3.4697 12 8 3.1769 4.3722 3.4020 13 7 4.1710 5.9511 4.6070 14 6 5.1892 7.0014 4.6884 15 6 3.3139 5.6708 5.7617 16 6 3.9640 4.6220 6.6268 17 1 4.9201 4.2062 6.3450 18 6 3.3381 4.1933 7.7781 19 7 3.9051 3.2777 8.5328 20 14 1.6848 4.9130 8.2659 21 1 0.5953 4.1006 7.6675 22 1 1.5565 4.9003 9.7453 23 1 1.5884 6.3104 7.7727 24 6 4.1654 3.5135 1.1966 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6441 1.9014 -0.7814 31 1 3.8647 0.9205 -0.8908 32 1 3.8654 0.9202 0.8891 33 1 3.9871 3.0044 -2.1324 34 1 4.7554 5.3422 -2.1385 35 1 5.1384 6.5198 -0.0114 36 1 5.5281 6.1499 2.4820 37 1 4.7585 7.9506 4.3694 38 1 5.5397 7.0887 5.7168 39 1 6.0270 6.7463 4.0394 40 1 3.1741 6.5838 6.3406 41 1 2.3460 5.3079 5.4160 42 1 3.4650 2.9763 9.3430 43 1 3.9998 2.9990 2.1317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415910439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:37 Heat of formation + Delta-G solvation = 9.927918 kcal Electronic energy + Delta-G solvation = -23001.633742 eV Core-core repulsion = 19661.201039 eV Total energy + Delta-G solvation = -3340.432703 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28061 -38.68592 -36.52355 -35.06709 -34.35574 -32.49197 -32.04569 -29.74138 -29.19964 -28.08159 -25.92173 -24.98328 -23.22207 -22.11206 -21.92612 -20.88808 -19.40594 -17.67801 -16.94366 -16.79022 -16.13087 -15.92564 -15.18927 -15.05387 -14.80319 -14.59108 -14.20819 -13.72747 -13.53538 -13.40153 -12.99882 -12.85949 -12.51867 -12.40198 -12.23551 -12.06406 -11.95621 -11.70447 -11.53670 -11.37139 -11.16588 -10.93220 -10.88933 -10.50349 -10.18793 -9.95842 -9.54771 -9.26515 -8.65955 -8.56452 -8.38297 -7.97846 -7.59642 -6.06459 -4.05151 1.43144 1.61493 3.13988 3.32326 3.38047 3.40489 3.65140 4.00622 4.34818 4.41536 4.43664 4.84113 4.95293 5.06297 5.13211 5.25509 5.26265 5.31406 5.41105 5.43946 5.46024 5.59890 5.73467 5.76061 5.80236 5.92888 5.95751 6.04142 6.13661 6.14887 6.47857 6.49817 6.67971 6.69388 6.85420 6.90892 6.99513 7.26884 7.33404 7.36543 7.50184 7.64258 8.47042 8.49812 8.96438 9.17762 9.53953 11.07002 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.004517 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.600260 B = 6197.792430 C = 7910.390629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 N -0.681 5.681 4 C 0.102 3.898 5 C -0.069 4.069 6 C -0.141 4.141 7 C -0.104 4.104 8 C -0.155 4.155 9 C 0.177 3.823 10 N -0.696 5.696 11 C 0.698 3.302 12 O -0.562 6.562 13 N -0.609 5.609 14 C 0.084 3.916 15 C 0.231 3.769 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.876 3.124 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 C -0.096 4.096 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.025 0.975 29 H 0.074 0.926 30 H 0.339 0.661 31 H 0.035 0.965 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.401 0.599 37 H 0.046 0.954 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.032 0.968 41 H 0.039 0.961 42 H 0.264 0.736 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.206 2.388 -19.986 20.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.075 4.075 3 N -0.312 5.312 4 C -0.026 4.026 5 C -0.070 4.070 6 C -0.161 4.161 7 C -0.123 4.123 8 C -0.176 4.176 9 C 0.081 3.919 10 N -0.346 5.346 11 C 0.400 3.600 12 O -0.437 6.437 13 N -0.344 5.344 14 C -0.060 4.060 15 C 0.110 3.890 16 C -0.568 4.568 17 H 0.092 0.908 18 C -0.129 4.129 19 N -0.536 5.536 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.191 1.191 24 C -0.117 4.117 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.157 0.843 31 H 0.053 0.947 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.238 0.762 37 H 0.064 0.936 38 H 0.099 0.901 39 H 0.071 0.929 40 H 0.049 0.951 41 H 0.057 0.943 42 H 0.074 0.926 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.469 1.741 -19.025 19.111 hybrid contribution -0.143 0.456 -0.428 0.642 sum 0.326 2.197 -19.454 19.580 Atomic orbital electron populations 1.21765 0.94943 1.01552 1.02587 1.21932 0.95805 0.89382 1.00361 1.60454 1.07172 1.13414 1.50205 1.20839 0.87891 0.92832 1.01075 1.19601 0.99136 0.95556 0.92752 1.20881 1.02876 0.95256 0.97044 1.20749 0.99868 0.94632 0.97057 1.20837 1.05935 0.99567 0.91288 1.17570 0.98728 0.91164 0.84488 1.42923 1.35748 1.45949 1.09942 1.15894 0.81735 0.82369 0.79995 1.90923 1.37376 1.33376 1.82030 1.47130 1.38051 1.36465 1.12737 1.21613 0.90707 0.90177 1.03521 1.19615 0.90638 0.96622 0.82145 1.21351 1.07600 1.21586 1.06245 0.90799 1.24839 0.97431 0.94616 0.96059 1.69899 1.39027 1.29871 1.14842 0.86852 0.84944 0.80181 0.77711 1.19822 1.21107 1.19070 1.21341 0.98473 0.92630 0.99226 0.92301 0.91447 0.93038 0.95723 0.90798 0.84285 0.94666 0.89979 0.86808 0.86165 0.86173 0.76175 0.93568 0.90078 0.92885 0.95050 0.94324 0.92582 0.83559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.17 37.16 0.38 -1.13 16 2 C 0.05 0.59 6.40 -3.83 -0.02 0.57 16 3 N -0.68 -8.79 6.49 -115.06 -0.75 -9.54 16 4 C 0.10 1.30 5.81 -4.98 -0.03 1.27 16 5 C -0.07 -0.98 5.39 -104.65 -0.56 -1.54 16 6 C -0.14 -1.67 9.70 -39.55 -0.38 -2.05 16 7 C -0.10 -1.18 10.04 -39.61 -0.40 -1.57 16 8 C -0.15 -1.95 9.97 -39.40 -0.39 -2.35 16 9 C 0.18 2.81 6.30 -83.69 -0.53 2.28 16 10 N -0.70 -11.41 5.22 -14.23 -0.07 -11.49 16 11 C 0.70 14.88 8.12 -86.92 -0.71 14.18 16 12 O -0.56 -14.30 13.36 5.29 0.07 -14.23 16 13 N -0.61 -12.72 2.86 -188.73 -0.54 -13.26 16 14 C 0.08 1.27 10.24 59.85 0.61 1.88 16 15 C 0.23 5.70 4.23 -5.19 -0.02 5.68 16 16 C -0.53 -15.31 9.94 -34.44 -0.34 -15.65 16 17 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 18 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 19 N -0.90 -27.86 13.96 55.43 0.77 -27.08 16 20 Si 0.88 21.73 27.47 -169.99 -4.67 17.06 16 21 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 24 C -0.10 -1.65 8.35 -39.40 -0.33 -1.98 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.34 3.94 8.72 -39.29 -0.34 3.60 16 31 H 0.04 0.37 8.09 -51.93 -0.42 -0.05 16 32 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 33 H 0.11 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.40 5.15 6.52 -40.82 -0.27 4.89 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 39 H 0.05 0.65 6.30 -51.93 -0.33 0.32 16 40 H 0.03 0.73 7.13 -51.93 -0.37 0.36 16 41 H 0.04 1.03 6.85 -51.93 -0.36 0.67 16 42 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 43 H 0.15 3.06 6.23 -52.48 -0.33 2.73 16 LS Contribution 355.61 15.07 5.36 5.36 Total: -1.00 -34.81 355.61 -9.29 -44.10 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: -6.64 Total: 7.46 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: -2.82 Total: 1.62 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: -0.59 Total: -61.37 kcal Atomic # 8 Polarization: -14.30 SS G_CDS: 0.07 Total: -14.23 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -34.81 -9.29 -44.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415910439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.027 kcal (2) G-P(sol) polarization free energy of solvation -34.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds