Wall clock time and date at job start Tue Mar 31 2020 06:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46898 * 109.46971 * 2 1 4 4 C 1.46902 * 111.00137 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47542 * 180.02562 * 4 3 2 6 6 C 1.38311 * 119.96570 * 270.27837 * 5 4 3 7 7 C 1.38254 * 120.14001 * 180.27756 * 6 5 4 8 8 C 1.38136 * 120.07005 * 359.43724 * 7 6 5 9 9 C 1.38841 * 119.93088 * 0.28473 * 8 7 6 10 10 N 1.39940 * 120.07073 * 179.97438 * 9 8 7 11 11 C 1.34784 * 120.00205 * 144.91153 * 10 9 8 12 12 O 1.21588 * 119.99524 * 4.58997 * 11 10 9 13 13 N 1.34770 * 120.00154 * 184.58581 * 11 10 9 14 14 C 1.46506 * 120.00238 * 0.02562 * 13 11 10 15 15 C 1.46503 * 120.00145 * 179.97438 * 13 11 10 16 16 C 1.50703 * 109.46677 * 90.00647 * 15 13 11 17 17 H 1.08002 * 120.00096 * 0.02562 * 16 15 13 18 18 C 1.37874 * 119.99702 * 180.02562 * 16 15 13 19 19 N 1.31512 * 119.99725 * 179.97438 * 18 16 15 20 20 Si 1.86799 * 120.00228 * 359.97438 * 18 16 15 21 21 H 1.48497 * 109.47314 * 90.00000 * 20 18 16 22 22 H 1.48498 * 109.47000 * 210.00063 * 20 18 16 23 23 H 1.48501 * 109.47008 * 329.99961 * 20 18 16 24 24 C 1.38090 * 119.96938 * 89.99817 * 5 4 3 25 25 H 1.08995 * 109.47121 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.46922 * 300.00242 * 1 2 3 27 27 H 1.08999 * 109.47272 * 60.00214 * 1 2 3 28 28 H 1.09002 * 109.47635 * 240.00331 * 2 1 3 29 29 H 1.08999 * 109.47272 * 119.99786 * 2 1 3 30 30 H 1.00905 * 111.00576 * 303.95332 * 3 2 1 31 31 H 1.09001 * 109.47381 * 60.00224 * 4 3 2 32 32 H 1.09002 * 109.47355 * 300.00021 * 4 3 2 33 33 H 1.08001 * 119.92939 * 0.02562 * 6 5 4 34 34 H 1.07998 * 119.96483 * 179.72665 * 7 6 5 35 35 H 1.07997 * 120.03424 * 180.25369 * 8 7 6 36 36 H 0.97000 * 119.99860 * 324.90871 * 10 9 8 37 37 H 1.09004 * 109.47209 * 89.98907 * 14 13 11 38 38 H 1.08993 * 109.47210 * 209.99769 * 14 13 11 39 39 H 1.09004 * 109.46830 * 329.99608 * 14 13 11 40 40 H 1.09002 * 109.47414 * 210.00603 * 15 13 11 41 41 H 1.09002 * 109.47028 * 330.00659 * 15 13 11 42 42 H 0.97003 * 120.00135 * 179.97438 * 19 18 16 43 43 H 1.08003 * 120.02881 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 6 3.9524 2.8579 0.0000 6 6 4.1591 3.5177 -1.1979 7 6 4.5906 4.8312 -1.2015 8 6 4.8053 5.4925 -0.0079 9 6 4.5931 4.8348 1.1964 10 7 4.8103 5.5018 2.4073 11 6 4.0221 5.2436 3.4697 12 8 3.1769 4.3722 3.4020 13 7 4.1710 5.9511 4.6070 14 6 5.1892 7.0014 4.6884 15 6 3.3139 5.6708 5.7617 16 6 3.9640 4.6220 6.6268 17 1 4.9201 4.2062 6.3450 18 6 3.3381 4.1933 7.7781 19 7 3.9051 3.2777 8.5328 20 14 1.6848 4.9130 8.2659 21 1 0.5953 4.1006 7.6675 22 1 1.5565 4.9003 9.7453 23 1 1.5884 6.3104 7.7727 24 6 4.1654 3.5135 1.1966 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6441 1.9014 -0.7814 31 1 3.8647 0.9205 -0.8908 32 1 3.8654 0.9202 0.8891 33 1 3.9871 3.0044 -2.1324 34 1 4.7554 5.3422 -2.1385 35 1 5.1384 6.5198 -0.0114 36 1 5.5281 6.1499 2.4820 37 1 4.7585 7.9506 4.3694 38 1 5.5397 7.0887 5.7168 39 1 6.0270 6.7463 4.0394 40 1 3.1741 6.5838 6.3406 41 1 2.3460 5.3079 5.4160 42 1 3.4650 2.9763 9.3430 43 1 3.9998 2.9990 2.1317 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415910439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:37 Heat of formation + Delta-G solvation = -15.366330 kcal Electronic energy + Delta-G solvation = -23002.730583 eV Core-core repulsion = 19661.201039 eV Total energy + Delta-G solvation = -3341.529544 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.68329 -39.93478 -37.57397 -36.70908 -35.77196 -34.61884 -33.04962 -31.11097 -30.36431 -29.63448 -27.41062 -25.98967 -24.93309 -23.31336 -23.01084 -22.07810 -20.92312 -19.15836 -19.10917 -18.10149 -17.31216 -16.91258 -16.67399 -16.54879 -16.03770 -15.88986 -15.51141 -15.12270 -15.06620 -14.56707 -14.48333 -14.07342 -13.93745 -13.68202 -13.66085 -13.29755 -13.28097 -12.88215 -12.85095 -12.64620 -12.47673 -12.36503 -12.06542 -12.04072 -11.90839 -11.75213 -11.32193 -10.91564 -10.82627 -9.70685 -9.54478 -9.33791 -8.93248 -8.34175 -6.39356 0.38164 0.53134 1.32408 1.38088 1.45625 1.71795 2.16862 2.31320 2.86124 2.99134 3.04191 3.42437 3.82369 4.02694 4.18592 4.23101 4.26145 4.31282 4.40005 4.48912 4.54404 4.58121 4.62658 4.67796 4.76508 4.82350 4.87639 4.91443 4.93240 5.08221 5.13282 5.29113 5.42371 5.44685 5.48318 5.58759 5.61837 5.76668 6.00825 6.04136 6.19896 6.26521 6.47984 6.61426 7.00685 7.22563 7.60334 8.83099 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.012578 B = 0.004517 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.600260 B = 6197.792430 C = 7910.390629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.054 3.946 3 N -0.703 5.703 4 C 0.105 3.895 5 C -0.077 4.077 6 C -0.130 4.130 7 C -0.094 4.094 8 C -0.144 4.144 9 C 0.146 3.854 10 N -0.677 5.677 11 C 0.691 3.309 12 O -0.615 6.615 13 N -0.618 5.618 14 C 0.077 3.923 15 C 0.241 3.759 16 C -0.537 4.537 17 H 0.025 0.975 18 C 0.011 3.989 19 N -0.946 5.946 20 Si 0.949 3.051 21 H -0.279 1.279 22 H -0.273 1.273 23 H -0.235 1.235 24 C -0.130 4.130 25 H 0.075 0.925 26 H 0.042 0.958 27 H 0.064 0.936 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.348 0.652 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.148 0.852 34 H 0.164 0.836 35 H 0.152 0.848 36 H 0.419 0.581 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.018 0.982 42 H 0.268 0.732 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.881 4.900 -23.196 23.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 N -0.336 5.336 4 C -0.023 4.023 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.112 4.112 8 C -0.164 4.164 9 C 0.051 3.949 10 N -0.328 5.328 11 C 0.392 3.608 12 O -0.495 6.495 13 N -0.353 5.353 14 C -0.065 4.065 15 C 0.118 3.882 16 C -0.576 4.576 17 H 0.044 0.956 18 C -0.187 4.187 19 N -0.587 5.587 20 Si 0.771 3.229 21 H -0.205 1.205 22 H -0.198 1.198 23 H -0.158 1.158 24 C -0.152 4.152 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.167 0.833 31 H 0.082 0.918 32 H 0.074 0.926 33 H 0.166 0.834 34 H 0.181 0.819 35 H 0.170 0.830 36 H 0.259 0.741 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.036 0.964 42 H 0.077 0.923 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.211 4.307 -22.283 22.697 hybrid contribution 0.071 -0.407 0.443 0.605 sum 0.282 3.901 -21.840 22.188 Atomic orbital electron populations 1.21738 0.94162 1.02498 1.02012 1.21954 0.96427 0.88539 1.00560 1.60393 1.07372 1.14782 1.51086 1.20780 0.88025 0.92424 1.01098 1.19750 0.99235 0.96120 0.92708 1.21266 1.00967 0.95686 0.97034 1.21287 0.97524 0.94253 0.98148 1.21180 1.04368 1.00840 0.90055 1.17863 1.00758 0.91026 0.85290 1.42579 1.35202 1.45950 1.09054 1.16164 0.81830 0.81777 0.81005 1.90891 1.39858 1.35560 1.83183 1.47119 1.38887 1.37701 1.11605 1.21940 0.90469 0.90001 1.04087 1.19271 0.89975 0.96015 0.82913 1.21580 1.06095 1.22713 1.07194 0.95647 1.25850 1.01924 0.94948 0.95929 1.70055 1.41255 1.31693 1.15660 0.85704 0.78620 0.80732 0.77806 1.20471 1.19817 1.15757 1.21096 1.01704 0.93968 0.98420 0.90614 0.93836 0.91706 0.93465 0.92521 0.83345 0.91791 0.92611 0.83413 0.81868 0.82985 0.74085 0.89932 0.90793 0.90089 0.92471 0.96414 0.92262 0.88915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 10.17 71.98 0.73 -2.15 16 2 C 0.05 1.18 6.40 86.30 0.55 1.74 16 3 N -0.70 -18.46 6.49 -517.94 -3.36 -21.82 16 4 C 0.11 2.73 5.81 85.56 0.50 3.23 16 5 C -0.08 -2.17 5.39 -19.88 -0.11 -2.28 16 6 C -0.13 -2.65 9.70 22.29 0.22 -2.43 16 7 C -0.09 -1.68 10.04 22.25 0.22 -1.46 16 8 C -0.14 -3.16 9.97 22.39 0.22 -2.93 16 9 C 0.15 4.61 6.30 38.15 0.24 4.85 16 10 N -0.68 -22.22 5.22 -317.18 -1.65 -23.87 16 11 C 0.69 30.56 8.12 179.05 1.45 32.01 16 12 O -0.62 -33.62 13.36 -3.99 -0.05 -33.68 16 13 N -0.62 -26.17 2.86 -869.28 -2.48 -28.66 16 14 C 0.08 2.20 10.24 127.77 1.31 3.51 16 15 C 0.24 12.10 4.23 85.63 0.36 12.46 16 16 C -0.54 -32.54 9.94 25.60 0.25 -32.28 16 17 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 18 C 0.01 0.69 5.47 84.65 0.46 1.15 16 19 N -0.95 -61.18 13.96 21.45 0.30 -60.88 16 20 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 21 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.23 -9.97 6.54 99.48 0.65 -9.32 16 24 C -0.13 -4.78 8.35 22.39 0.19 -4.60 16 25 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 26 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.35 7.79 8.72 -89.69 -0.78 7.01 16 31 H 0.06 1.26 8.09 -2.39 -0.02 1.24 16 32 H 0.06 1.70 8.08 -2.39 -0.02 1.68 16 33 H 0.15 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 35 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 36 H 0.42 10.11 6.52 -92.71 -0.60 9.50 16 37 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 38 H 0.07 2.23 8.07 -2.39 -0.02 2.21 16 39 H 0.08 1.82 6.30 -2.39 -0.02 1.80 16 40 H 0.06 2.58 7.13 -2.39 -0.02 2.56 16 41 H 0.02 0.97 6.85 -2.39 -0.02 0.95 16 42 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 43 H 0.09 4.38 6.23 -2.91 -0.02 4.36 16 Total: -1.00 -83.98 355.61 0.81 -83.17 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: -0.43 Total: 27.60 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 6.61 Total: 10.82 kcal Atomic # 7 Polarization: -128.03 SS G_CDS: -7.20 Total: -135.23 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.05 Total: -33.68 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -83.98 0.81 -83.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415910439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.807 kcal (2) G-P(sol) polarization free energy of solvation -83.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds