Wall clock time and date at job start Tue Mar 31 2020 06:27:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47036 * 2 1 4 4 C 1.46895 * 111.00025 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.38301 * 119.96551 * 270.27033 * 5 4 3 7 7 C 1.38256 * 120.14378 * 180.27321 * 6 5 4 8 8 C 1.38131 * 120.06785 * 359.45239 * 7 6 5 9 9 C 1.38846 * 119.92822 * 0.27429 * 8 7 6 10 10 N 1.39947 * 120.06952 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00457 * 33.26943 * 10 9 8 12 12 O 1.21592 * 119.99218 * 5.32201 * 11 10 9 13 13 N 1.34768 * 120.00530 * 185.31390 * 11 10 9 14 14 C 1.46501 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47273 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.46834 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99759 * 180.02562 * 16 15 14 19 19 N 1.31526 * 119.99993 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46975 * 59.99964 * 20 18 16 22 22 H 1.48499 * 109.47153 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47250 * 300.00393 * 20 18 16 24 24 C 1.38090 * 119.96851 * 89.99716 * 5 4 3 25 25 H 1.09005 * 109.47284 * 60.00349 * 1 2 3 26 26 H 1.08996 * 109.47209 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47138 * 300.00326 * 1 2 3 28 28 H 1.09000 * 109.47138 * 239.99674 * 2 1 3 29 29 H 1.09002 * 109.46805 * 119.99534 * 2 1 3 30 30 H 1.00900 * 110.99628 * 303.94991 * 3 2 1 31 31 H 1.09003 * 109.47429 * 59.99226 * 4 3 2 32 32 H 1.09008 * 109.46905 * 299.99762 * 4 3 2 33 33 H 1.08006 * 119.93218 * 0.02562 * 6 5 4 34 34 H 1.07995 * 119.96718 * 179.72856 * 7 6 5 35 35 H 1.07997 * 120.03948 * 180.25389 * 8 7 6 36 36 H 0.96998 * 120.00184 * 213.27066 * 10 9 8 37 37 H 0.97005 * 120.00099 * 0.02562 * 13 11 10 38 38 H 1.09003 * 109.47057 * 300.00459 * 14 13 11 39 39 H 1.08996 * 109.47125 * 60.00329 * 14 13 11 40 40 H 1.08996 * 109.46593 * 300.00131 * 15 14 13 41 41 H 1.09006 * 109.46891 * 60.00011 * 15 14 13 42 42 H 0.96990 * 120.00073 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.03223 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 6 3.9523 2.8579 -0.0012 6 6 4.1593 3.5165 -1.1996 7 6 4.5906 4.8300 -1.2045 8 6 4.8054 5.4924 -0.0116 9 6 4.5931 4.8358 1.1933 10 7 4.8103 5.5039 2.4037 11 6 4.5659 6.8260 2.4970 12 8 4.0661 7.4193 1.5608 13 7 4.8754 7.4904 3.6280 14 6 4.6093 8.9274 3.7297 15 6 5.0510 9.4320 5.1049 16 6 4.7778 10.9103 5.2091 17 1 4.3331 11.4372 4.3778 18 6 5.0955 11.5902 6.3658 19 7 5.6375 10.9486 7.3779 20 14 4.7575 13.4228 6.4948 21 1 3.3039 13.6715 6.3203 22 1 5.1862 13.9124 7.8296 23 1 5.5130 14.1412 5.4374 24 6 4.1653 3.5145 1.1948 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6442 1.9012 -0.7814 31 1 3.8647 0.9203 -0.8908 32 1 3.8654 0.9201 0.8892 33 1 3.9874 3.0023 -2.1338 34 1 4.7555 5.3402 -2.1420 35 1 5.1384 6.5197 -0.0159 36 1 5.1368 5.0154 3.1755 37 1 5.2745 7.0170 4.3748 38 1 5.1639 9.4554 2.9539 39 1 3.5423 9.1093 3.6011 40 1 4.4968 8.9040 5.8808 41 1 6.1182 9.2501 5.2330 42 1 5.8607 11.4268 8.1917 43 1 3.9997 3.0010 2.1303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415912434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:41 Heat of formation + Delta-G solvation = -16.392074 kcal Electronic energy + Delta-G solvation = -21786.110819 eV Core-core repulsion = 18444.536795 eV Total energy + Delta-G solvation = -3341.574023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.46955 -38.90492 -36.77904 -35.11044 -34.45790 -32.89379 -32.28871 -30.31171 -29.61734 -28.67856 -25.23972 -24.81953 -22.58439 -22.37391 -22.08505 -20.90197 -20.15772 -18.26504 -17.23770 -16.40948 -16.30128 -16.11242 -15.44416 -15.35754 -14.87587 -14.66889 -14.48867 -14.33096 -13.71645 -13.64895 -13.50042 -13.04031 -12.78253 -12.65674 -12.28434 -12.12570 -11.97381 -11.67718 -11.47566 -11.22310 -11.14372 -11.03455 -10.66174 -10.42705 -10.21473 -9.93182 -9.58582 -9.29787 -8.90578 -8.73077 -8.60325 -8.39863 -7.95602 -6.10058 -4.12952 1.31379 1.35187 2.86836 3.31309 3.34327 3.35090 3.38734 3.73594 4.10810 4.36539 4.52738 4.56864 4.73410 4.77989 4.88769 5.04173 5.10824 5.16434 5.26981 5.28787 5.36210 5.46017 5.54656 5.62156 5.69432 5.83059 5.91417 6.19057 6.33396 6.34836 6.41252 6.52910 6.55730 6.65933 6.73110 6.88952 7.02406 7.08166 7.15013 7.53208 7.60409 7.88422 8.19074 8.31355 8.81513 8.93093 9.51803 11.01514 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.002261 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.862205 B =12382.524158 C =12814.615192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.053 3.947 3 N -0.686 5.686 4 C 0.102 3.898 5 C -0.069 4.069 6 C -0.139 4.139 7 C -0.100 4.100 8 C -0.120 4.120 9 C 0.178 3.822 10 N -0.693 5.693 11 C 0.697 3.303 12 O -0.579 6.579 13 N -0.732 5.732 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.522 4.522 17 H 0.059 0.941 18 C 0.059 3.941 19 N -0.894 5.894 20 Si 0.898 3.102 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.130 4.130 25 H 0.053 0.947 26 H 0.059 0.941 27 H 0.064 0.936 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.343 0.657 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.115 0.885 34 H 0.123 0.877 35 H 0.137 0.863 36 H 0.405 0.595 37 H 0.395 0.605 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.263 0.737 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.090 -22.835 -14.644 27.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.076 4.076 3 N -0.318 5.318 4 C -0.026 4.026 5 C -0.070 4.070 6 C -0.159 4.159 7 C -0.119 4.119 8 C -0.140 4.140 9 C 0.082 3.918 10 N -0.340 5.340 11 C 0.397 3.603 12 O -0.457 6.457 13 N -0.385 5.385 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.561 4.561 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.533 5.533 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.201 1.201 24 C -0.152 4.152 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.240 0.760 37 H 0.229 0.771 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.521 -22.090 -14.548 26.684 hybrid contribution 0.374 0.312 0.086 0.495 sum -3.147 -21.778 -14.462 26.331 Atomic orbital electron populations 1.21773 0.94824 1.01698 1.02638 1.21940 0.95868 0.89369 1.00422 1.60532 1.07222 1.13463 1.50554 1.20832 0.87873 0.92781 1.01157 1.19386 0.99671 0.95306 0.92683 1.20903 1.02745 0.95154 0.97051 1.20970 0.98895 0.94274 0.97719 1.21267 1.00744 1.01187 0.90835 1.17514 0.97429 0.91535 0.85338 1.42750 1.70115 1.08461 1.12702 1.16060 0.79317 0.80739 0.84176 1.90913 1.49178 1.67146 1.38420 1.45583 1.65961 1.11735 1.15224 1.21669 1.00266 0.75370 1.01082 1.19329 0.97134 0.96523 0.89468 1.21000 1.41577 0.93120 1.00357 0.92232 1.25002 0.94946 0.98715 0.95657 1.69946 1.42374 1.36321 1.04670 0.86552 0.78836 0.84869 0.77164 1.20091 1.21257 1.20100 1.20653 1.02247 0.93941 0.98329 0.92809 0.92194 0.91641 0.95452 0.90985 0.83857 0.94380 0.90219 0.86647 0.85904 0.84509 0.75972 0.77143 0.92528 0.92531 0.95909 0.95902 0.92782 0.85805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.17 37.16 0.38 -0.55 16 2 C 0.05 0.35 6.40 -3.82 -0.02 0.33 16 3 N -0.69 -5.71 6.49 -115.05 -0.75 -6.46 16 4 C 0.10 0.82 5.81 -4.98 -0.03 0.79 16 5 C -0.07 -0.70 5.39 -104.65 -0.56 -1.27 16 6 C -0.14 -1.40 9.70 -39.55 -0.38 -1.78 16 7 C -0.10 -1.15 10.04 -39.61 -0.40 -1.55 16 8 C -0.12 -1.70 8.66 -39.40 -0.34 -2.04 16 9 C 0.18 2.41 6.28 -83.69 -0.53 1.88 16 10 N -0.69 -9.33 5.35 -14.23 -0.08 -9.41 16 11 C 0.70 12.19 8.30 -86.93 -0.72 11.47 16 12 O -0.58 -12.23 14.03 5.28 0.07 -12.16 16 13 N -0.73 -12.73 5.56 -65.22 -0.36 -13.09 16 14 C 0.14 2.94 5.61 -4.04 -0.02 2.92 16 15 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 16 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 18 C 0.06 1.64 5.46 -17.81 -0.10 1.54 16 19 N -0.89 -26.02 13.29 55.43 0.74 -25.29 16 20 Si 0.90 21.36 29.54 -169.99 -5.02 16.34 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 24 C -0.13 -1.48 9.62 -39.40 -0.38 -1.86 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.34 2.76 8.72 -39.29 -0.34 2.42 16 31 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.08 0.61 8.09 -51.92 -0.42 0.19 16 33 H 0.12 0.90 8.06 -52.48 -0.42 0.47 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.14 2.22 6.41 -52.49 -0.34 1.88 16 36 H 0.41 4.08 8.83 -40.82 -0.36 3.72 16 37 H 0.40 5.81 8.49 -40.82 -0.35 5.47 16 38 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -32.14 363.34 -10.32 -42.47 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.84 Total: 6.79 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -3.56 Total: -4.67 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.45 Total: -54.25 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.14 -10.32 -42.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415912434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.075 kcal (2) G-P(sol) polarization free energy of solvation -32.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds