Wall clock time and date at job start Tue Mar 31 2020 06:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46903 * 109.47036 * 2 1 4 4 C 1.46895 * 111.00025 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47309 * 179.97438 * 4 3 2 6 6 C 1.38301 * 119.96551 * 270.27033 * 5 4 3 7 7 C 1.38256 * 120.14378 * 180.27321 * 6 5 4 8 8 C 1.38131 * 120.06785 * 359.45239 * 7 6 5 9 9 C 1.38846 * 119.92822 * 0.27429 * 8 7 6 10 10 N 1.39947 * 120.06952 * 179.97438 * 9 8 7 11 11 C 1.34777 * 120.00457 * 33.26943 * 10 9 8 12 12 O 1.21592 * 119.99218 * 5.32201 * 11 10 9 13 13 N 1.34768 * 120.00530 * 185.31390 * 11 10 9 14 14 C 1.46501 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.47273 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.46834 * 179.97438 * 15 14 13 17 17 H 1.08000 * 120.00379 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99759 * 180.02562 * 16 15 14 19 19 N 1.31526 * 119.99993 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00271 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.46975 * 59.99964 * 20 18 16 22 22 H 1.48499 * 109.47153 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47250 * 300.00393 * 20 18 16 24 24 C 1.38090 * 119.96851 * 89.99716 * 5 4 3 25 25 H 1.09005 * 109.47284 * 60.00349 * 1 2 3 26 26 H 1.08996 * 109.47209 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47138 * 300.00326 * 1 2 3 28 28 H 1.09000 * 109.47138 * 239.99674 * 2 1 3 29 29 H 1.09002 * 109.46805 * 119.99534 * 2 1 3 30 30 H 1.00900 * 110.99628 * 303.94991 * 3 2 1 31 31 H 1.09003 * 109.47429 * 59.99226 * 4 3 2 32 32 H 1.09008 * 109.46905 * 299.99762 * 4 3 2 33 33 H 1.08006 * 119.93218 * 0.02562 * 6 5 4 34 34 H 1.07995 * 119.96718 * 179.72856 * 7 6 5 35 35 H 1.07997 * 120.03948 * 180.25389 * 8 7 6 36 36 H 0.96998 * 120.00184 * 213.27066 * 10 9 8 37 37 H 0.97005 * 120.00099 * 0.02562 * 13 11 10 38 38 H 1.09003 * 109.47057 * 300.00459 * 14 13 11 39 39 H 1.08996 * 109.47125 * 60.00329 * 14 13 11 40 40 H 1.08996 * 109.46593 * 300.00131 * 15 14 13 41 41 H 1.09006 * 109.46891 * 60.00011 * 15 14 13 42 42 H 0.96990 * 120.00073 * 180.02562 * 19 18 16 43 43 H 1.08000 * 120.03223 * 0.02562 * 24 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4242 -0.0006 5 6 3.9523 2.8579 -0.0012 6 6 4.1593 3.5165 -1.1996 7 6 4.5906 4.8300 -1.2045 8 6 4.8054 5.4924 -0.0116 9 6 4.5931 4.8358 1.1933 10 7 4.8103 5.5039 2.4037 11 6 4.5659 6.8260 2.4970 12 8 4.0661 7.4193 1.5608 13 7 4.8754 7.4904 3.6280 14 6 4.6093 8.9274 3.7297 15 6 5.0510 9.4320 5.1049 16 6 4.7778 10.9103 5.2091 17 1 4.3331 11.4372 4.3778 18 6 5.0955 11.5902 6.3658 19 7 5.6375 10.9486 7.3779 20 14 4.7575 13.4228 6.4948 21 1 3.3039 13.6715 6.3203 22 1 5.1862 13.9124 7.8296 23 1 5.5130 14.1412 5.4374 24 6 4.1653 3.5145 1.1948 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.6442 1.9012 -0.7814 31 1 3.8647 0.9203 -0.8908 32 1 3.8654 0.9201 0.8892 33 1 3.9874 3.0023 -2.1338 34 1 4.7555 5.3402 -2.1420 35 1 5.1384 6.5197 -0.0159 36 1 5.1368 5.0154 3.1755 37 1 5.2745 7.0170 4.3748 38 1 5.1639 9.4554 2.9539 39 1 3.5423 9.1093 3.6011 40 1 4.4968 8.9040 5.8808 41 1 6.1182 9.2501 5.2330 42 1 5.8607 11.4268 8.1917 43 1 3.9997 3.0010 2.1303 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415912434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:40 Heat of formation + Delta-G solvation = -38.533919 kcal Electronic energy + Delta-G solvation = -21787.070961 eV Core-core repulsion = 18444.536795 eV Total energy + Delta-G solvation = -3342.534166 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68344 -39.96426 -37.52337 -36.64433 -35.71732 -34.83408 -33.06610 -31.81469 -30.58919 -29.79344 -26.74164 -25.94404 -23.76243 -23.18417 -22.91481 -22.60207 -21.33335 -19.60455 -18.44039 -18.27040 -17.20938 -17.04782 -16.57871 -16.48940 -16.16440 -15.97978 -15.70456 -15.25074 -15.15075 -14.91624 -14.54183 -14.27842 -13.93620 -13.64549 -13.41115 -13.22968 -12.95954 -12.82234 -12.56067 -12.53931 -12.41397 -12.25470 -12.01524 -11.95259 -11.67601 -11.53735 -11.36986 -11.09245 -10.59952 -10.10072 -9.75566 -9.35103 -8.98931 -8.23921 -6.34179 0.36946 0.44794 1.42036 1.44648 1.51904 1.61006 2.02716 2.41272 2.82810 3.10868 3.22587 3.45746 3.83622 4.00139 4.21356 4.25351 4.34059 4.40871 4.45261 4.47152 4.50018 4.58406 4.65658 4.72634 4.81389 4.85650 4.99766 5.06713 5.14483 5.24649 5.34692 5.36494 5.42460 5.48688 5.58460 5.61768 5.67069 5.78116 5.98048 6.06757 6.14677 6.16516 6.44972 6.78556 6.97989 7.34840 7.45303 8.87698 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028395 B = 0.002261 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.862205 B =12382.524158 C =12814.615192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.054 3.946 3 N -0.700 5.700 4 C 0.106 3.894 5 C -0.066 4.066 6 C -0.130 4.130 7 C -0.104 4.104 8 C -0.146 4.146 9 C 0.152 3.848 10 N -0.675 5.675 11 C 0.698 3.302 12 O -0.618 6.618 13 N -0.726 5.726 14 C 0.160 3.840 15 C 0.024 3.976 16 C -0.547 4.547 17 H 0.059 0.941 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.965 3.035 21 H -0.269 1.269 22 H -0.281 1.281 23 H -0.269 1.269 24 C -0.128 4.128 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.051 0.949 28 H 0.038 0.962 29 H 0.072 0.928 30 H 0.344 0.656 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.107 0.893 36 H 0.422 0.578 37 H 0.409 0.591 38 H 0.047 0.953 39 H 0.045 0.955 40 H 0.010 0.990 41 H 0.010 0.990 42 H 0.266 0.734 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.529 -24.446 -15.561 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 N -0.333 5.333 4 C -0.022 4.022 5 C -0.067 4.067 6 C -0.149 4.149 7 C -0.123 4.123 8 C -0.167 4.167 9 C 0.057 3.943 10 N -0.324 5.324 11 C 0.398 3.602 12 O -0.498 6.498 13 N -0.380 5.380 14 C 0.036 3.964 15 C -0.014 4.014 16 C -0.585 4.585 17 H 0.078 0.922 18 C -0.192 4.192 19 N -0.565 5.565 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.193 1.193 24 C -0.149 4.149 25 H 0.073 0.927 26 H 0.090 0.910 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.162 0.838 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.125 0.875 36 H 0.260 0.740 37 H 0.245 0.755 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.075 0.925 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.944 -23.768 -15.457 28.626 hybrid contribution 0.501 0.686 0.299 0.900 sum -3.443 -23.083 -15.158 27.829 Atomic orbital electron populations 1.21759 0.94659 1.02324 1.02003 1.21963 0.95979 0.88572 1.00953 1.60529 1.07332 1.14533 1.50863 1.20830 0.87864 0.91212 1.02319 1.19712 0.98427 0.96382 0.92209 1.21234 1.00910 0.94381 0.98375 1.21190 0.98584 0.95106 0.97405 1.21210 1.02708 1.00335 0.92482 1.17726 0.99215 0.92516 0.84818 1.42465 1.69340 1.06939 1.13659 1.16114 0.78918 0.81843 0.83317 1.90888 1.50885 1.68391 1.39630 1.45236 1.66325 1.10421 1.16053 1.21139 0.99167 0.77432 0.98693 1.19132 0.96013 0.95438 0.90805 1.21428 1.41742 0.94743 1.00634 0.92238 1.25877 0.94606 1.03488 0.95266 1.70050 1.43133 1.38164 1.05185 0.85493 0.78949 0.79157 0.77420 1.19372 1.20600 1.19349 1.20847 1.01463 0.92906 0.99701 0.92705 0.90976 0.92979 0.94349 0.90919 0.83798 0.92682 0.89623 0.83692 0.84339 0.87473 0.73999 0.75488 0.93498 0.93614 0.97200 0.97168 0.92540 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 10.17 71.98 0.73 -0.84 16 2 C 0.05 0.59 6.40 86.30 0.55 1.14 16 3 N -0.70 -9.91 6.49 -517.92 -3.36 -13.28 16 4 C 0.11 1.38 5.81 85.56 0.50 1.88 16 5 C -0.07 -1.18 5.39 -19.89 -0.11 -1.29 16 6 C -0.13 -2.29 9.70 22.29 0.22 -2.07 16 7 C -0.10 -2.32 10.04 22.25 0.22 -2.09 16 8 C -0.15 -4.24 8.66 22.39 0.19 -4.04 16 9 C 0.15 4.08 6.28 38.15 0.24 4.32 16 10 N -0.68 -18.12 5.35 -317.18 -1.70 -19.82 16 11 C 0.70 24.85 8.30 179.06 1.49 26.34 16 12 O -0.62 -26.97 14.03 -4.01 -0.06 -27.03 16 13 N -0.73 -25.61 5.56 -478.53 -2.66 -28.27 16 14 C 0.16 6.95 5.61 86.38 0.48 7.43 16 15 C 0.02 1.19 5.09 29.85 0.15 1.34 16 16 C -0.55 -30.61 9.11 25.60 0.23 -30.38 16 17 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 18 C 0.01 0.36 5.46 84.65 0.46 0.83 16 19 N -0.93 -54.25 13.29 21.45 0.28 -53.96 16 20 Si 0.97 43.72 29.54 68.60 2.03 45.75 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 24 C -0.13 -2.70 9.62 22.39 0.22 -2.49 16 25 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 26 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.34 4.71 8.72 -89.69 -0.78 3.92 16 31 H 0.06 0.56 8.09 -2.39 -0.02 0.54 16 32 H 0.09 1.04 8.09 -2.38 -0.02 1.02 16 33 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 34 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.11 3.71 6.41 -2.91 -0.02 3.69 16 36 H 0.42 8.15 8.83 -92.71 -0.82 7.33 16 37 H 0.41 12.04 8.49 -92.70 -0.79 11.26 16 38 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 41 H 0.01 0.52 8.14 -2.38 -0.02 0.51 16 42 H 0.27 14.67 8.31 -92.72 -0.77 13.90 16 43 H 0.14 2.45 8.06 -2.91 -0.02 2.43 16 Total: -1.00 -69.62 363.34 -1.25 -70.86 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: -1.36 Total: 25.66 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 5.58 Total: 0.08 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -7.43 Total: -115.33 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.06 Total: -27.03 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -69.62 -1.25 -70.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415912434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.328 kcal (2) G-P(sol) polarization free energy of solvation -69.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds