Wall clock time and date at job start Tue Mar 31 2020 06:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47561 * 2 1 4 4 C 1.46896 * 111.00106 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.46982 * 179.97438 * 4 3 2 6 6 C 1.38303 * 119.96613 * 270.02456 * 5 4 3 7 7 C 1.38255 * 120.14168 * 180.02562 * 6 5 4 8 8 C 1.38139 * 120.07068 * 359.97438 * 7 6 5 9 9 C 1.38847 * 119.92684 * 359.97438 * 8 7 6 10 10 N 1.39941 * 120.06827 * 180.30284 * 9 8 7 11 11 C 1.34779 * 119.99919 * 324.64153 * 10 9 8 12 12 O 1.21582 * 119.99725 * 4.63724 * 11 10 9 13 13 N 1.34773 * 120.00122 * 184.63553 * 11 10 9 14 14 C 1.46500 * 119.99924 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47255 * 324.99643 * 14 13 11 16 16 C 1.53008 * 109.47148 * 85.00129 * 14 13 11 17 17 C 1.50699 * 109.47330 * 204.99542 * 14 13 11 18 18 H 1.08006 * 119.99746 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00348 * 179.97438 * 17 14 13 20 20 N 1.31520 * 119.99960 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00283 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.46996 * 60.00391 * 21 19 17 23 23 H 1.48498 * 109.47503 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47079 * 300.00442 * 21 19 17 25 25 C 1.38090 * 119.96308 * 89.99699 * 5 4 3 26 26 H 1.09005 * 109.46871 * 60.00620 * 1 2 3 27 27 H 1.08997 * 109.47623 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47408 * 300.00879 * 1 2 3 29 29 H 1.09001 * 109.47408 * 239.99121 * 2 1 3 30 30 H 1.09005 * 109.46871 * 119.99379 * 2 1 3 31 31 H 1.00899 * 110.99290 * 303.94923 * 3 2 1 32 32 H 1.09005 * 109.47236 * 59.99890 * 4 3 2 33 33 H 1.08999 * 109.47167 * 299.99794 * 4 3 2 34 34 H 1.08005 * 119.92613 * 359.97092 * 6 5 4 35 35 H 1.08004 * 119.96818 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.03519 * 180.02562 * 8 7 6 37 37 H 0.97005 * 120.00474 * 144.65387 * 10 9 8 38 38 H 0.96996 * 119.99983 * 0.02562 * 13 11 10 39 39 H 1.08994 * 109.47027 * 180.02562 * 16 14 13 40 40 H 1.08998 * 109.46511 * 299.99986 * 16 14 13 41 41 H 1.08997 * 109.47439 * 59.99627 * 16 14 13 42 42 H 0.96998 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.03953 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9525 2.8578 0.0000 6 6 4.1654 3.5144 -1.1985 7 6 4.5918 4.8296 -1.2033 8 6 4.8062 5.4921 -0.0103 9 6 4.5924 4.8360 1.1946 10 7 4.8025 5.5063 2.4049 11 6 5.7992 6.4072 2.5121 12 8 6.4618 6.6997 1.5355 13 7 6.0614 6.9837 3.7017 14 6 7.1445 7.9634 3.8180 15 1 7.9619 7.6818 3.1543 16 6 6.6238 9.3481 3.4272 17 6 7.6411 7.9966 5.2404 18 1 7.1949 7.3521 5.9834 19 6 8.6658 8.8490 5.5931 20 7 9.2095 9.6335 4.6883 21 14 9.2819 8.8897 7.3561 22 1 9.7869 7.5456 7.7351 23 1 10.3797 9.8828 7.4741 24 1 8.1686 9.2734 8.2608 25 6 4.1644 3.5146 1.1960 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6443 1.9011 -0.7814 32 1 3.8655 0.9199 -0.8892 33 1 3.8647 0.9203 0.8908 34 1 3.9989 2.9984 -2.1326 35 1 4.7576 5.3395 -2.1408 36 1 5.1389 6.5196 -0.0147 37 1 4.2309 5.3225 3.1668 38 1 5.5330 6.7501 4.4808 39 1 7.4298 10.0768 3.5133 40 1 6.2646 9.3240 2.3984 41 1 5.8064 9.6296 4.0910 42 1 9.9301 10.2334 4.9365 43 1 3.9980 3.0014 2.1316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415926120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:49 Heat of formation + Delta-G solvation = -9.295593 kcal Electronic energy + Delta-G solvation = -22335.613791 eV Core-core repulsion = 18994.347494 eV Total energy + Delta-G solvation = -3341.266297 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.19604 -38.67414 -36.68562 -35.08209 -34.14724 -32.51541 -32.09029 -29.99262 -29.35139 -28.08871 -25.25337 -25.10734 -22.71399 -22.34381 -22.03372 -20.54297 -19.72366 -18.16029 -17.18938 -16.37678 -15.97925 -15.81159 -15.35605 -15.08022 -14.96223 -14.51045 -14.34047 -13.98148 -13.53356 -13.38546 -13.06848 -12.81666 -12.42243 -12.33793 -12.14735 -11.89534 -11.73958 -11.55470 -11.41585 -11.10582 -10.99814 -10.94153 -10.76843 -10.33033 -10.23407 -9.99432 -9.35670 -9.06026 -8.78696 -8.60448 -8.55718 -8.09766 -7.68847 -6.12652 -4.21872 1.48877 1.51875 3.21059 3.25705 3.31084 3.33923 3.63774 3.94813 4.20794 4.32413 4.65248 4.82347 4.85291 4.93778 4.97584 5.14974 5.19022 5.20484 5.29185 5.39589 5.50278 5.55350 5.64648 5.72879 5.83273 5.89810 6.09588 6.50716 6.56288 6.66275 6.69755 6.79784 6.82949 6.97677 7.08371 7.12667 7.24641 7.31780 7.46608 7.61977 7.83866 8.00253 8.15188 8.72900 8.85326 9.24727 9.46587 10.93400 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.002672 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.000032 B =10478.066633 C =11095.645413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.052 3.948 3 N -0.686 5.686 4 C 0.102 3.898 5 C -0.072 4.072 6 C -0.141 4.141 7 C -0.102 4.102 8 C -0.119 4.119 9 C 0.180 3.820 10 N -0.697 5.697 11 C 0.693 3.307 12 O -0.582 6.582 13 N -0.719 5.719 14 C 0.280 3.720 15 H 0.049 0.951 16 C -0.148 4.148 17 C -0.534 4.534 18 H 0.060 0.940 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.903 3.097 22 H -0.276 1.276 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.132 4.132 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.064 0.936 29 H 0.027 0.973 30 H 0.072 0.928 31 H 0.342 0.658 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.143 0.857 37 H 0.402 0.598 38 H 0.386 0.614 39 H 0.091 0.909 40 H 0.015 0.985 41 H 0.026 0.974 42 H 0.265 0.735 43 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.985 -15.677 -8.900 23.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 N -0.317 5.317 4 C -0.026 4.026 5 C -0.073 4.073 6 C -0.160 4.160 7 C -0.121 4.121 8 C -0.139 4.139 9 C 0.083 3.917 10 N -0.345 5.345 11 C 0.393 3.607 12 O -0.460 6.460 13 N -0.370 5.370 14 C 0.179 3.821 15 H 0.067 0.933 16 C -0.207 4.207 17 C -0.573 4.573 18 H 0.079 0.921 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.731 3.269 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.202 1.202 25 C -0.154 4.154 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.160 0.840 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.160 0.840 37 H 0.237 0.763 38 H 0.218 0.782 39 H 0.109 0.891 40 H 0.034 0.966 41 H 0.045 0.955 42 H 0.075 0.925 43 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.181 -15.114 -9.029 22.606 hybrid contribution 0.076 -0.384 0.828 0.915 sum -14.105 -15.498 -8.201 22.503 Atomic orbital electron populations 1.21768 0.94898 1.01660 1.02528 1.21941 0.95765 0.89504 1.00473 1.60532 1.07417 1.13376 1.50406 1.20829 0.87623 0.92991 1.01169 1.19353 1.00059 0.95152 0.92746 1.20875 1.02968 0.95283 0.96924 1.20990 0.98854 0.94493 0.97782 1.21448 1.00020 1.01739 0.90730 1.17548 0.97944 0.90566 0.85596 1.42846 1.34702 1.43890 1.13062 1.16164 0.80224 0.79116 0.85175 1.90865 1.52304 1.66018 1.36822 1.45867 1.38247 1.45287 1.07614 1.18681 0.83335 0.83144 0.96989 0.93277 1.22105 1.00983 1.01218 0.96363 1.21165 1.19006 1.23110 0.93981 0.92134 1.24884 0.96007 0.95019 0.97824 1.69897 1.25030 1.23792 1.33316 0.86483 0.78426 0.77890 0.84126 1.20193 1.21120 1.20169 1.20679 1.04254 0.92263 0.98182 0.92843 0.92239 0.91711 0.95454 0.90989 0.83973 0.94412 0.90244 0.86828 0.86045 0.83966 0.76297 0.78164 0.89091 0.96589 0.95502 0.92486 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.17 37.16 0.38 -0.55 16 2 C 0.05 0.37 6.40 -3.83 -0.02 0.34 16 3 N -0.69 -5.93 6.49 -115.06 -0.75 -6.67 16 4 C 0.10 0.95 5.81 -4.98 -0.03 0.92 16 5 C -0.07 -0.84 5.39 -104.65 -0.56 -1.40 16 6 C -0.14 -1.62 9.70 -39.55 -0.38 -2.01 16 7 C -0.10 -1.35 10.04 -39.61 -0.40 -1.75 16 8 C -0.12 -1.92 8.70 -39.39 -0.34 -2.26 16 9 C 0.18 2.79 6.29 -83.69 -0.53 2.26 16 10 N -0.70 -11.05 5.34 -14.23 -0.08 -11.12 16 11 C 0.69 14.23 8.37 -86.92 -0.73 13.50 16 12 O -0.58 -14.14 13.45 5.29 0.07 -14.07 16 13 N -0.72 -15.04 5.07 -59.81 -0.30 -15.35 16 14 C 0.28 7.16 2.56 -69.08 -0.18 6.98 16 15 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 16 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 17 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 18 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 19 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 20 N -0.88 -24.87 11.32 55.43 0.63 -24.24 16 21 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.13 -1.72 9.62 -39.39 -0.38 -2.10 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.34 2.79 8.72 -39.29 -0.34 2.44 16 32 H 0.04 0.32 8.08 -51.93 -0.42 -0.10 16 33 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.11 1.04 8.06 -52.48 -0.42 0.61 16 35 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 36 H 0.14 2.65 6.23 -52.49 -0.33 2.32 16 37 H 0.40 4.98 8.84 -40.82 -0.36 4.62 16 38 H 0.39 6.88 8.56 -40.82 -0.35 6.53 16 39 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 LS Contribution 358.27 15.07 5.40 5.40 Total: -1.00 -30.87 358.27 -9.97 -40.84 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: -6.70 Total: 11.77 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: -3.22 Total: -2.16 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.50 Total: -57.38 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: 0.07 Total: -14.07 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.87 -9.97 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415926120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.546 kcal (2) G-P(sol) polarization free energy of solvation -30.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds