Wall clock time and date at job start Tue Mar 31 2020 06:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47561 * 2 1 4 4 C 1.46896 * 111.00106 * 179.97438 * 3 2 1 5 5 C 1.50704 * 109.46982 * 179.97438 * 4 3 2 6 6 C 1.38303 * 119.96613 * 270.02456 * 5 4 3 7 7 C 1.38255 * 120.14168 * 180.02562 * 6 5 4 8 8 C 1.38139 * 120.07068 * 359.97438 * 7 6 5 9 9 C 1.38847 * 119.92684 * 359.97438 * 8 7 6 10 10 N 1.39941 * 120.06827 * 180.30284 * 9 8 7 11 11 C 1.34779 * 119.99919 * 324.64153 * 10 9 8 12 12 O 1.21582 * 119.99725 * 4.63724 * 11 10 9 13 13 N 1.34773 * 120.00122 * 184.63553 * 11 10 9 14 14 C 1.46500 * 119.99924 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47255 * 324.99643 * 14 13 11 16 16 C 1.53008 * 109.47148 * 85.00129 * 14 13 11 17 17 C 1.50699 * 109.47330 * 204.99542 * 14 13 11 18 18 H 1.08006 * 119.99746 * 0.02562 * 17 14 13 19 19 C 1.37872 * 120.00348 * 179.97438 * 17 14 13 20 20 N 1.31520 * 119.99960 * 0.02562 * 19 17 14 21 21 Si 1.86799 * 120.00283 * 180.02562 * 19 17 14 22 22 H 1.48501 * 109.46996 * 60.00391 * 21 19 17 23 23 H 1.48498 * 109.47503 * 180.02562 * 21 19 17 24 24 H 1.48505 * 109.47079 * 300.00442 * 21 19 17 25 25 C 1.38090 * 119.96308 * 89.99699 * 5 4 3 26 26 H 1.09005 * 109.46871 * 60.00620 * 1 2 3 27 27 H 1.08997 * 109.47623 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47408 * 300.00879 * 1 2 3 29 29 H 1.09001 * 109.47408 * 239.99121 * 2 1 3 30 30 H 1.09005 * 109.46871 * 119.99379 * 2 1 3 31 31 H 1.00899 * 110.99290 * 303.94923 * 3 2 1 32 32 H 1.09005 * 109.47236 * 59.99890 * 4 3 2 33 33 H 1.08999 * 109.47167 * 299.99794 * 4 3 2 34 34 H 1.08005 * 119.92613 * 359.97092 * 6 5 4 35 35 H 1.08004 * 119.96818 * 179.97438 * 7 6 5 36 36 H 1.08001 * 120.03519 * 180.02562 * 8 7 6 37 37 H 0.97005 * 120.00474 * 144.65387 * 10 9 8 38 38 H 0.96996 * 119.99983 * 0.02562 * 13 11 10 39 39 H 1.08994 * 109.47027 * 180.02562 * 16 14 13 40 40 H 1.08998 * 109.46511 * 299.99986 * 16 14 13 41 41 H 1.08997 * 109.47439 * 59.99627 * 16 14 13 42 42 H 0.96998 * 119.99646 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.03953 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4241 0.0006 5 6 3.9525 2.8578 0.0000 6 6 4.1654 3.5144 -1.1985 7 6 4.5918 4.8296 -1.2033 8 6 4.8062 5.4921 -0.0103 9 6 4.5924 4.8360 1.1946 10 7 4.8025 5.5063 2.4049 11 6 5.7992 6.4072 2.5121 12 8 6.4618 6.6997 1.5355 13 7 6.0614 6.9837 3.7017 14 6 7.1445 7.9634 3.8180 15 1 7.9619 7.6818 3.1543 16 6 6.6238 9.3481 3.4272 17 6 7.6411 7.9966 5.2404 18 1 7.1949 7.3521 5.9834 19 6 8.6658 8.8490 5.5931 20 7 9.2095 9.6335 4.6883 21 14 9.2819 8.8897 7.3561 22 1 9.7869 7.5456 7.7351 23 1 10.3797 9.8828 7.4741 24 1 8.1686 9.2734 8.2608 25 6 4.1644 3.5146 1.1960 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 1.8934 -0.5140 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6443 1.9011 -0.7814 32 1 3.8655 0.9199 -0.8892 33 1 3.8647 0.9203 0.8908 34 1 3.9989 2.9984 -2.1326 35 1 4.7576 5.3395 -2.1408 36 1 5.1389 6.5196 -0.0147 37 1 4.2309 5.3225 3.1668 38 1 5.5330 6.7501 4.4808 39 1 7.4298 10.0768 3.5133 40 1 6.2646 9.3240 2.3984 41 1 5.8064 9.6296 4.0910 42 1 9.9301 10.2334 4.9365 43 1 3.9980 3.0014 2.1316 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415926120.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:48 Heat of formation + Delta-G solvation = -30.558611 kcal Electronic energy + Delta-G solvation = -22336.535825 eV Core-core repulsion = 18994.347494 eV Total energy + Delta-G solvation = -3342.188330 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.59041 -39.92424 -37.54406 -36.75798 -35.61895 -34.34418 -33.02715 -31.40370 -30.37442 -29.51737 -27.33648 -25.92693 -24.14778 -23.17434 -22.90004 -22.13060 -21.29736 -19.76836 -18.53705 -17.78586 -17.24018 -16.94335 -16.73327 -16.32732 -16.02266 -15.94227 -15.39178 -15.20517 -15.04499 -14.53630 -14.40159 -13.92517 -13.82397 -13.63217 -13.28149 -13.01415 -12.89177 -12.87454 -12.72880 -12.55596 -12.37128 -12.27079 -12.14828 -12.00384 -11.89061 -11.35315 -11.11804 -10.97241 -10.59341 -9.85973 -9.73322 -9.33116 -8.96402 -8.17408 -6.34869 0.40489 0.46722 1.45460 1.48026 1.55580 1.78352 2.17849 2.42469 2.85384 3.12980 3.43521 3.44912 3.86270 4.01812 4.22552 4.27990 4.36057 4.46909 4.48868 4.58425 4.66512 4.73384 4.74316 4.85563 4.92918 5.01854 5.07735 5.09645 5.16284 5.34563 5.36875 5.45484 5.46876 5.57637 5.65180 5.67786 5.69310 5.85283 6.06680 6.09011 6.17624 6.27246 6.47969 6.72429 7.22852 7.33840 7.67376 8.88994 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.028682 B = 0.002672 C = 0.002523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.000032 B =10478.066633 C =11095.645413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 N -0.695 5.695 4 C 0.107 3.893 5 C -0.067 4.067 6 C -0.129 4.129 7 C -0.106 4.106 8 C -0.148 4.148 9 C 0.152 3.848 10 N -0.678 5.678 11 C 0.692 3.308 12 O -0.625 6.625 13 N -0.714 5.714 14 C 0.289 3.711 15 H -0.002 1.002 16 C -0.134 4.134 17 C -0.547 4.547 18 H 0.074 0.926 19 C 0.013 3.987 20 N -0.917 5.917 21 Si 0.975 3.025 22 H -0.271 1.271 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.128 4.128 26 H 0.055 0.945 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.036 0.964 30 H 0.071 0.929 31 H 0.345 0.655 32 H 0.053 0.947 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.107 0.893 37 H 0.420 0.580 38 H 0.404 0.596 39 H 0.068 0.932 40 H 0.011 0.989 41 H 0.040 0.960 42 H 0.266 0.734 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.528 -18.102 -8.352 25.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.076 4.076 3 N -0.327 5.327 4 C -0.021 4.021 5 C -0.068 4.068 6 C -0.149 4.149 7 C -0.125 4.125 8 C -0.169 4.169 9 C 0.057 3.943 10 N -0.327 5.327 11 C 0.393 3.607 12 O -0.506 6.506 13 N -0.367 5.367 14 C 0.185 3.815 15 H 0.016 0.984 16 C -0.193 4.193 17 C -0.585 4.585 18 H 0.092 0.908 19 C -0.187 4.187 20 N -0.555 5.555 21 Si 0.799 3.201 22 H -0.196 1.196 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.150 4.150 26 H 0.074 0.926 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.054 0.946 30 H 0.089 0.911 31 H 0.164 0.836 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.155 0.845 36 H 0.125 0.875 37 H 0.258 0.742 38 H 0.239 0.761 39 H 0.087 0.913 40 H 0.030 0.970 41 H 0.059 0.941 42 H 0.075 0.925 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -15.797 -17.590 -8.468 25.114 hybrid contribution 0.490 0.274 0.521 0.766 sum -15.308 -17.317 -7.947 24.441 Atomic orbital electron populations 1.21746 0.94341 1.02329 1.02158 1.21975 0.96196 0.88626 1.00832 1.60513 1.06927 1.14480 1.50802 1.20796 0.88145 0.91100 1.02090 1.19708 0.98619 0.96325 0.92169 1.21224 1.00908 0.94346 0.98383 1.21202 0.98524 0.95427 0.97323 1.21341 1.02158 1.00778 0.92597 1.17770 0.99897 0.91749 0.84905 1.42485 1.33496 1.42563 1.14153 1.16264 0.80703 0.79510 0.84264 1.90843 1.54106 1.67460 1.38145 1.45457 1.37671 1.44927 1.08647 1.18257 0.83299 0.84092 0.95849 0.98367 1.21922 1.00441 1.00541 0.96387 1.21489 1.19345 1.23340 0.94344 0.90776 1.25818 0.96142 0.94549 1.02163 1.70053 1.25486 1.24465 1.35509 0.85354 0.77967 0.77884 0.78848 1.19627 1.21190 1.18799 1.20868 1.03332 0.91052 0.99704 0.92566 0.91091 0.92702 0.94575 0.91084 0.83636 0.92913 0.89967 0.83584 0.84454 0.87475 0.74220 0.76143 0.91331 0.97020 0.94061 0.92497 0.84319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 10.17 71.98 0.73 -0.74 16 2 C 0.05 0.59 6.40 86.30 0.55 1.15 16 3 N -0.69 -9.98 6.49 -517.93 -3.36 -13.34 16 4 C 0.11 1.63 5.81 85.56 0.50 2.13 16 5 C -0.07 -1.38 5.39 -19.88 -0.11 -1.49 16 6 C -0.13 -2.65 9.70 22.29 0.22 -2.43 16 7 C -0.11 -2.74 10.04 22.25 0.22 -2.51 16 8 C -0.15 -4.94 8.70 22.39 0.19 -4.75 16 9 C 0.15 4.72 6.29 38.15 0.24 4.96 16 10 N -0.68 -21.57 5.34 -317.18 -1.69 -23.27 16 11 C 0.69 29.31 8.37 179.05 1.50 30.81 16 12 O -0.62 -32.07 13.45 -3.97 -0.05 -32.12 16 13 N -0.71 -30.39 5.07 -461.41 -2.34 -32.73 16 14 C 0.29 15.23 2.56 44.25 0.11 15.34 16 15 H 0.00 -0.10 7.58 -2.39 -0.02 -0.12 16 16 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 17 C -0.55 -29.07 8.73 25.60 0.22 -28.84 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C 0.01 0.72 5.30 84.65 0.45 1.17 16 20 N -0.92 -52.87 11.32 21.45 0.24 -52.62 16 21 Si 0.98 42.02 29.54 68.60 2.03 44.05 16 22 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 23 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 24 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 25 C -0.13 -3.13 9.62 22.39 0.22 -2.92 16 26 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 27 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.04 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.35 4.59 8.72 -89.69 -0.78 3.81 16 32 H 0.05 0.67 8.08 -2.38 -0.02 0.65 16 33 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 34 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 35 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.11 4.32 6.23 -2.91 -0.02 4.30 16 37 H 0.42 10.03 8.84 -92.70 -0.82 9.21 16 38 H 0.40 14.16 8.56 -92.71 -0.79 13.36 16 39 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 40 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 43 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 Total: -1.00 -69.12 358.27 -0.83 -69.95 By element: Atomic # 1 Polarization: 35.82 SS G_CDS: -1.36 Total: 34.46 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 5.72 Total: 5.63 kcal Atomic # 7 Polarization: -114.81 SS G_CDS: -7.15 Total: -121.96 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -0.05 Total: -32.12 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -69.12 -0.83 -69.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415926120.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.391 kcal (2) G-P(sol) polarization free energy of solvation -69.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds