Wall clock time and date at job start Tue Mar 31 2020 07:23:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 120.00126 * 2 1 4 4 C 1.53003 * 109.46880 * 270.00207 * 3 2 1 5 5 N 1.46901 * 109.46868 * 180.02562 * 4 3 2 6 6 C 1.34775 * 120.00149 * 179.97438 * 2 1 3 7 7 O 1.21596 * 120.00015 * 179.97438 * 6 2 1 8 8 N 1.34771 * 120.00181 * 0.02562 * 6 2 1 9 9 C 1.46500 * 120.00556 * 179.97438 * 8 6 2 10 10 H 1.09009 * 109.46624 * 324.99750 * 9 8 6 11 11 C 1.52996 * 109.47466 * 205.00158 * 9 8 6 12 12 C 1.50702 * 109.47159 * 64.99479 * 11 9 8 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 9 14 14 C 1.37884 * 119.99942 * 179.72211 * 12 11 9 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48496 * 109.47341 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46983 * 120.00379 * 16 14 12 19 19 H 1.48503 * 109.47491 * 240.00192 * 16 14 12 20 20 C 1.50700 * 109.47471 * 84.99708 * 9 8 6 21 21 C 1.38233 * 119.99377 * 39.72808 * 20 9 8 22 22 C 1.38237 * 119.99600 * 179.78842 * 21 20 9 23 23 C 1.38241 * 119.99990 * 0.44354 * 22 21 20 24 24 C 1.38237 * 119.99716 * 359.81238 * 23 22 21 25 25 C 1.38228 * 120.00326 * 220.00479 * 20 9 8 26 26 H 1.09000 * 109.46930 * 269.99920 * 1 2 3 27 27 H 1.09004 * 109.47278 * 30.00401 * 1 2 3 28 28 H 1.09000 * 109.46593 * 150.00226 * 1 2 3 29 29 H 1.08997 * 109.46532 * 29.99891 * 3 2 1 30 30 H 1.08992 * 109.46992 * 149.99646 * 3 2 1 31 31 H 1.09008 * 109.46827 * 299.99345 * 4 3 2 32 32 H 1.08992 * 109.47377 * 59.99539 * 4 3 2 33 33 H 1.00900 * 110.99961 * 56.03815 * 5 4 3 34 34 H 1.00901 * 110.99642 * 179.97438 * 5 4 3 35 35 H 0.97002 * 120.00072 * 359.97438 * 8 6 2 36 36 H 1.09004 * 109.47066 * 304.99682 * 11 9 8 37 37 H 1.08994 * 109.47405 * 184.99512 * 11 9 8 38 38 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 39 39 H 1.07995 * 120.00514 * 359.97438 * 21 20 9 40 40 H 1.08001 * 120.00058 * 180.28006 * 22 21 20 41 41 H 1.07995 * 120.00194 * 179.83256 * 23 22 21 42 42 H 1.08001 * 119.99824 * 180.02562 * 24 23 22 43 43 H 1.08005 * 119.99906 * 359.97438 * 25 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1875 2.9823 -1.4425 6 6 2.1389 -1.1672 0.0005 7 8 3.3548 -1.1671 0.0001 8 7 1.4651 -2.3344 0.0005 9 6 2.1975 -3.6031 0.0005 10 1 3.1083 -3.4968 -0.5890 11 6 1.3204 -4.6985 -0.6091 12 6 1.0635 -4.3864 -2.0609 13 1 1.4841 -3.4960 -2.5045 14 6 0.2965 -5.2407 -2.8245 15 7 -0.2153 -6.3251 -2.2843 16 14 -0.0155 -4.8578 -4.6259 17 1 0.6664 -3.5893 -4.9877 18 1 0.5152 -5.9617 -5.4658 19 1 -1.4759 -4.7185 -4.8567 20 6 2.5560 -3.9763 1.4159 21 6 1.6494 -3.7633 2.4374 22 6 1.9766 -4.1097 3.7351 23 6 3.2138 -4.6605 4.0126 24 6 4.1223 -4.8685 2.9917 25 6 3.7935 -4.5262 1.6934 26 1 -0.3633 0.0000 1.0277 27 1 -0.3634 0.8900 -0.5139 28 1 -0.3632 -0.8900 -0.5138 29 1 1.6084 2.0283 0.5138 30 1 3.1498 1.1384 0.5139 31 1 3.0417 0.9507 -1.9564 32 1 1.5001 1.8407 -1.9564 33 1 4.0450 2.9044 -0.9165 34 1 3.3687 3.2952 -2.3846 35 1 0.4951 -2.3344 0.0005 36 1 0.3719 -4.7443 -0.0740 37 1 1.8297 -5.6587 -0.5286 38 1 -0.7552 -6.9260 -2.8215 39 1 0.6845 -3.3292 2.2214 40 1 1.2666 -3.9475 4.5326 41 1 3.4704 -4.9285 5.0268 42 1 5.0888 -5.2992 3.2083 43 1 4.5033 -4.6888 0.8958 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000417923048.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:23:04 Heat of formation + Delta-G solvation = -5.449831 kcal Electronic energy + Delta-G solvation = -23634.600315 eV Core-core repulsion = 20293.500783 eV Total energy + Delta-G solvation = -3341.099532 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 291.169 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.97967 -38.69220 -36.22685 -34.99499 -34.10253 -32.68364 -30.97227 -30.41574 -28.86885 -28.02002 -26.10826 -24.73802 -22.41308 -22.22228 -21.89263 -20.12451 -19.37268 -17.81436 -16.79372 -16.33947 -16.12226 -15.68870 -15.35724 -14.83743 -14.68847 -14.53920 -14.27229 -13.67105 -13.31727 -13.23718 -13.11877 -12.94521 -12.63300 -12.49649 -12.27529 -12.10234 -11.89024 -11.52744 -11.16295 -11.10478 -10.90583 -10.72772 -10.58764 -10.42747 -9.76915 -9.64026 -9.28011 -8.87820 -8.60743 -8.50449 -8.45890 -8.22283 -8.12843 -6.10011 -4.13018 1.81649 1.84042 2.99651 3.24335 3.33176 3.37392 3.67533 4.19953 4.37992 4.44176 4.67133 5.04053 5.17185 5.22085 5.26734 5.29404 5.30621 5.40357 5.52853 5.55951 5.59425 5.75711 5.83995 5.94542 5.97733 6.04231 6.18467 6.38915 6.44835 6.60091 6.66227 6.87936 6.88770 6.97465 6.99229 7.13931 7.27052 7.28330 7.44312 7.51544 7.67907 7.87376 8.25791 8.46556 8.93239 9.09639 9.51835 11.00560 Molecular weight = 291.17amu Principal moments of inertia in cm(-1) A = 0.008211 B = 0.007121 C = 0.004259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3409.309995 B = 3931.175275 C = 6573.151006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.637 5.637 3 C 0.140 3.860 4 C 0.043 3.957 5 N -0.850 5.850 6 C 0.705 3.295 7 O -0.597 6.597 8 N -0.715 5.715 9 C 0.200 3.800 10 H 0.085 0.915 11 C 0.023 3.977 12 C -0.518 4.518 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.274 1.274 18 H -0.284 1.284 19 H -0.284 1.284 20 C -0.070 4.070 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.108 4.108 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.035 0.965 32 H 0.070 0.930 33 H 0.341 0.659 34 H 0.342 0.658 35 H 0.397 0.603 36 H 0.024 0.976 37 H 0.035 0.965 38 H 0.261 0.739 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.308 11.194 7.914 13.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.376 5.376 3 C 0.015 3.985 4 C -0.090 4.090 5 N -0.379 5.379 6 C 0.406 3.594 7 O -0.476 6.476 8 N -0.368 5.368 9 C 0.096 3.904 10 H 0.103 0.897 11 C -0.014 4.014 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.142 4.142 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 C -0.072 4.072 21 C -0.125 4.125 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.126 4.126 26 H 0.071 0.929 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.153 0.847 34 H 0.154 0.846 35 H 0.233 0.767 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.426 11.298 8.234 14.189 hybrid contribution -0.097 -0.487 -1.572 1.649 sum 2.329 10.811 6.661 12.910 Atomic orbital electron populations 1.21727 0.79968 1.03304 1.01477 1.46924 1.06228 1.04913 1.79531 1.21096 0.97817 0.83680 0.95875 1.22197 0.98686 0.90024 0.98054 1.58707 1.28177 1.30967 1.20062 1.15954 0.85357 0.80494 0.77607 1.90858 1.11689 1.86303 1.58731 1.45278 1.09790 1.04079 1.77667 1.20122 0.97007 0.83197 0.90117 0.89654 1.19400 0.94262 0.92229 0.95508 1.21172 1.31532 1.08129 0.94748 0.92400 1.24988 0.95817 0.94991 0.98373 1.69971 1.34357 1.12519 1.36208 0.86558 0.77845 0.78393 0.85344 1.19824 1.20973 1.21029 1.20598 0.93492 0.96326 0.96737 1.20879 0.99172 0.99998 0.92405 1.21033 0.96742 1.00091 0.96508 1.20983 0.94515 1.01252 0.98636 1.21032 0.99234 1.00761 0.93097 1.21010 0.96221 0.98893 0.96508 0.92919 0.91156 0.90775 0.90344 0.90211 0.94662 0.91154 0.84710 0.84601 0.76741 0.95785 0.94661 0.92939 0.86732 0.86820 0.86898 0.86658 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.89 10.20 59.85 0.61 1.50 16 2 N -0.64 -9.33 2.87 -187.35 -0.54 -9.87 16 3 C 0.14 1.81 5.67 -4.04 -0.02 1.79 16 4 C 0.04 0.53 7.11 -3.82 -0.03 0.50 16 5 N -0.85 -8.69 9.62 -10.37 -0.10 -8.79 16 6 C 0.70 13.19 8.24 -86.92 -0.72 12.47 16 7 O -0.60 -13.16 15.58 5.28 0.08 -13.08 16 8 N -0.71 -13.32 3.89 -59.81 -0.23 -13.55 16 9 C 0.20 4.17 2.12 -69.08 -0.15 4.03 16 10 H 0.09 1.96 7.44 -51.92 -0.39 1.57 16 11 C 0.02 0.56 4.50 -27.88 -0.13 0.44 16 12 C -0.52 -13.70 8.84 -34.44 -0.30 -14.00 16 13 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.47 13.29 55.43 0.74 -24.73 16 16 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 17 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.07 -1.33 4.91 -104.63 -0.51 -1.85 16 21 C -0.11 -1.83 9.33 -39.58 -0.37 -2.20 16 22 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 23 C -0.14 -1.98 10.05 -39.58 -0.40 -2.38 16 24 C -0.12 -1.90 10.05 -39.59 -0.40 -2.30 16 25 C -0.11 -1.92 9.67 -39.59 -0.38 -2.31 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.66 8.07 -51.93 -0.42 0.24 16 28 H 0.07 0.89 6.36 -51.93 -0.33 0.56 16 29 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.08 1.15 7.42 -51.93 -0.39 0.77 16 31 H 0.04 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.34 3.23 8.99 -39.29 -0.35 2.88 16 34 H 0.34 2.99 9.08 -39.29 -0.36 2.63 16 35 H 0.40 6.81 6.33 -40.82 -0.26 6.55 16 36 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 39 H 0.11 1.86 7.71 -52.49 -0.40 1.45 16 40 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 41 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 42 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.12 2.05 8.04 -52.48 -0.42 1.63 16 LS Contribution 360.74 15.07 5.44 5.44 Total: -1.00 -31.76 360.74 -9.58 -41.34 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -6.66 Total: 12.35 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -3.29 Total: -5.07 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.13 Total: -56.95 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: 0.08 Total: -13.08 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.76 -9.58 -41.34 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000417923048.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.892 kcal (2) G-P(sol) polarization free energy of solvation -31.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds